Targeting RNF8 Effectively Reverse Cisplatin and Doxorubicin Resistance in Endometrial Cancer
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The Functions of DNA Damage Factor RNF8 in the Pathogenesis And
Int. J. Biol. Sci. 2019, Vol. 15 909 Ivyspring International Publisher International Journal of Biological Sciences 2019; 15(5): 909-918. doi: 10.7150/ijbs.31972 Review The Functions of DNA Damage Factor RNF8 in the Pathogenesis and Progression of Cancer Tingting Zhou 1, Fei Yi 1, Zhuo Wang 1, Qiqiang Guo 1, Jingwei Liu 1, Ning Bai 1, Xiaoman Li 1, Xiang Dong 1, Ling Ren 2, Liu Cao 1, Xiaoyu Song 1 1. Institute of Translational Medicine, China Medical University; Key Laboratory of Medical Cell Biology, Ministry of Education; Liaoning Province Collaborative Innovation Center of Aging Related Disease Diagnosis and Treatment and Prevention, Shenyang, Liaoning Province, China 2. Department of Anus and Intestine Surgery, First Affiliated Hospital of China Medical University, Shenyang, Liaoning Province, China Corresponding authors: Xiaoyu Song, e-mail: [email protected] and Liu Cao, e-mail: [email protected]. Key Laboratory of Medical Cell Biology, Ministry of Education; Institute of Translational Medicine, China Medical University; Collaborative Innovation Center of Aging Related Disease Diagnosis and Treatment and Prevention, Shenyang, Liaoning Province, 110122, China. Tel: +86 24 31939636, Fax: +86 24 31939636. © Ivyspring International Publisher. This is an open access article distributed under the terms of the Creative Commons Attribution (CC BY-NC) license (https://creativecommons.org/licenses/by-nc/4.0/). See http://ivyspring.com/terms for full terms and conditions. Received: 2018.12.03; Accepted: 2019.02.08; Published: 2019.03.09 Abstract The really interesting new gene (RING) finger protein 8 (RNF8) is a central factor in DNA double strand break (DSB) signal transduction. -
Structure and Function of the Human Recq DNA Helicases
Zurich Open Repository and Archive University of Zurich Main Library Strickhofstrasse 39 CH-8057 Zurich www.zora.uzh.ch Year: 2005 Structure and function of the human RecQ DNA helicases Garcia, P L Posted at the Zurich Open Repository and Archive, University of Zurich ZORA URL: https://doi.org/10.5167/uzh-34420 Dissertation Published Version Originally published at: Garcia, P L. Structure and function of the human RecQ DNA helicases. 2005, University of Zurich, Faculty of Science. Structure and Function of the Human RecQ DNA Helicases Dissertation zur Erlangung der naturwissenschaftlichen Doktorw¨urde (Dr. sc. nat.) vorgelegt der Mathematisch-naturwissenschaftlichen Fakultat¨ der Universitat¨ Z ¨urich von Patrick L. Garcia aus Unterseen BE Promotionskomitee Prof. Dr. Josef Jiricny (Vorsitz) Prof. Dr. Ulrich H ¨ubscher Dr. Pavel Janscak (Leitung der Dissertation) Z ¨urich, 2005 For my parents ii Summary The RecQ DNA helicases are highly conserved from bacteria to man and are required for the maintenance of genomic stability. All unicellular organisms contain a single RecQ helicase, whereas the number of RecQ homologues in higher organisms can vary. Mu- tations in the genes encoding three of the five human members of the RecQ family give rise to autosomal recessive disorders called Bloom syndrome, Werner syndrome and Rothmund-Thomson syndrome. These diseases manifest commonly with genomic in- stability and a high predisposition to cancer. However, the genetic alterations vary as well as the types of tumours in these syndromes. Furthermore, distinct clinical features are observed, like short stature and immunodeficiency in Bloom syndrome patients or premature ageing in Werner Syndrome patients. Also, the biochemical features of the human RecQ-like DNA helicases are diverse, pointing to different roles in the mainte- nance of genomic stability. -
Plugged Into the Ku-DNA Hub: the NHEJ Network Philippe Frit, Virginie Ropars, Mauro Modesti, Jean-Baptiste Charbonnier, Patrick Calsou
