Spectroscopy
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Conformations of Cyclopentasilane Stereoisomers Control Molecular Junction Conductance
Electronic Supplementary Material (ESI) for Chemical Science. This journal is © The Royal Society of Chemistry 2017 Supporting Information Conformations of Cyclopentasilane Stereoisomers Control Molecular Junction Conductance Haixing Li,1 Marc H. Garner,2 Zhichun Shangguan,3 Timothy A. Su,4 Madhav Neupane,4 Panpan Li,3 Alexandra Velian,4 Michael L. Steigerwald,4 Shengxiong Xiao,*3 Colin Nuckolls,*3,4 Gemma C. Solomon,*2 Latha Venkataraman*1,4 1 Department of Applied Physics and Applied Mathematics, Columbia University, New York 10027, USA 2 Nano-Science Center and Department of Chemistry, University of Copenhagen, Universitetsparken 5, 2100 Copenhagen Ø, Denmark 3 The Education Ministry Key Lab of Resource Chemistry, Shanghai Key Laboratory of Rare Earth Functional Materials, Optoelectronic Nano Materials and Devices Institute, Department of Chemistry, Shanghai Normal University, Shanghai 200234, China 4 Department of Chemistry, Columbia University, New York 10027 This version of the ESI replaces the previous version that was published on 13th June 2016. Some references in Part IV on Page 8 and 21 are corrected and updated. 1 Table of Contents Table of Contents .............................................................................................. 2 I. Synthetic procedures and characterization of compounds ......................... 4 II. STM-Break Junction experiment details ..................................................... 6 III. Additional Data ......................................................................................... -
Brief Guide to the Nomenclature of Organic Chemistry
1 Brief Guide to the Nomenclature of Table 1: Components of the substitutive name Organic Chemistry (4S,5E)-4,6-dichlorohept-5-en-2-one for K.-H. Hellwich (Germany), R. M. Hartshorn (New Zealand), CH3 Cl O A. Yerin (Russia), T. Damhus (Denmark), A. T. Hutton (South 4 2 Africa). E-mail: [email protected] Sponsoring body: Cl 6 CH 5 3 IUPAC Division of Chemical Nomenclature and Structure suffix for principal hept(a) parent (heptane) one Representation. characteristic group en(e) unsaturation ending chloro substituent prefix 1 INTRODUCTION di multiplicative prefix S E stereodescriptors CHEMISTRY The universal adoption of an agreed nomenclature is a key tool for 2 4 5 6 locants ( ) enclosing marks efficient communication in the chemical sciences, in industry and Multiplicative prefixes (Table 2) are used when more than one for regulations associated with import/export or health and safety. fragment of a particular kind is present in a structure. Which kind of REPRESENTATION The International Union of Pure and Applied Chemistry (IUPAC) multiplicative prefix is used depends on the complexity of the provides recommendations on many aspects of nomenclature.1 The APPLIED corresponding fragment – e.g. trichloro, but tris(chloromethyl). basics of organic nomenclature are summarized here, and there are companion documents on the nomenclature of inorganic2 and Table 2: Multiplicative prefixes for simple/complicated entities polymer3 chemistry, with hyperlinks to original documents. An No. Simple Complicated No. Simple Complicated AND overall -
REGISTRY Database Summary Sheet (DBSS)
SM REGISTRY/ZREGISTRY (CAS REGISTRY ) Subject • All types of inorganic and organic substances, including alloys, coordination Coverage compounds, minerals, mixtures, polymers, salts, high throughput screening (HTS) compounds as well as nucleic acid and protein sequences • Substances included in REGISTRY meet the following criteria: - Identified by CAS as coming from a reputable source, including but not limited to patents, journals, chemical catalogs, and selected substance collections on the web - Described in largely unambiguous terms - Characterized by physical methods or described in a patent document example or claim - Consistent with the laws of atomic covalent organization • Experimental and predicted property data and tags and spectra data File Type Numeric, Structure Features Alerts (SDIs) Biweekly In addition, SMARTracker, an automatic crossfile current-awareness search, (SDI XFILE) using a REGISTRY search profile in CA, HCA, ZCA, CAplus, HCAplus or ZCAplus may be run weekly or