Factors Affecting Experimental Streptococcus Agalactiae Infection in Tilapia, Oreochromis Niloticus
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Streptococcus Agalactiae Using Strand Invasion Based Amplification (SIBA®) Method
Sanna Hirvonen Rapid detection of Streptococcus agalactiae using Strand Invasion Based Amplification (SIBA®) Method Helsinki Metropolia University of Applied Sciences Bachelor of Engineering Biotechnology and Food Engineering Bachelor’s Thesis 01.06.2017 Abstract Author(s) Sanna Hirvonen Title Rapid detection of Streptococcus agalactiae using Strand In- vasion Based Amplification (SIBA®) Method Number of Pages 41 pages + 1 appendix Date 1. June 2017 Degree Bachelor of Engineering Degree Programme Biotechnology and Food Engineering Specialisation option Kevin Eboigbodin, Senior Development Manager Instructor(s) Kirsi Moilanen, Project Manager Tiina Soininen, Senior Lecturer The aim of this Bachelor’s thesis was to develop a new and rapid method for the detection of Streptococcus agalactiae by using the isothermal SIBA®-method. S. agalactiae, i.e. group B streptococcus (GBS), is the leading cause of severe neonatal infections. In addi- tion, it causes infections for pregnant women, the elderly and people, who have some chronic disease. The experimental part of this thesis was executed at Orion Diagnostica’s Research and Development laboratory. The thesis was started by conducting oligoscreening to find the most suitable primer combinations. Along with the screening, GBS was grown on blood agar plate and LB broth. The genomic DNA was extracted from LB broth and quantified with qPCR. Primer combinations that passed the oligoscreening were tested with the ge- nomic DNA. Suitable assays were optimized, the sensitivity and specificity of the assays were tested, and the best assay was freeze-dried. In addition, the effect of different lytic enzymes to SIBA® reaction and GBS cells was tested. Lastly, the developed SIBA GBS assay was tested with clinical samples by using freeze-dried reagents. -
Pasteurella Multocida Isolated from Cattle
Journal of Applied Pharmaceutical Science Vol. 3 (04), pp. 106-110, April, 2013 Available online at http://www.japsonline.com DOI: 10.7324/JAPS.2013.3419 ISSN 2231-3354 Antibiotic Susceptibility and Molecular Analysis of Bacterial Pathogen Pasteurella Multocida Isolated from Cattle Azmat Jabeen, Mahrukh Khattak, Shahzad Munir*, Qaiser Jamal, Mubashir Hussain Department of Microbiology, Kohat University of Science and Technology, Kohat, Khyber Pakhtunkhwa, Pakistan. ARTICLE INFO ABSTRACT Article history: Pasteurella multocida is a Gram negative, non motile and coccobacillus bacterium. It has 5 strains i.e. A, B, D, Received on: 01/02/2013 E and F and 16 serotypes (1-16). In present study, we analyzed Pasteurella multocida B: 2 strains, responsible Revised on: 19/02/2013 for Hemorrhagic Septicemia (HS) in cattle, on morphological/microbial, biochemical, molecular level and to Accepted on: 15/03/2013 check the antibiotic sensitivity of the Pasteurella multocida. Microbial analysis showed that while grown on Available online: 27/04/2013 Brain Heart Infusion agar plates and Blood Agar Base Medium, grayish lustrous colonies of Pasteurella multocida were observed. Gram staining showed that Pasteurella multocida are gram negative. Microscopic Key words: observations revealed it to be coccobacillus and it was non- motile. Identification was conducted by Pasteurella multocida, conventional biochemical tests and percentage identification of Analytical Profile Index was 96 %. Antibiotic Hemorrhagic Septicemia, sensitivity with different antibiotics was checked by disk diffusion method and was found resistant to Analytical Profile Index, Augmentin, Amoxicillin and Aztreonam and was more susceptible to Ceftiofur. On molecular level its DNA Antibiotic sensitivity. was extracted and was run with marker having range from 0.5 – 10 kb. -
Beta-Haemolytic Streptococci (BHS)
