Ancient DNA Evidence of Population Affinities Casey C. Bennett
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Mitochondrial Haplogroup Background May Influence
Genetics Mitochondrial Haplogroup Background May Influence Southeast Asian G11778A Leber Hereditary Optic Neuropathy Supannee Kaewsutthi,1,2 Nopasak Phasukkijwatana,2,3 Yutthana Joyjinda,1 Wanicha Chuenkongkaew,3,4 Bussaraporn Kunhapan,1 Aung Win Tun,1 Bhoom Suktitipat,1 and Patcharee Lertrit1,4 PURPOSE. To investigate the role of mitochondrial DNA markedly incomplete penetrance. The three most common (mt DNA) background on the expression of Leber hereditary primary LHON mutations, G3460A in ND1, G11778A in ND4, optic neuropathy (LHON) in Southeast Asian carriers of the and T14484C in ND6, account for more than 90% of LHON G11778A mutation. cases worldwide2 with G11778A being the most common. In 3 4–6 METHODS. Complete mtDNA sequences were analyzed from 53 Thailand and other Asian countries, G11778A is responsi- unrelated Southeast Asian G11778A LHON pedigrees in Thai- ble for approximately 90% of LHON families. land and 105 normal Thai controls, and mtDNA haplogroups The sex bias and the marked incomplete penetrance of were determined. Clinical phenotypes were tested for associ- LHON indicate that there must be other factors that modify disease expression. Mitochondrial background,7–8 nuclear ation with mtDNA haplogroup, with adjustment for potential 9–11 12 confounders such as sex and age at onset. background, and environmental factors have been impli- cated in disease expression, although the precise mechanisms RESULTS. mtDNA subhaplogroup B was significantly associated of pathogenesis are largely undefined. with LHON. Follow-up analysis -
Self-Determination for the Basque People
THE HUMAN RIGHT TO SELF DETERMINATION AND THE LONG WALK OF THE BASQUE COUNTRY TO A DEMOCRATIC SCENARIO ―Law is a living deed, not a brilliant honors list of past writers whose work of course compels respect but who cannot, except for a few great minds, be thought to have had such a vision of the future that they could always see beyond their own times‖. Judge Ammoun ―Separate Opinion‖ Advisory Opinion of the ICJ Jon Namibia, 1971 Introduction Let me start with some considerations. The case of the right to self determination is the case of human rights and history shows us that human rights are the cause of the oppressed, the cause of the colonized, the subalterns, and the cause of those on the other side of the borderline. Human rights have always been opposed by those in power, by the states of the capitalist world system. And so the recognized human rights are not but the consequences of long term struggles for non-recognized rights. And same pass with the right to self determination. Those who today consider this right only to be applied to colonies or occupied territories, are the same who opposed to the struggles for national liberation. Those who consider right now the right to self determination recognized in art 1 of the UN International Covenants on Civil and Political rights and Social, Cultural and Ecomic Rights are the same who opposed in the UN to the stablishment of art.1 and those who right now try to limit the right of indigenous peoples to self determination. -
The Basques of Lapurdi, Zuberoa, and Lower Navarre Their History and Their Traditions
Center for Basque Studies Basque Classics Series, No. 6 The Basques of Lapurdi, Zuberoa, and Lower Navarre Their History and Their Traditions by Philippe Veyrin Translated by Andrew Brown Center for Basque Studies University of Nevada, Reno Reno, Nevada This book was published with generous financial support obtained by the Association of Friends of the Center for Basque Studies from the Provincial Government of Bizkaia. Basque Classics Series, No. 6 Series Editors: William A. Douglass, Gregorio Monreal, and Pello Salaburu Center for Basque Studies University of Nevada, Reno Reno, Nevada 89557 http://basque.unr.edu Copyright © 2011 by the Center for Basque Studies All rights reserved. Printed in the United States of America Cover and series design © 2011 by Jose Luis Agote Cover illustration: Xiberoko maskaradak (Maskaradak of Zuberoa), drawing by Paul-Adolph Kaufman, 1906 Library of Congress Cataloging-in-Publication Data Veyrin, Philippe, 1900-1962. [Basques de Labourd, de Soule et de Basse Navarre. English] The Basques of Lapurdi, Zuberoa, and Lower Navarre : their history and their traditions / by Philippe Veyrin ; with an introduction by Sandra Ott ; translated by Andrew Brown. p. cm. Translation of: Les Basques, de Labourd, de Soule et de Basse Navarre Includes bibliographical references and index. Summary: “Classic book on the Basques of Iparralde (French Basque Country) originally published in 1942, treating Basque history and culture in the region”--Provided by publisher. ISBN 978-1-877802-99-7 (hardcover) 1. Pays Basque (France)--Description and travel. 