biweekly (weekly is the default). CAS Registry Keep & Share SLART Number® Identifiers ® Learning Database STN Easy Structures Record • CAS Registry Numbers • Experimental and predicted property Content • CA index names and commonly used data and tags chemical names and trade names • Spectra • Molecular formulas • List of databases and regulatory listings • Structure diagrams containing information on the substances • Sequence data • Super roles and document type SM • Alloy composition tables information from CAplus • Classes for polymers • Displayable information for 10 most recent references for substances • Ring analysis data File Size More than 140 million organic and inorganic substances; more than 71.1 million sequences (4/18) Coverage Early 1800s to the present Updates Daily Language English Database Chemical Abstracts Service Producer 2540 Olentangy River Road P.O. -
Gas-Phase Chemistry of Methyl-Substituted Silanes in a Hot-Wire Chemical Vapour Deposition Process
University of Calgary PRISM: University of Calgary's Digital Repository Graduate Studies The Vault: Electronic Theses and Dissertations 2013-08-27 Gas-phase Chemistry of Methyl-Substituted Silanes in a Hot-wire Chemical Vapour Deposition Process Toukabri, Rim Toukabri, R. (2013). Gas-phase Chemistry of Methyl-Substituted Silanes in a Hot-wire Chemical Vapour Deposition Process (Unpublished doctoral thesis). University of Calgary, Calgary, AB. doi:10.11575/PRISM/26257 http://hdl.handle.net/11023/891 doctoral thesis University of Calgary graduate students retain copyright ownership and moral rights for their thesis. You may use this material in any way that is permitted by the Copyright Act or through licensing that has been assigned to the document. For uses that are not allowable under copyright legislation or licensing, you are required to seek permission. Downloaded from PRISM: https://prism.ucalgary.ca UNIVERSITY OF CALGARY Gas-phase Chemistry of Methyl-Substituted Silanes in a Hot-wire Chemical Vapour Deposition Process by Rim Toukabri A THESIS SUBMITTED TO THE FACULTY OF GRADUATE STUDIES IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY DEPARTMENT OF CHEMISTRY CALGARY, ALBERTA August, 2013 © Rim Toukabri 2013 Abstract The primary decomposition and secondary gas-phase reactions of methyl- substituted silane molecules, including monomethylsilane (MMS), dimethylsilane (DMS), trimethylsilane (TriMS) and tetramethylsilane (TMS), in hot-wire chemical vapour deposition (HWCVD) processes have been studied using laser ionization methods in combination with time of flight mass spectrometry (TOF-MS). For all four molecules, methyl radical formation and hydrogen molecule formation have been found to be the common decomposition steps on both tungsten (W) and tantalum (Ta) filaments. -
Introduction to NMR Spectroscopy of Proteins
A brief introduction to NMR spectroscopy of proteins By Flemming M. Poulsen 2002 1 Introduction Nuclear magnetic resonance, NMR, and X-ray crystallography are the only two methods that can be applied to the study of three-dimensional molecular structures of proteins at atomic resolution. NMR spectroscopy is the only method that allows the determination of three-dimensional structures of proteins molecules in the solution phase. In addition NMR spectroscopy is a very useful method for the study of kinetic reactions and properties of proteins at the atomic level. In contrast to most other methods NMR spectroscopy studies chemical properties by studying individual nuclei. This is the power of the methods but sometimes also the weakness. NMR spectroscopy can be applied to structure determination by routine NMR techniques for proteins in the size range between 5 and 25 kDa. For many proteins in this size range structure determination is relatively easy, however there are many examples of structure determinations of proteins, which have failed due to problems of aggregation and dynamics and reduced solubility. It is the purpose of these notes to introduce the reader to descriptions and applications of the methods of NMR spectroscopy most commonly applied in scientific studies of biological macromolecules, in particular proteins. The figures 1,2 and 11 are copied from “Multidímensional NMR in Liquids” by F.J.M de Ven (1995)Wiley-VCH The Figure13 and Table 1 have been copied from “NMR of Proteins and Nucleic acis” K. Wüthrich (1986) Wiley Interscience The Figures 20, 21 and 22 have been copied from J. -
