Aggregatibacter Actinomycetemcomitans: Clinical Significance of a Pathobiont Subjected to Ample Changes in Classification and Nomenclature
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Identification of Pasteurella Species and Morphologically Similar Organisms
UK Standards for Microbiology Investigations Identification of Pasteurella species and Morphologically Similar Organisms Issued by the Standards Unit, Microbiology Services, PHE Bacteriology – Identification | ID 13 | Issue no: 3 | Issue date: 04.02.15 | Page: 1 of 28 © Crown copyright 2015 Identification of Pasteurella species and Morphologically Similar Organisms Acknowledgments UK Standards for Microbiology Investigations (SMIs) are developed under the auspices of Public Health England (PHE) working in partnership with the National Health Service (NHS), Public Health Wales and with the professional organisations whose logos are displayed below and listed on the website https://www.gov.uk/uk- standards-for-microbiology-investigations-smi-quality-and-consistency-in-clinical- laboratories. SMIs are developed, reviewed and revised by various working groups which are overseen by a steering committee (see https://www.gov.uk/government/groups/standards-for-microbiology-investigations- steering-committee). The contributions of many individuals in clinical, specialist and reference laboratories who have provided information and comments during the development of this document are acknowledged. We are grateful to the Medical Editors for editing the medical content. For further information please contact us at: Standards Unit Microbiology Services Public Health England 61 Colindale Avenue London NW9 5EQ E-mail: [email protected] Website: https://www.gov.uk/uk-standards-for-microbiology-investigations-smi-quality- and-consistency-in-clinical-laboratories UK Standards for Microbiology Investigations are produced in association with: Logos correct at time of publishing. Bacteriology – Identification | ID 13 | Issue no: 3 | Issue date: 04.02.15 | Page: 2 of 28 UK Standards for Microbiology Investigations | Issued by the Standards Unit, Public Health England Identification of Pasteurella species and Morphologically Similar Organisms Contents ACKNOWLEDGMENTS ......................................................................................................... -
Thesis Final
THESIS/DISSERTATION APPROVED BY 4-24-2020 Barbara J. O’Kane Date Barbara J. O’Kane, MS, Ph.D, Chair Margaret Jergenson Margret A. Jergenson, DDS Neil Norton Neil S. Norton, BA, Ph.D. Gail M. Jensen, Ph.D., Dean i COMPARISON OF PERIODONTIUM AMONG SUBJECTS TREATED WITH CLEAR ALIGNERS AND CONVENTIONAL ORTHODONTICS By: Mark S. Jones A THESIS Presented to the Faculty of The Graduate College at Creighton University In Partial Fulfillment of Requirements For the Degree of Master of Science in the Department of Oral Biology Under the Supervision of Dr. Marcelo Mattos Advising from: Dr. Margaret Jergenson, Dr. Neil S. Norton, and Dr. Barbara O’Kane Omaha, Nebraska 2020 i iii Abstract INTRODUCTION: With the wider therapeutic use of clear aligners the need to investigate the periodontal health status and microbiome of clear aligners’ patients in comparison with users of fixed orthodontic has arisen and is the objective of this thesis. METHODS: A clinical periodontal evaluation was performed, followed by professional oral hygiene treatment on a patient under clear aligner treatment, another under fixed orthodontics and two controls that never received any orthodontic therapy. One week after, supragingival plaque, swabs from the orthodontic devices, and saliva samples were collected from each volunteer for further 16s sequencing and microbiome analysis. RESULTS: All participants have overall good oral hygiene. However, our results showed increases in supragingival plaque, higher number of probing depths greater than 3mm, higher number of bleeding sites on probing, and a higher amount of gingival recession in the subject treated with fixed orthodontics. A lower bacterial count was observed colonizing the clear aligners, with less diversity than the other samples analyzed. -
Product Sheet Info