2. Pays Basque (France)-- History. I. Title. DC611.B313V513 2011 944’.716--dc22 2011001810 Contents List of Illustrations..................................................... vii Note on Basque Orthography......................................... -
Different Matrilineal Contributions to Genetic Structure of Ethnic Groups in the Silk Road Region in China
Different Matrilineal Contributions to Genetic Structure of Ethnic Groups in the Silk Road Region in China Yong-Gang Yao,*1 Qing-Peng Kong,* à1 Cheng-Ye Wang,*à Chun-Ling Zhu,* and Ya-Ping Zhang* *Laboratory of Cellular and Molecular Evolution, and Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China; Laboratory for Conservation and Utilization of Bio-resource, Yunnan University, Kunming, China; and àGraduate School of the Chinese Academy of Sciences, Beijing, China Previous studies have shown that there were extensive genetic admixtures in the Silk Road region. In the present study, we analyzed 252 mtDNAs of five ethnic groups (Uygur, Uzbek, Kazak, Mongolian, and Hui) from Xinjiang Province, China (through which the Silk Road once ran) together with some reported data from the adjacent regions in Central Asia. In a simple way, we classified the mtDNAs into different haplogroups (monophyletic clades in the rooted mtDNA tree) according to the available phylogenetic information and compared their frequencies to show the differences among Downloaded from https://academic.oup.com/mbe/article/21/12/2265/1071048 by guest on 27 September 2021 the matrilineal genetic structures of these populations with different demographic histories. With the exception of eight unassigned M*, N*, and R* mtDNAs, all the mtDNA types identified here belonged to defined subhaplogroups of haplogroups M and N (including R) and consisted of subsets of both the eastern and western Eurasian pools, thus providing direct evidence supporting the suggestion that Central Asia is the location of genetic admixture of the East and the West. -
Haplogroup Relationships Between Domestic and Wild Sheep Resolved Using a Mitogenome Panel
Heredity (2011) 106, 700–706 & 2011 Macmillan Publishers Limited All rights reserved 0018-067X/11 www.nature.com/hdy ORIGINAL ARTICLE Haplogroup relationships between domestic and wild sheep resolved using a mitogenome panel JRS Meadows1,3, S Hiendleder2 and JW Kijas1 1CSIRO Livestock Industries, St Lucia, Queensland, Australia and 2School of Agriculture, Food and Wine & Research Centre for Reproductive Health, School of Animal and Veterinary Science, University of Adelaide, Roseworthy, South Australia, Australia Five haplogroups have been identified in domestic sheep 920 000±190 000 years ago based on protein coding through global surveys of mitochondrial (mt) sequence sequence. The utility of various mtDNA components to inform variation, however these group classifications are often the true relationship between sheep was also examined with based on small fragments of the complete mtDNA sequence; Bayesian, maximum likelihood and partitioned Bremmer sup- partial control region or the cytochrome B gene. This study port analyses. The control region was found to be the mtDNA presents the complete mitogenome from representatives of component, which contributed the highest amount of support to each haplogroup identified in domestic sheep, plus a sample the tree generated using the complete data set. This study of their wild relatives. Comparison of the sequence success- provides the nucleus of a mtDNA mitogenome panel, which can fully resolved the relationships between each haplogroup be used to assess additional mitogenomes and serve as a and provided insight into the relationship with wild sheep. reference set to evaluate small fragments of the mtDNA. The five haplogroups were characterised as branching Heredity (2011) 106, 700–706; doi:10.1038/hdy.2010.122; independently, a radiation that shared a common ancestor published online 13 October 2010 Keywords: Ovis aries; domestication; mitochondria; genome; diversity Introduction Pedrosa et al., 2005; Pereira et al., 2006; Tapio et al., 2006; Meadows et al., 2007). -