Chapter 1: Atoms, Molecules and Ions
Previous Chapter Table of Contents Next Chapter Chapter 1: Atoms, Molecules and Ions Section 1.1: Introduction In this course, we will be studying matter, “the stuff things are made of”. There are many ways to classify matter. For instance, matter can be classified according to the phase, that is, the physical state a material is in. Depending on the pressure and the temperature, matter can exist in one of three phases (solid, liquid, or gas). The chemical structure of a material determines the range of temperatures and pressures under which this material is a solid, a liquid or a gas. Consider water for example. The principal differences between water in the solid, liquid and gas states are simply: 1) the average distance between the water molecules; small in the solid and the liquid and large in the gas and 2) whether the molecules are organized in an orderly three-dimensional array (solid) or not (liquid and gas). Another way to classify matter is to consider whether a substance is pure or not. So, matter can be classified as being either a pure substance or a mixture. A pure substance has unique composition and properties. For example, water is a pure substance (whether from Texas or Idaho, each water molecule always contains 2 atoms of hydrogen for 1 atom of oxygen). Under the same atmospheric pressure and at the same ambient temperature, water always has the same density. We can go a little further and classify mixtures are either homogeneous or heterogeneous. In a homogeneous mixture, for example, as a result of mixing a teaspoon of salt in a glass of water, the composition of the various components and their properties are the same throughout. -
Grignard Reagents and Silanes
GRIGNARD REAGENTS AND SILANES By B. Arkles REPRINTED FROM HANDBOOK OF GRIGNARD REAGENTS by G. Silverman and P. Rakita Pages 667-675 Marcel Dekker, 1996 Gelest, Inc. 612 William Leigh Drive Tullytown, Pa. 19007-6308 Phone: [215] 547-1015 Fax: [215] 547-2484 Grignard Reagents and Silanes 32 Grignard Reagents and Silanes BARRY ARKLES Gelest Inc., Tullytown, Pennsylvania I. INTRODUCTION This review considers two aspects of the interaction of Grignards with silanes. First, focusing on technologies that are still viable within the context of current organosilane and silicone technology, guidelines are provided for silicon-carbon bond formation using Grignard chemistry. Second, the use of silane-blocking agents and their stability in the presence of Grignard reagents employed in organic synthesis is discussed. II. FORMATION OF THE SILICON-CARBON BOND A. Background The genesis of current silane and silicone technology traces back to the Grignard reaction. The first practical synthesis of organosilanes was accomplished by F. Stanley Kipping in 1904 by the Grignard reaction for the formation of the silicon-carbon bond [1]. In an effort totaling 57 papers, he created the basis of modern organosilane chemistry. The development of silicones by Frank Hyde at Corning was based on the hydrolysis of Grignard-derived organosilanes [2]. Dow Corning, the largest manufacturer of silanes and silicones, was formed as a joint venture between Corning Glass, which had silicone product technology, and Dow, which had magnesium and Grignard technology, during World War II. In excess of 10,000 silicon compounds have been synthesized by Grignard reactions. Ironically, despite the versatility of Grignard chemistry for the formation of silicon-carbon bonds, its use in current silane and silicone technology has been supplanted by more efficient and selective processes for the formation of the silicon-carbon bond, notably by the direct process and hydrosilylation reactions. -
Electron Paramagnetic Resonance of Radicals and Metal Complexes. 2. International Conference of the Polish EPR Association. Wars