Plugged into the Ku-DNA hub: The NHEJ network Philippe Frit, Virginie Ropars, Mauro Modesti, Jean-Baptiste Charbonnier, Patrick Calsou To cite this version: Philippe Frit, Virginie Ropars, Mauro Modesti, Jean-Baptiste Charbonnier, Patrick Calsou. Plugged into the Ku-DNA hub: The NHEJ network. Progress in Biophysics and Molecular Biology, Elsevier, 2019, 147, pp.62-76. 10.1016/j.pbiomolbio.2019.03.001. hal-02144114 HAL Id: hal-02144114 https://hal.archives-ouvertes.fr/hal-02144114 Submitted on 29 May 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Progress in Biophysics and Molecular Biology xxx (xxxx) xxx Contents lists available at ScienceDirect Progress in Biophysics and Molecular Biology journal homepage: www.elsevier.com/locate/pbiomolbio Plugged into the Ku-DNA hub: The NHEJ network * Philippe Frit a, b, Virginie Ropars c, Mauro Modesti d, e, Jean Baptiste Charbonnier c, , ** Patrick Calsou a, b, a Institut de Pharmacologie et Biologie Structurale, IPBS, Universite de Toulouse, CNRS, UPS, Toulouse, France b Equipe Labellisee Ligue Contre -
DNA Damage and Its Links to Neurodegeneration
Neuron Review DNA Damage and Its Links to Neurodegeneration Ram Madabhushi,1,2 Ling Pan,1,2 and Li-Huei Tsai1,2,* 1Picower Institute for Learning and Memory 2Department of Brain and Cognitive Sciences Massachusetts Institute of Technology, Cambridge, MA 02139, USA *Correspondence: [email protected] http://dx.doi.org/10.1016/j.neuron.2014.06.034 The integrity of our genetic material is under constant attack from numerous endogenous and exogenous agents. The consequences of a defective DNA damage response are well studied in proliferating cells, espe- cially with regards to the development of cancer, yet its precise roles in the nervous system are relatively poorly understood. Here we attempt to provide a comprehensive overview of the consequences of genomic instability in the nervous system. We highlight the neuropathology of congenital syndromes that result from mutations in DNA repair factors and underscore the importance of the DNA damage response in neural devel- opment. In addition, we describe the findings of recent studies, which reveal that a robust DNA damage response is also intimately connected to aging and the manifestation of age-related neurodegenerative dis- orders such as Alzheimer’s disease and amyotrophic lateral sclerosis. Introduction The Cellular DNA Damage Response Upon analyzing the data collected in the 2000 census, health On any given day, a listing of endogenous DNA damage experi- officials arrived at the remarkable prediction that by the year enced by a typical mammalian cell would read something as fol- 2050, approximately 800,000 Americans would live to see their lows: 200 cytosine deaminations, 3,000 guanine methylations, hundredth birthday (Park, 2010). -
Evolutionary History of Ku Proteins: Evidence of Horizontal Gene Transfer from Archaea to Eukarya
Evolutionary history of Ku proteins: evidence of horizontal gene transfer from archaea to eukarya Ashmita Mainali Kathmandu University Sadikshya Rijal Kathmandu University Hitesh Kumar Bhattarai ( [email protected] ) Kathmandu University https://orcid.org/0000-0002-7147-1411 Research article Keywords: Double Stranded Breaks, Non-homologous End Joining, Maximum Likelihood Phylogenetic tree, domains, Ku protein, origin, evolution Posted Date: October 29th, 2020 DOI: https://doi.org/10.21203/rs.3.rs-58075/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/24 Abstract Background The DNA end joining protein, Ku, is essential in Non-Homologous End Joining in prokaryotes and eukaryotes. It was rst discovered in eukaryotes and later by PSI blast, was discovered in prokaryotes. While Ku in eukaryotes is often a multi domain protein functioning in DNA repair of physiological and pathological DNA double stranded breaks, Ku in prokaryotes is a single domain protein functioning in pathological DNA repair in spores or late stationary phase. In this paper we have attempted to systematically search for Ku protein in different phyla of bacteria and archaea as well as in different kingdoms of eukarya. Result From our search of 116 sequenced bacterial genomes, only 25 genomes yielded at least one Ku sequence. From a comprehensive search of all NCBI archaeal genomes, we received a positive hit in 7 specic archaea that possessed Ku. In eukarya, we found Ku protein in 27 out of 59 species. Since the entire genome of all eukaryotic species is not fully sequenced this number could go up. -