The Genetic History of the Otomi in the Central Mexican Valley
University of Pennsylvania ScholarlyCommons Anthropology Senior Theses Department of Anthropology Spring 2013 The Genetic History Of The Otomi In The Central Mexican Valley Haleigh Zillges University of Pennsylvania Follow this and additional works at: https://repository.upenn.edu/anthro_seniortheses Part of the Anthropology Commons Recommended Citation Zillges, Haleigh, "The Genetic History Of The Otomi In The Central Mexican Valley" (2013). Anthropology Senior Theses. Paper 133. This paper is posted at ScholarlyCommons. https://repository.upenn.edu/anthro_seniortheses/133 For more information, please contact [email protected]. The Genetic History Of The Otomi In The Central Mexican Valley Abstract The Otomí, or Hñäñhü, is an indigenous ethnic group in the Central Mexican Valley that has been historically marginalized since before Spanish colonization. To investigate the extent by which historical, geographic, linguistic, and cultural influences shaped biological ancestry, I analyzed the genetic variation of 224 Otomí individuals residing in thirteen Otomí villages. Results indicate that the majority of the mitochondrial DNA (mtDNA) haplotypes belong to the four major founding lineages, A2, B2, C1, and D1, reflecting an overwhelming lack of maternal admixture with Spanish colonizers. Results also indicate that at an intra-population level, neither geography nor linguistics played a prominent role in shaping maternal biological ancestry. However, at an inter-population level, geography was found to be a more influential determinant. Comparisons of Otomí genetic variation allow us to reconstruct the ethnic history of this group, and to place it within a broader-based Mesoamerican history. Disciplines Anthropology This thesis or dissertation is available at ScholarlyCommons: https://repository.upenn.edu/anthro_seniortheses/133 THE GENETIC HISTORY OF THE OTOMI IN THE CENTRAL MEXICAN VALLEY By Haleigh Zillges In Anthropology Submitted to the Department of Anthropology University of Pennsylvania Thesis Advisor: Dr. -
Phylogenetic Resolution with Mtdna D-Loop Vs. HVS 1: Methodological Approaches in Anthropological Genetics Utilizing Four Siberian Populations
Phylogenetic Resolution with mtDNA D-loop vs. HVS 1: Methodological Approaches in Anthropological Genetics Utilizing Four Siberian Populations By Stephen M Johnson Submitted to the graduate degree program in Anthropology and the Graduate Faculty of the University of Kansas in partial fulfillment of the requirements for the degree of Master of Arts. ________________________________ Chairperson: Michael H Crawford, PhD ________________________________ Bartholomew Dean, PhD ________________________________ James H Mielke, PhD Date Defended: 5 July 2013 The Thesis Committee for Stephen M Johnson certifies that this is the approved version of the following thesis: Phylogenetic Resolution with mtDNA D-loop vs. HVS 1: Methodological Approaches in Anthropological Genetics Utilizing Four Siberian Populations ________________________________ Chairperson: Dr. Michael H Crawford, PhD Date approved: 5 July 2013 ii ABSTRACT Mitochondrial DNA is a useful genetic marker for answering evolutionary questions due to its high copy number, maternal mode of inheritance, and its high rate of evolution (Stoneking and Soodyall, 1996). The vast majority of research on mitochondrial DNA in anthropological studies has utilized the hypervariable segment 1 (HVS 1) to reconstruct population history and structure, explore population ancestry, construct phylogenies, and answer questions about the origins of prehistoric populations. A common debate in this field is whether better phylogenetic resolution can be obtained by the use of additional sequence data or genomic -
Population Genetics and Anthropology