! U t S - PL — voZ, PL9700944 Warsaw, 9-13 September 1996 ELECTRON PARAMAGNETIC RESONANCE OF RADICALS AND METAL COMPLEXES 2nd International Conference of the Polish EPR Association INSTITUTE OF NUCLEAR CHEMISTRY AND TECHNOLOGY UNIVERSITY OF WARSAW VGL 2 8 Hi 1 2 ORGANIZING COMMITTEE Institute of Nuclear Chemistry and Technology Prof. Andrzej G. Chmielewski, Ph.D., D.Sc. Assoc. Prof. Hanna B. Ambroz, Ph.D., D.Sc. Assoc. Prof. Jacek Michalik, Ph.D., D.Sc. Dr Zbigniew Zimek University of Warsaw Prof. Zbigniew Kqcki, Ph.D., D.Sc. ADDRESS OF ORGANIZING COMMITTEE Institute of Nuclear Chemistry and Technology, Dorodna 16,03-195 Warsaw, Poland phone: (0-4822) 11 23 47; telex: 813027 ichtj pi; fax: (0-4822) 11 15 32; e-mail: [email protected] .waw.pl Abstracts are published in the form as received from the Authors SPONSORS The organizers would like to thank the following sponsors for their financial support: » State Committee of Scientific Research » Stiftung fur Deutsch-Polnische Zusammenarbeit » National Atomic Energy Agency, Warsaw, Poland » Committee of Chemistry, Polish Academy of Sciences, Warsaw, Poland » Committee of Physics, Polish Academy of Sciences, Poznan, Poland » The British Council, Warsaw, Poland » CIECH S.A. » ELEKTRIM S.A. » Broker Analytische Messtechnik, Div. ESR/MINISPEC, Germany 3 CONTENTS CONFERENCE PROGRAM 9 LECTURES 15 RADICALS IN DNA AS SEEN BY ESR SPECTROSCOPY M.C.R. Symons 17 ELECTRON AND HOLE TRANSFER WITHIN DNA AND ITS HYDRATION LAYER M.D. Sevilla, D. Becker, Y. Razskazovskii 18 MODELS FOR PHOTOSYNTHETIC REACTION CENTER: STEADY STATE AND TIME RESOLVED EPR SPECTROSCOPY H. Kurreck, G. Eiger, M. Fuhs, A Wiehe, J. -
How to Read and Interpret FTIR Spectroscope of Organic Material
97| Indonesian JournalIndonesian of Science Journal & Technology of Science &,Volum Technologye 4 Issue 4 ( 11,) (20April19 )2019 97-1 18Page 97-118 Indonesian Journal of Science & Technology Journal homepage: http://ejournal.upi.edu/index.php/ijost/ How to Read and Interpret FTIR Spectroscope of Organic Material Asep Bayu Dani Nandiyanto, Rosi Oktiani, Risti Ragadhita Departemen Kimia, Universitas Pendidikan Indonesia, Jl. Dr. Setiabudi no 229 Bandung 40154, Indonesia Correspondence: E-mail: [email protected] A B S T R A C T S A R T I C L E I N F O Article History: Fourier Transform Infrared (FTIR) has been developed as a Received 10 Jan 2019 tool for the simultaneous determination of organic Revised 20 Jan 2019 components, including chemical bond, as well as organic Accepted 31 Aug 2019 Available online 09 Apr 2019 content (e.g., protein, carbohydrate, and lipid). However, ____________________ until now, there is no further documents for describing the Keywords: detailed information in the FTIR peaks. The objective of this FTIR, study was to demonstrate how to read and assess chemical infrared spectrum, organic material, bond and structure of organic material in the FTIR, in which chemical bond, the analysis results were then compared with the literatures. organic structure. The step-by-step method on how to read the FTIR data was also presented, including reviewing simple to the complex organic materials. This study is potential to be used as a standard information on how to read FTIR peaks in the biochemical and organic materials. © 2019Tim Pengembang Jurnal UPI 1. INTRODUCTION analysis is quite rapid, good in accuracy, and relatively sensitive (Jaggi and Vij, 2006). -
Numerical Methods in Electron Magnetic Resonance
NO0000039 NUMERICAL METHODS IN ELECTRON MAGNETIC RESONANCE ANALYSES AND SIMULATIONS IN QUEST OF STRUCTURAL AND DYNAMICAL PROPERTIES OF FREE RADICALS IN SOLIDS BY ANDERS RASMUS S0RNES Thesis submitted for the degree Doctor scientiarum Department of Physics, University of Oslo 1998 31-18 Preface This thesis encompasses a collection of six theoretical and experimental Electron Magnetic Resonance (EMR) studies of the structure and dynamics of free radicals in solids. Radicals are molecular systems having one or more unpaired electron. Due to their energetically unfavourable open shell configuration, they are highly reactive. Radicals are formed in different ways. They are believed to be present in many chemical reactions as short-lived intermediate products, and they are also produced in interactions of x-radiation with matter, in Compton and photoelectric processes and interactions of their secondary electrons. Longer-lived, quasistable radicals do also exist and these may be used as spin-labels or spin-probes and may be attached to larger molecules and surfaces as measurement probes to examine the environment in their immediate vicinity. EMR is a collective term for a group of spectroscopic techniques inducing and observing transitions between the Zeeman levels of a paramagnetic system, such as a radical situated in an external magnetic field. Whithin the broader concept of EMR, the particular experimental techniques of Electron Paramagnetic Resonance (EPR), ELectron Nuclear DOuble Resonance (ENDOR), Field Swept ENDOR (FSE) and Electron Spin Echo Envelope Modulation (ESEEM) are discussed in this thesis. The focal point of this thesis is the development and use of numerical methods in the analysis, simulation and interpretation of EMR experiments on radicals in solids to uncover the structure, the dynamics and the environment of the system. -