Ku80 Antibody A
Revision 1 C 0 2 - t Ku80 Antibody a e r o t S Orders: 877-616-CELL (2355) [email protected] Support: 877-678-TECH (8324) 3 5 Web: [email protected] 7 www.cellsignal.com 2 # 3 Trask Lane Danvers Massachusetts 01923 USA For Research Use Only. Not For Use In Diagnostic Procedures. Applications: Reactivity: Sensitivity: MW (kDa): Source: UniProt ID: Entrez-Gene Id: WB, IP, IHC-P, IF-IC, F H Mk Endogenous 86 Rabbit P13010 7520 Product Usage Information cell cycle regulation, DNA replication and repair, telomere maintenance, recombination, and transcriptional activation. Application Dilution 1. Tuteja, R. and Tuteja, N. (2000) Crit. Rev. Biochem. Mol. Biol. 35, 1-33. 2. Blier, P.R. et al. (1993) J. Biol. Chem. 268, 7594-7601. Western Blotting 1:1000 3. Jin, S. and Weaver, D.T. (1997) EMBO J. 16, 6874-6885. Immunoprecipitation 1:25 4. Boulton, S.J. and Jackson, S.P. (1998) EMBO J. 17, 1819-1828. 5. Gravel, S. et al. (1998) Science 280, 741-744. Immunohistochemistry (Paraffin) 1:150 - 1:600 6. Cao, Q.P. et al. (1994) Biochemistry 33, 8548-8557. Immunofluorescence (Immunocytochemistry) 1:100 - 1:400 7. Lees-Miller, S.P. et al. (1990) Mol. Cell Biol. 10, 6472-6481. Flow Cytometry 1:50 - 1:100 8. Collis, S.J. et al. (2005) Oncogene 24, 949-961. Storage Supplied in 10 mM sodium HEPES (pH 7.5), 150 mM NaCl, 100 µg/ml BSA and 50% glycerol. Store at –20°C. Do not aliquot the antibody. Specificity / Sensitivity Ku80 antibody detects endogenous levels of total Ku80 protein. -
A Werner Syndrome Protein Homolog Affects C. Elegans Development
Research article 2565 A Werner syndrome protein homolog affects C. elegans development, growth rate, life span and sensitivity to DNA damage by acting at a DNA damage checkpoint Se-Jin Lee, Jong-Sung Yook, Sung Min Han and Hyeon-Sook Koo* Department of Biochemistry, College of Science, Yonsei University, Seoul 120-749, Korea *Author for correspondence (e-mail: [email protected]) Accepted 18 February 2004 Development 131, 2565-2575 Published by The Company of Biologists 2004 doi:10.1242/dev.01136 Summary A Werner syndrome protein homolog in C. elegans (WRN- irrespective of γ-irradiation, and pre-meiotic germ cells had 1) was immunolocalized to the nuclei of germ cells, an abnormal checkpoint response to DNA replication embryonic cells, and many other cells of larval and adult blockage. These observations suggest that WRN-1 acts as worms. When wrn-1 expression was inhibited by RNA a checkpoint protein for DNA damage and replication interference (RNAi), a slight reduction in C. elegans life blockage. This idea is also supported by an accelerated S span was observed, with accompanying signs of premature phase in wrn-1(RNAi) embryonic cells. wrn-1(RNAi) aging, such as earlier accumulation of lipofuscin and phenotypes similar to those of Werner syndrome, such as tissue deterioration in the head. In addition, various premature aging and short stature, suggest wrn-1-deficient developmental defects, including small, dumpy, ruptured, C. elegans as a useful model organism for Werner transparent body, growth arrest and bag of worms, were syndrome. induced by RNAi. The frequency of these defects was accentuated by γ-irradiation, implying that they were derived from spontaneous or induced DNA damage. -
DNA Repair with Its Consequences (E.G
Cell Science at a Glance 515 DNA repair with its consequences (e.g. tolerance and pathways each require a number of apoptosis) as well as direct correction of proteins. By contrast, O-alkylated bases, Oliver Fleck* and Olaf Nielsen* the damage by DNA repair mechanisms, such as O6-methylguanine can be Department of Genetics, Institute of Molecular which may require activation of repaired by the action of a single protein, Biology, University of Copenhagen, Øster checkpoint pathways. There are various O6-methylguanine-DNA Farimagsgade 2A, DK-1353 Copenhagen K, Denmark forms of DNA damage, such as base methyltransferase (MGMT). MGMT *Authors for correspondence (e-mail: modifications, strand breaks, crosslinks removes the alkyl group in a suicide fl[email protected]; [email protected]) and mismatches. There are also reaction by transfer to one of its cysteine