Product Information Sheet for HM-206 Aggregatibacter aphrophilus, Oral Taxon immediately upon arrival. For long-term storage, the vapor phase of a liquid nitrogen freezer is recommended. Freeze- 545, Strain F0387 thaw cycles should be avoided. Catalog No. HM-206 Growth Conditions: Media: For research use only. Not for human use. Haemophilus Test medium or equivalent Chocolate agar or equivalent Contributor: Incubation: Jacques Izard, Assistant Member of the Staff, Department of Temperature: 37°C Molecular Genetics, The Forsyth Institute, Boston, Atmosphere: Aerobic with 5% CO2 Massachusetts, USA Propagation: 1. Keep vial frozen until ready for use, then thaw. Manufacturer: 2. Transfer the entire thawed aliquot into a single tube of broth. BEI Resources 3. Use several drops of the suspension to inoculate an agar slant and/or plate. Product Description: 4. Incubate the tube, slant and/or plate at 37°C for 24 to Bacteria Classification: Pasteurellaceae, Aggregatibacter 48 hours. Species: Aggregatibacter aphrophilus (formerly Haemophilus 1 aphrophilus) Citation: Subtaxon: Oral Taxon 545 Acknowledgment for publications should read “The following Strain: F0387 reagent was obtained through BEI Resources, NIAID, NIH as Original Source: Aggregatibacter aphrophilus (A. part of the Human Microbiome Project: Aggregatibacter aphrophilus), Oral Taxon 545, strain F0387 was isolated in aphrophilus, Oral Taxon 545, Strain F0387, HM-206.” 1984 from the subgingival dental plaque, at a healthy site, 2,3 of a 24-year-old female patient in the United States. Comments: A. aphrophilus, Oral Taxon 545, strain F0387 Biosafety Level: 1 (HMP ID 9335) is a reference genome for The Human Appropriate safety procedures should always be used with Microbiome Project (HMP). -
Bacterial Diversity and Functional Analysis of Severe Early Childhood
www.nature.com/scientificreports OPEN Bacterial diversity and functional analysis of severe early childhood caries and recurrence in India Balakrishnan Kalpana1,3, Puniethaa Prabhu3, Ashaq Hussain Bhat3, Arunsaikiran Senthilkumar3, Raj Pranap Arun1, Sharath Asokan4, Sachin S. Gunthe2 & Rama S. Verma1,5* Dental caries is the most prevalent oral disease afecting nearly 70% of children in India and elsewhere. Micro-ecological niche based acidifcation due to dysbiosis in oral microbiome are crucial for caries onset and progression. Here we report the tooth bacteriome diversity compared in Indian children with caries free (CF), severe early childhood caries (SC) and recurrent caries (RC). High quality V3–V4 amplicon sequencing revealed that SC exhibited high bacterial diversity with unique combination and interrelationship. Gracillibacteria_GN02 and TM7 were unique in CF and SC respectively, while Bacteroidetes, Fusobacteria were signifcantly high in RC. Interestingly, we found Streptococcus oralis subsp. tigurinus clade 071 in all groups with signifcant abundance in SC and RC. Positive correlation between low and high abundant bacteria as well as with TCS, PTS and ABC transporters were seen from co-occurrence network analysis. This could lead to persistence of SC niche resulting in RC. Comparative in vitro assessment of bioflm formation showed that the standard culture of S. oralis and its phylogenetically similar clinical isolates showed profound bioflm formation and augmented the growth and enhanced bioflm formation in S. mutans in both dual and multispecies cultures. Interaction among more than 700 species of microbiota under diferent micro-ecological niches of the human oral cavity1,2 acts as a primary defense against various pathogens. Tis has been observed to play a signifcant role in child’s oral and general health. -
Actinomyces Naeslundii and Aggregatibacter Aphrophilus Brain Abscess in an Adolescent
Arch Clin Med Case Rep 2019; 3 (6): 409-413 DOI: 10.26502/acmcr.96550112 Case Report Actinomyces Naeslundii and Aggregatibacter Aphrophilus Brain Abscess in an Adolescent Michael Croix1, Christopher Schwarz2, Ryan Breuer3,4, Amanda B. Hassinger3,4, Kunal Chadha5, Mark Daniel Hicar4,6 1Division of Internal Medicine and Pediatrics, University at Buffalo. Buffalo, New York, USA 2Division of Emergency Medicine, University at Buffalo. Buffalo, New York, USA 3Division of Pediatric Critical Care, John R. Oishei Children’s Hospital. Buffalo, New York, USA 4Department of Pediatrics, University at Buffalo. Buffalo, New York, USA 5Division of Pediatric Emergency Medicine, University at Buffalo. Buffalo, New York, USA 6Division of Pediatric Infectious Diseases, University at Buffalo. Buffalo, New York, USA *Corresponding Authors: Dr. Mark Daniel Hicar, Department of Pediatrics, Jacobs School of Medicine and Biomedical Sciences, University at Buffalo, 1001 Main Street, Buffalo, NY, 14203 USA, Tel: (716) 323-0150; Fax: (716) 888-3804; E-mail: [email protected] (or) [email protected] Dr. Michael Croix, Division of Internal Medicine and Pediatrics, 300 Linwood Ave, Buffalo, NY, 14209 USA, Tel: (217) 840-5750; Fax: (716) 888-3804; E-mail: [email protected] Received: 20 July 2019; Accepted: 02 August 2019; Published: 04 November 2019 Abstract We report the case of a child with a brain abscess from which Actinomyces naeslundii and Aggregatibacter aphrophilus were isolated. The is the first case describing A. naeslundii causing a brain abscess. This case highlights the association of these two organisms which may affect antibiotic choice and therapy length. Keywords: Brain; Abscess; Actinomyces; Aggregatibacter 1. Case Report A 13 year old male with no known past medical history initially presented to the Emergency Department with one week of headache, nausea, and vomiting. -