Abstracts S24 Poster Group 7 - Immune Regulation 94 HUMORAL AND CELLULAR IMMUNE RESPONSE 93 MECHANISMS DIRECTED AGAINST THE FETUS SUPERIOR T CELL SUPPRESSION BY RAPAMYCIN+FK506, CONTRIBUTE TO PLACENTAL ABRUPTION. OVER RAPAMYCIN+CSA, DUE TO ABROGATED CTL INDUCTION, IMPAIRED MEMORY RESPONSES AND Andrea Steinborn, Cyrus Sayehli, Christoph Sohn, Erhard Seifried, PERSISTENT APOPTOSIS Edgar Schmitt, Manfred Kaufmann, Christian Seidl. Department of Obstetrics and Gynecology, University of Frankfurt; Hans JPM Koenen, Etienne CHJ Michielsen, Jochem Verstappen, Institute of Immunology, University of Mainz; Department of Esther Fasse and Irma Joosten. Department for Blood Transfusion Transplantation Immunology, RCBDS, Germany and Transplantation Immunology, University Medical Center Placental abruption is an unpredictable severe complication in Nijmegen, The Netherlands. pregnancy. In order to investigate the possibility that the activation Immunosuppressive therapy is best achieved with a combination of agents of the fetal non-adaptive immune system may be involved in the targeting multiple activation steps of T-cells. In transplantation, Cyclosporin-A pathogenesis of this disease, IL-6 release from cord blood (CsA) or Tacrolimus (FK506) are successfully combined with Rapamycin monocytes was examined by intracellular cytokine staining and (Rap). Rap and CsA were first considered for combination therapy because flow cytometric analysis. Our results demonstrate that preterm FK506 and Rap target the same intracellular protein and thus may act in an antagonistic way. However, in clinical studies FK506+Rap proved to be placental abruption (n=15) in contrast to uncontrollable preterm effective. To date, there is no in vitro data supporting these in vivo findings and labour (n=33) is associated with significantly (p<0.001) increased it is unclear whether the observed effects are T cell mediated. -
Mtdna Evidence: Genetic Background Associated with Related Populations at High Risk for Esophageal Cancer Between Chaoshan and T
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Genomics 90 (2007) 474–481 www.elsevier.com/locate/ygeno mtDNA evidence: Genetic background associated with related populations at high risk for esophageal cancer between Chaoshan and Taihang Mountain areas in China ⁎ Xiao-Yun Li a,1, Min Su a, ,1, Hai-Hua Huang a, Hui Li b, Dong-Ping Tian a, Yu-Xia Gao a a Department of Pathology, Key Immunopathology Laboratory of Guangdong Province, Shantou University Medical College, Shantou, Guangdong 515031, China b State Key Laboratory of Genetic Engineering and Center for Anthropological Studies, School of Life Sciences, Fudan University, Shanghai, Jiangsu 200433, China Received 4 April 2007; accepted 20 June 2007 Available online 9 August 2007 Abstract There are three major geographic regions in China known for their high incidences of esophageal cancer (EC): the Taihang Mountain range of north-central China, the Minnan area of Fujian province, and the Chaoshan plain of Guangdong province. Historically, waves of great population migrations from north-central China through coastal Fujian to the Chaoshan plain were recorded. To study the genetic relationship among the related EC high-risk populations, we analyzed mitochondrial DNA (mtDNA) haplogroups based on 30 EC patients from Chaoshan and used control samples from the high-risk populations, including 48, 73, and 89 subjects from the Taihang, Fujian, and Chaoshan areas, respectively. The principal component of all haplogroups, correlation analysis of haplogroup frequency distributions between populations, and haplogroup D network analysis showed that compared with other Chinese populations, populations in the three studied areas are genetically related. -
The Study Into Individual Classification and Biological Distance Using Cranial Morphology of a Basque Burial Population
University of Nevada, Reno A Craniometric Analysis of Basque Skulls from the Cathedral of Santa Maria, Vitoria-Gasteiz: Biological Distance and Population History A thesis submitted in partial fulfillment of the requirements for the degree of Master of Arts in Anthropology by Jennifer J. Janzen Dr. G. Richard Scott/Thesis Advisor August 2011 Copyright by Jennifer J. Janzen 2011 All Rights Reserved THE GRADUATE SCHOOL We recommend that the thesis prepared under our supervision by JENNIFER J. JANZEN entitled A Craniometric Analysis Of Basque Skulls From The Cathedral Of Santa Maria, Vitoria-Gasteiz: Biological Distance And Population History be accepted in partial fulfillment of the requirements for the degree of MASTER OF ARTS G. Richard Scott, Ph.D., Advisor Gary Haynes, Ph.D., Committee Member David Wilson, Ph.D., Graduate School Representative Marsha H. Read, Ph. D., Dean, Graduate School August, 2011 i Abstract The origins and uniqueness of the Basque have long