numerous DNA repair pathways. Each residues. Photolyases are able to split Journal of Cell Science 117, 515-517 repair pathway is directed to specific Published by The Company of Biologists 2004 covalent bonds of pyrimidine dimers doi:10.1242/jcs.00952 types of damage, and a given type of produced by UV radiation. They bind to damage can be targeted by several a UV lesion in a light-independent Organisms are permanently exposed to pathways. Major DNA repair pathways process, but require light (350-450 nm) endogenous and exogenous agents that are mismatch repair (MMR), nucleotide as an energy source for repair. Another damage DNA. If not repaired, such excision repair (NER), base excision NER-independent pathway that can damage can result in mutations, diseases repair (BER), homologous recombi- remove UV-induced damage, UVER, is and cell death. -
RNF168 Ubiquitylates 53BP1 and Controls Its Response to DNA Double-Strand Breaks
RNF168 ubiquitylates 53BP1 and controls its response to DNA double-strand breaks Miyuki Bohgakia,b,1, Toshiyuki Bohgakia,b,1, Samah El Ghamrasnia,b, Tharan Srikumara,b, Georges Mairec, Stephanie Panierd, Amélie Fradet-Turcotted, Grant S. Stewarte, Brian Raughta,b, Anne Hakema,b, and Razqallah Hakema,b,2 aOntario Cancer Institute, University Health Network and bDepartment of Medical Biophysics, University of Toronto, Toronto, M5G 2M9 ON, Canada; cThe Hospital for Sick Children, Toronto, M5G 2L3 ON, Canada; dDepartment of Molecular Genetics, University of Toronto, Toronto, ON, Canada M5S 1A8; and eCancer Research UK, Institute for Cancer Studies, Birmingham University, Birmingham B15 2TT, United Kingdom Edited* by Stephen J. Elledge, Harvard Medical School, Boston, MA, and approved November 14, 2013 (received for review October 30, 2013) Defective signaling or repair of DNA double-strand breaks has X–MDC1–RNF8 axis, RNF168 also functions in DSB signaling been associated with developmental defects and human diseases. independently of this pathway. Therefore, we postulated that The E3 ligase RING finger 168 (RNF168), mutated in the human RNF168 also might regulate DSB signaling through direct radiosensitivity, immunodeficiency, dysmorphic features, and modulation of 53BP1 functions. learning difficulties syndrome, was shown to ubiquitylate H2A- In the present study, we demonstrate that RNF168 associates γ – – type histones, and this ubiquitylation was proposed to facilitate with 53BP1 independently of the -H2A.X MDC1 RNF8 sig- the recruitment of p53-binding protein 1 (53BP1) to the sites of naling axis. RNF168 ubiquitylates 53BP1 before its localization DNA double-strand breaks. In contrast to more upstream proteins to DSB sites, and this ubiquitylation is important for the initial signaling DNA double-strand breaks (e.g., RNF8), deficiency of recruitment of 53BP1 to DSB sites and its function in non- homologous end joining (NHEJ) and activation of checkpoints. -
Biochemical Characterization of the Werner – Like Exonuclease From
Biochemical characterization of the Werner – like exonuclease from Arabidopsis thaliana Zur Erlangung des akademischen Grades eines Doktors der Naturwissenschaften an der Fakultät für Chemie und Biowissenschaften der Universität Karlsruhe (TH) genehmigte DISSERTATION von Diplom-Biochemikerin Helena Plchova aus Prag, Tschechische Republik Dekan: Prof. Dr. Manfred Metzler 1. Gutachter: Prof. Dr. Holger Puchta 2. Gutachter: Prof. Dr. Andrea Hartwig Tag der mündlichen Prüfung: 04.12.03 Acknowledgements This work was carried out during the period from September 1999 to June 2003 at the Institut for Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany. I would like to express my sincere gratitude to my supervisor, Prof. Dr. H. Puchta, for giving me the opportunity to work in his research group “DNA-Recombination”, for his expertise, understanding, stimulating discussions and valuable suggestions during the practical work and writing of the manuscript. I appreciate his vast knowledge and skill in many areas and his assistance during the course of the work. I would like to thank also Dr. Manfred Focke for reading the manuscript and helpful discussions. My sincere gratitude is to all the collaborators of the Institute for Plant Genetics and Crop Plant Research (IPK) in Gatersleben, especially from the “DNA-Recombination” group for the stimulating environment and very friendly atmosphere during this work. Finally, I also thank all my friends that supported me in my Ph.D. study and were always around at any time. Table of contents Page 1. Introduction 1 1.1. Werner syndrome (WS) 1 1.2. Product of Werner syndrome gene 2 1.2.1. RecQ DNA helicases 3 1.2.2 Mutations in Werner syndrome gene 6 1.3. -