Type of the Paper (Article
Supplementary Materials S1 Clinical details recorded, Sampling, DNA Extraction of Microbial DNA, 16S rRNA gene sequencing, Bioinformatic pipeline, Quantitative Polymerase Chain Reaction Clinical details recorded In addition to the microbial specimen, the following clinical features were also recorded for each patient: age, gender, infection type (primary or secondary, meaning initial or revision treatment), pain, tenderness to percussion, sinus tract and size of the periapical radiolucency, to determine the correlation between these features and microbial findings (Table 1). Prevalence of all clinical signs and symptoms (except periapical lesion size) were recorded on a binary scale [0 = absent, 1 = present], while the size of the radiolucency was measured in millimetres by two endodontic specialists on two- dimensional periapical radiographs (Planmeca Romexis, Coventry, UK). Sampling After anaesthesia, the tooth to be treated was isolated with a rubber dam (UnoDent, Essex, UK), and field decontamination was carried out before and after access opening, according to an established protocol, and shown to eliminate contaminating DNA (Data not shown). An access cavity was cut with a sterile bur under sterile saline irrigation (0.9% NaCl, Mölnlycke Health Care, Göteborg, Sweden), with contamination control samples taken. Root canal patency was assessed with a sterile K-file (Dentsply-Sirona, Ballaigues, Switzerland). For non-culture-based analysis, clinical samples were collected by inserting two paper points size 15 (Dentsply Sirona, USA) into the root canal. Each paper point was retained in the canal for 1 min with careful agitation, then was transferred to −80ºC storage immediately before further analysis. Cases of secondary endodontic treatment were sampled using the same protocol, with the exception that specimens were collected after removal of the coronal gutta-percha with Gates Glidden drills (Dentsply-Sirona, Switzerland). -
Phylogenomic and Molecular Demarcation of the Core Members of the Polyphyletic Pasteurellaceae Genera Actinobacillus, Haemophilus,Andpasteurella
Hindawi Publishing Corporation International Journal of Genomics Volume 2015, Article ID 198560, 15 pages http://dx.doi.org/10.1155/2015/198560 Research Article Phylogenomic and Molecular Demarcation of the Core Members of the Polyphyletic Pasteurellaceae Genera Actinobacillus, Haemophilus,andPasteurella Sohail Naushad, Mobolaji Adeolu, Nisha Goel, Bijendra Khadka, Aqeel Al-Dahwi, and Radhey S. Gupta Department of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, ON, Canada L8N 3Z5 Correspondence should be addressed to Radhey S. Gupta; [email protected] Received 5 November 2014; Revised 19 January 2015; Accepted 26 January 2015 Academic Editor: John Parkinson Copyright © 2015 Sohail Naushad et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The genera Actinobacillus, Haemophilus, and Pasteurella exhibit extensive polyphyletic branching in phylogenetic trees and do not represent coherent clusters of species. In this study, we have utilized molecular signatures identified through comparative genomic analyses in conjunction with genome based and multilocus sequence based phylogenetic analyses to clarify the phylogenetic and taxonomic boundary of these genera. We have identified large clusters of Actinobacillus, Haemophilus, and Pasteurella species which represent the “sensu stricto” members of these genera. We have identified 3, 7, and 6 conserved signature indels (CSIs), which are specifically shared by sensu stricto members of Actinobacillus, Haemophilus, and Pasteurella, respectively. We have also identified two different sets of CSIs that are unique characteristics of the pathogen containing genera Aggregatibacter and Mannheimia, respectively. It is now possible to demarcate the genera Actinobacillus sensu stricto, Haemophilus sensu stricto, and Pasteurella sensu stricto on the basis of discrete molecular signatures. -