puzzled anthropologists and other scholars of human variation. Straddling the border between France and Spain, Basque country is home to a people genetically, linguistically and culturally distinct from neighboring populations. The craniometrics of a burial population from a Basque city were subjected to cluster analysis to identify the pattern of relationships between Spanish Basques and other populations of the Iberian Peninsula, Europe, and the world. Another method of affinity assessment -- discriminant function analysis – was employed to classify each individual cranium into one population from among a wide array of groups in a worldwide craniometric database. In concert with genetic and linguistic studies, craniometric analyses find Basques are distinct among Iberian and European populations, with admixture increasing in the modern era. -
Cultural Variation Impacts Paternal and Maternal Genetic Lineages of the Hmong-Mien and Sino-Tibetan Groups from Thailand
European Journal of Human Genetics https://doi.org/10.1038/s41431-020-0693-x ARTICLE Cultural variation impacts paternal and maternal genetic lineages of the Hmong-Mien and Sino-Tibetan groups from Thailand 1,2 3 4 2 1 Wibhu Kutanan ● Rasmi Shoocongdej ● Metawee Srikummool ● Alexander Hübner ● Thanatip Suttipai ● 1 5,6 2 Suparat Srithawong ● Jatupol Kampuansai ● Mark Stoneking Received: 8 February 2020 / Revised: 17 June 2020 / Accepted: 26 June 2020 © The Author(s) 2020. This article is published with open access Abstract The Hmong-Mien (HM) and Sino-Tibetan (ST) speaking groups are known as hill tribes in Thailand; they were the subject of the first studies to show an impact of patrilocality vs. matrilocality on patterns of mitochondrial (mt) DNA vs. male- specific portion of the Y chromosome (MSY) variation. However, HM and ST groups have not been studied in as much detail as other Thai groups; here we report and analyze 234 partial MSY sequences (∼2.3 mB) and 416 complete mtDNA sequences from 14 populations that, when combined with our previous published data, provides the largest dataset yet for the hill tribes. We find a striking difference between Hmong and IuMien (Mien-speaking) groups: the Hmong are genetically 1234567890();,: 1234567890();,: different from both the IuMien and all other Thai groups, whereas the IuMien are genetically more similar to other linguistic groups than to the Hmong. In general, we find less of an impact of patrilocality vs. matrilocality on patterns of mtDNA vs. MSY variation than previous studies. However, there is a dramatic difference in the frequency of MSY and mtDNA lineages of Northeast Asian (NEA) origin vs. -
Maximizing Mtdna Testing Potential with the Generation of High-Quality Mtgenome Reference Data Author(S): Rebecca S
The author(s) shown below used Federal funding provided by the U.S. Department of Justice to prepare the following resource: Document Title: Maximizing mtDNA Testing Potential with the Generation of High-Quality mtGenome Reference Data Author(s): Rebecca S. Just, Walther Parson, Jodi A. Irwin Document Number: 253077 Date Received: July 2019 Award Number: 2011-MU-MU-K402 This resource has not been published by the U.S. Department of Justice. This resource is being made publically available through the Office of Justice Programs’ National Criminal Justice Reference Service. Opinions or points of view expressed are those of the author(s) and do not necessarily reflect the official position or policies of the U.S. Department of Justice. Final Technical Report to the National Institute of Justice on Award Number 2011-MU-MU-K402 Maximizing mtDNA Testing Potential with the Generation of High-Quality mtGenome Reference Data Authors: a,b c,d a,b,e Rebecca S. Just , Walther Parson and Jodi A. Irwin aArmed Forces DNA Identification Laboratory, 115 Purple Heart Dr., Dover AFB, DE, 19902 bAmerican Registry of Pathology, 9210 Corporate Blvd., Suite 120, Rockville, MD, 20850 cInstitute of Legal Medicine, Innsbruck Medical University, Mllerstrasse 44, Innsbruck, Austria dPenn State Eberly College of Science, 517 Thomas Building, University Park, PA, 16802 eFederal Bureau of Investigation, 2501 Investigation Parkway, Quantico, VA 22135 Recipient Organization: American Registry of Pathology 9210 Corporate Blvd., Suite 120 Rockville, MD 20850 Project Period: April 1, 2011 - March 31, 2015 This resource was prepared by the author(s) using Federal funds provided by the U.S.