Fourier Transform Infrared (FTIR) Spectroscopy Analysis of Transformer Paper in Mineral Oil-Paper Composite Insulation Under Accelerated Thermal Aging
energies Article Fourier Transform Infrared (FTIR) Spectroscopy Analysis of Transformer Paper in Mineral Oil-Paper Composite Insulation under Accelerated Thermal Aging Abi Munajad * ID , Cahyo Subroto ID and Suwarno ID School of Electrical Engineering and Informatics, Institut Teknologi Bandung, Bandung 40132, Indonesia; [email protected] (C.S.); [email protected] (S.) * Correspondence: [email protected]; Tel.: +62-857-465-76059 Received: 26 December 2017; Accepted: 29 January 2018; Published: 4 February 2018 Abstract: Mineral oil is the most popular insulating liquid for high voltage transformers due to its function as a cooling liquid and an electrical insulator. Kraft paper has been widely used as transformer solid insulation for a long time already. The degradation process of transformer paper due to thermal aging in mineral oil can change the physical and chemical structure of the cellulose paper. Fourier transform infrared (FTIR) spectroscopy analysis was used to identify changes in the chemical structure of transformer paper aged in mineral oil. FTIR results show that the intensity of the peak absorbance of the O–H functional group decreased with aging but the intensity of the peak absorbance of the C–H and C=O functional groups increased with aging. Changes in the chemical structure of the cellulose paper during thermal aging in mineral oil can be analyzed by an oxidation process of the cellulose paper and the reaction process between the carboxylic acids in the mineral oil and the hydroxyl groups on the cellulose. The correlation between the functional groups and the average number of chain scissions of transformer paper gives initial information that the transformer paper performance can be identified by using a spectroscopic technique as a non-destructive diagnostic technique. -
Syllabus Chem 646
SYLLABUS CHEM 646 Course title and number Physical Organic Chemistry, CHEM 646 Term Fall 2019 Meeting times and location MWF 10:20 am – 11:10 am, Room: CHEM 2121 Course Description and Learning Outcomes Prerequisites: Organic Chemistry I and II or equivalent undergraduate organic chemistry courses. Physical Organic Chemistry (CHEM646) is a graduate/senior-undergrad level course of advanced organic chemistry. Physical organic chemistry refers to a discipline of organic chemistry that focuses on the relationship between chemical structure and property/reactivity, in particular, applying experimental and theoretical tools of physical chemistry to the study of organic molecules and reactions. Specific focal points of study include the bonding and molecular orbital theory of organic molecules, stability of organic species, transition states, and reaction intermediates, rates of organic reactions, and non-covalent aspects of solvation and intermolecular interactions. CHEM646 is designed to prepare students for graduate research on broadly defined organic chemistry. This course will provide the students with theoretical and practical frameworks to understand how organic structures impact the properties of organic molecules and the mechanism for organic reactions. By the end of this course, students should be able to: 1. Gain in-depth understanding of the nature of covalent bonds and non-covalent interactions 2. Use molecule orbital theory to interpret the property and reactivity of organic species. 3. Understand the correlation between the structure and physical/chemical properties of organic molecules, such as stability, acidity, and solubility. 4. Predict the reactivity of organic molecules using thermodynamic and kinetic analyses 5. Probe the mechanism of organic reactions using theoretical and experimental approaches.