Aggregatibacter Actinomycetemcomitans Aggregatibacter Anders Johansson and Joseph M
Aggregatibacter actinomycetemcomitans • Anders Johansson and Joseph M. DiRienzo Aggregatibacter actinomycetemcomitans Gram-Negative Bacterial Pathogen Edited by Anders Johansson and Joseph M. DiRienzo Printed Edition of the Special Issue Published in Pathogens www.mdpi.com/journal/pathogens Aggregatibacter actinomycetemcomitans— Gram-Negative Bacterial Pathogen Aggregatibacter actinomycetemcomitans— Gram-Negative Bacterial Pathogen Editors Anders Johansson Joseph M. DiRienzo MDPI • Basel • Beijing • Wuhan • Barcelona • Belgrade • Manchester • Tokyo • Cluj • Tianjin Editors Anders Johansson Joseph M. DiRienzo Umea˚ University University of Pennsylvania Sweden USA Editorial Office MDPI St. Alban-Anlage 66 4052 Basel, Switzerland This is a reprint of articles from the Special Issue published online in the open access journal Pathogens (ISSN 2076-0817) (available at: https://www.mdpi.com/journal/pathogens/special issues/Aggregatibacter actinomycetemcomitans). For citation purposes, cite each article independently as indicated on the article page online and as indicated below: LastName, A.A.; LastName, B.B.; LastName, C.C. Article Title. Journal Name Year, Article Number, Page Range. ISBN 978-3-03943-376-6 (Pbk) ISBN 978-3-03943-377-3 (PDF) c 2020 by the authors. Articles in this book are Open Access and distributed under the Creative Commons Attribution (CC BY) license, which allows users to download, copy and build upon published articles, as long as the author and publisher are properly credited, which ensures maximum dissemination and a wider impact of our publications. The book as a whole is distributed by MDPI under the terms and conditions of the Creative Commons license CC BY-NC-ND. Contents About the Editors .............................................. vii Preface to ”Aggregatibacter actinomycetemcomitans—Gram-Negative Bacterial Pathogen” . -
Of the Human Oral Microbiome Using Cultivation-Dependent and –Independent Approaches
University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Doctoral Dissertations Graduate School 8-2019 Investigating the microbial “dark matter” of the human oral microbiome using cultivation-dependent and –independent approaches Karissa Cross University of Tennessee, [email protected] Follow this and additional works at: https://trace.tennessee.edu/utk_graddiss Recommended Citation Cross, Karissa, "Investigating the microbial “dark matter” of the human oral microbiome using cultivation- dependent and –independent approaches. " PhD diss., University of Tennessee, 2019. https://trace.tennessee.edu/utk_graddiss/5637 This Dissertation is brought to you for free and open access by the Graduate School at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Doctoral Dissertations by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. To the Graduate Council: I am submitting herewith a dissertation written by Karissa Cross entitled "Investigating the microbial “dark matter” of the human oral microbiome using cultivation-dependent and –independent approaches." I have examined the final electronic copy of this dissertation for form and content and recommend that it be accepted in partial fulfillment of the equirr ements for the degree of Doctor of Philosophy, with a major in Microbiology. Mircea Podar, Major Professor We have read this dissertation and recommend its acceptance: Heidi Goodrich-Blair, Erik Zinser, Frank Loeffler, Stephen Kania Accepted for the Council: Dixie L. Thompson Vice Provost and Dean of the Graduate School (Original signatures are on file with official studentecor r ds.) Investigating the microbial “dark matter” of the human oral microbiome using cultivation-dependent and –independent approaches A Dissertation Presented for the Doctor of Philosophy Degree The University of Tennessee, Knoxville Karissa Lynn Cross August 2019 Copyright © 2019 by Karissa Lynn Cross All rights reserved. -
The Pangenome Diversity, Dynamics and Evolution of Genomes the Pangenome Hervé Tettelin • Duccio Medini Editors