MDC1 and RNF8 Function in a Pathway That Directs BRCA1
Research Article 6049 MDC1 and RNF8 function in a pathway that directs BRCA1-dependent localization of PALB2 required for homologous recombination Fan Zhang1, Gregory Bick1, Jung-Young Park1 and Paul R. Andreassen1,2,* 1Division of Experimental Hematology and Cancer Biology, Cincinnati Children’s Research Foundation, Cincinnati, OH 45229, USA 2Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, OH 45229, USA *Author for correspondence ([email protected]) Accepted 6 September 2012 Journal of Cell Science 125, 6049–6057 ß 2012. Published by The Company of Biologists Ltd doi: 10.1242/jcs.111872 Summary The PALB2 protein is associated with breast cancer susceptibility and Fanconi anemia. Notably, PALB2 is also required for DNA repair by homologous recombination (HR). However, the mechanisms that regulate PALB2, and the functional significance of its interaction with the BRCA1 breast cancer susceptibility protein, are poorly understood. Here, to better understand these processes, we fused PALB2, or the PALB2(L21P) mutant which cannot bind to BRCA1, with the BRCT repeats that are present in, and which localize, BRCA1. Our results yield important insights into the regulation of PALB2 function. Both fusion proteins can bypass BRCA1 to localize to sites of DNA damage. Further, the localized fusion proteins are functional, as determined by their ability to support the assembly of RAD51 foci, even in the absence of the capacity of PALB2 to bind BRCA1. Strikingly, the localized fusion proteins mediate DNA double-strand break (DSB)-initiated HR and resistance to mitomycin C in PALB2-deficient cells. Additionally, we show that the BRCA1–PALB2 heterodimer, rather than the PALB2–PALB2 homodimer, mediates these responses. -
Epigenetic Regulation of DNA Repair Genes and Implications for Tumor Therapy ⁎ ⁎ Markus Christmann , Bernd Kaina
Mutation Research-Reviews in Mutation Research xxx (xxxx) xxx–xxx Contents lists available at ScienceDirect Mutation Research-Reviews in Mutation Research journal homepage: www.elsevier.com/locate/mutrev Review Epigenetic regulation of DNA repair genes and implications for tumor therapy ⁎ ⁎ Markus Christmann , Bernd Kaina Department of Toxicology, University of Mainz, Obere Zahlbacher Str. 67, D-55131 Mainz, Germany ARTICLE INFO ABSTRACT Keywords: DNA repair represents the first barrier against genotoxic stress causing metabolic changes, inflammation and DNA repair cancer. Besides its role in preventing cancer, DNA repair needs also to be considered during cancer treatment Genotoxic stress with radiation and DNA damaging drugs as it impacts therapy outcome. The DNA repair capacity is mainly Epigenetic silencing governed by the expression level of repair genes. Alterations in the expression of repair genes can occur due to tumor formation mutations in their coding or promoter region, changes in the expression of transcription factors activating or Cancer therapy repressing these genes, and/or epigenetic factors changing histone modifications and CpG promoter methylation MGMT Promoter methylation or demethylation levels. In this review we provide an overview on the epigenetic regulation of DNA repair genes. GADD45 We summarize the mechanisms underlying CpG methylation and demethylation, with de novo methyl- TET transferases and DNA repair involved in gain and loss of CpG methylation, respectively. We discuss the role of p53 components of the DNA damage response, p53, PARP-1 and GADD45a on the regulation of the DNA (cytosine-5)- methyltransferase DNMT1, the key enzyme responsible for gene silencing. We stress the relevance of epigenetic silencing of DNA repair genes for tumor formation and tumor therapy.