Hervé Tettelin Duccio Medini Editors The Pangenome Diversity, Dynamics and Evolution of Genomes The Pangenome Hervé Tettelin • Duccio Medini Editors The Pangenome Diversity, Dynamics and Evolution of Genomes Editors Hervé Tettelin Duccio Medini Department of Microbiology and GSK Vaccines R&D Immunology, Institute for Genome Siena, Italy Sciences University of Maryland School of Medicine Baltimore, Maryland, USA ISBN 978-3-030-38280-3 ISBN 978-3-030-38281-0 (eBook) https://doi.org/10.1007/978-3-030-38281-0 This book is an open access publication. © The Editor(s) (if applicable) and The Author(s) 2020. Open Access This book is licensed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence and indicate if changes were made. The images or other third party material in this book are included in the book’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the book’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. The use of general descriptive names, registered names, trademarks, service marks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. -
(Actinobacillus) Actinomycetemcomitans
J Ind Microbiol Biotechnol (2008) 35:103–110 DOI 10.1007/s10295-007-0271-z ORIGINAL PAPER Actinomycetemcomitin: a new bacteriocin produced by Aggregatibacter (Actinobacillus) actinomycetemcomitans Francisca Lúcia Lima · Maria Auxiliadora Roque de Carvalho · Ana Carolina Morais Apolônio · Marcelo Porto Bemquerer · Marcelo Matos Santoro · Jamil Silvano Oliveira · Celuta Sales Alviano · Luiz de Macêdo Farias Received: 9 July 2007 / Accepted: 18 October 2007 / Published online: 8 November 2007 © Society for Industrial Microbiology 2007 Abstract Aggregatibacter (Actinobacillus) actinomyce- has a molecular mass of 20.3 KDa and it represents a new temcomitans P7–20 strain isolated from a periodontally bacteriocin from A. actinomycetemcomitans. diseased patient has produced a bacteriocin (named as actinomycetemcomitin) that is active against Peptostrepto- Keywords Aggregatibacter (Actinobacillus) coccus anaerobius ATCC 27337. Actinomycetemcomitin actinomycetemcomitans · Bacteriocin · was produced during exponential and stationary growth Actinomycetemcomitin phases, and its amount decreased until it disappeared during the decline growth phase. It was puriWed by ammonium sul- phate precipitation (30–60% saturation), and further by Introduction FPLC (mono-Q ionic exchange and Phenyl Superose hydrophobic interaction) and HPLC (C-18 reversed-phase). Aggregatibacter (formerly Actinobacillus) actinomycetem- This bacteriocin loses its activity after incubation at a pH comitans is a microorganism associated with various below 7.0 or above 8.0, following heating for 30 min at diseases, particularly early-onset periodontitis [27, 35, 40, 45°C, and after treatment with proteolytic enzymes such as 33]. This microorganism produces a number of virulence trypsin, -chymotrypsin, and papain. Actinomycetemcomitin factors, including LPS, adhesins, leukotoxin, colagenase and invasins [11, 36]. The relationship between A. actinomycetemcomitans and F. L. -
Brain Abscess Due to Aggregatibacter Aphrophilus and Bacteroides Uniformis
Case report Acta Medica Academica 2015;44(2):181-185 DOI: 10.5644/ama2006-124.144 Brain abscess due to Aggregatibacter aphrophilus and Bacteroides uniformis Maja Bogdan1*, Vlasta Zujić Atalić1, Ivan Hećimović2,3, Dubravka Vuković1 1Institute of Public Health for the Objective. The aim of this report was to describe the occurrence of a Osijek-Baranja County, Department of bacterial brain abscess in a healthy individual, without any predispos- Microbiology, Osijek, Croatia, 2University ing condition. Case report. A thirteen-year old boy was admitted to Hospital Center Osijek, Department of the Department of Neurosurgery after the onset of vomiting, headache Neurosurgery, Osijek, Croatia, 3University and dizziness. A neurological deficit was detected during the physi- “J. J. Strossmayer”, School of Medicine cal examination so urgent magnetic resonance imaging of the brain Department of Neurosurgery, Osijek was performed, revealing an intrahemispheric, right positioned soli- Croatia tary expansive mass with ring enhancement. Purulent material was obtained during osteoplastic craniotomy with total extirpation of the *Corresponding author: brain abscess. Aggregatibacter aphrophilus and Bacteroides uniformis [email protected] were isolated. The patient’s general condition improved and the neu- Tel.: + 385 31 225 772 rological deficit subsided as a result of the prompt recognition and Fax.: + 385 31 206 870 treatment of this life threatening condition. Conclusion. To achieve Received: 5 August 2015 a favourable clinical outcome, prompt recognition and surgical treat- Accepted: 23 September 2015 ment of a brain abscess are of primary importance,followed by admin- istration of appropriate antimicrobial therapy. To our best knowledge, Key words: Child ■ Haemophilus this is the first report of this combination of microorganisms as the ■ Oropharynx ■ Odontogenic origin.