technical sheet Beta-Haemolytic Streptococci (BHS) Classification Transmission Gram-positive cocci, often found in chains Transmission is generally via direct contact with nasopharyngeal secretions from ill or carrier animals. Family Animals may also be infected by exposure to ill or Streptococcaceae carrier caretakers. β-haemolytic streptococci are characterized by Lancefield grouping (a characterization based on Clinical Signs and Lesions carbohydrates in the cell walls). Only some Lancefield In mice and rats, generally none. Occasional groups are of clinical importance in laboratory rodents. outbreaks of disease associated with BHS are Streptococci are generally referred to by their Lancefield reported anecdotally and in the literature. In most grouping but genus and species are occasionally used. cases described, animals became systemically ill after experimental manipulation, and other animals Group A: Streptococcus pyogenes in the colony were found to be asymptomatic Group B: Streptococcus agalactiae carriers. In a case report not involving experimental Group C: Streptococcus equi subsp. zooepidemicus manipulation, DBA/2NTac mice and their hybrids were Group G: Streptococcus canis more susceptible to an ascending pyelonephritis and subsequent systemic disease induced by Group B Affected species streptococci than other strains housed in the same β-haemolytic streptococci are generally considered barrier. opportunists that can colonize most species. Mice and guinea pigs are reported most frequently with clinical In guinea pigs, infection with Group C streptococci signs, although many rodent colonies are colonized leads to swelling and infection of the lymph nodes. with no morbidity, suggesting disease occurs only with Guinea pigs can be inapparent carriers of the organism severe stress or in other exceptional circumstances. -
Pathodxtra Strep Grouping
of extracted streptococci antigens of prepared (as described in test procedure on solid media) representative strains of Lancefield Groups A Colonies On Solid Media: with an uninoculated mixing stick or inoculating loop. The A, B, C, D, F and G. The solution contains 1 Label one 12 × 75 mm test tube for each specimen. latex suspension should not show significant agglutination 0.098% sodium azide as preservative. Store 2 Add 1 free flowing drop of Reagent 1 to each specimen and the result serves as a control for direct comparison of at 2 to 8°C; stable until the expiration date tube by squeezing the bottle gently in a vertical the test performed with bacterial extract. Key Code TSMX7733B position. marked on the label. c) Carry out the complete test procedure on stock cultures www.oxoid.com/ifu 3 Pick 1 to 4 isolated ß-haemolytic colonies with a Reagent 1 (DR0709A) disposable applicator stick or with an inoculating loop of known groups. Europe + 800 135 79 135 US 1 855 236 0910 One bottle containing 4.0 ml of a blue and resuspend them in Reagent 1. (If colonies are 10 RESULTS CA 1 855 805 8539 ROW +31 20 794 7071 coloured sodium nitrite solution with minute sufficient colonies should be resuspended in 0.098% sodium azide as preservative. Store Reagent 1 to ensure it becomes turbid.) Do not use INTERPRETATION upright and tightly capped; stable at 2 to a swab, since it will absorb too much of the liquid 10.1 POSITIVE RESULT: A positive reaction occurs when there volume. -
BD™ Enterococcosel™ Agar
INSTRUCTIONS FOR USE – READY-TO-USE PLATED MEDIA PA-254019.06 Rev.: Mar 2013 BD Enterococcosel Agar INTENDED USE BD Enterococcosel Agar is a selective medium for the isolation and enumeration of fecal streptococci (group D) from clinical specimens. PRINCIPLES AND EXPLANATION OF THE PROCEDURE Microbiological method. This medium is based on the Bile Esculin Agar formulation of Rochaix which was later modified by Isenberg et al. by reducing the bile concentration and by adding sodium azide.1,2 This modification is supplied as BD Enterococcosel Agar. The medium is a standard formulation for the isolation of enterococci.3-5 Two peptones provide nutrients. Group D streptococci (including enterococci) hydrolyze esculin to esculetin and glucose. Esculetin reacts with an iron salt to form a dark brown or black complex. Ferric citrate is included as an indicator and reacts with esculetin to produce a brown to black complex. Oxgall is used to inhibit gram-positive bacteria other than enterococci. Sodium azide is inhibitory to gram-negative micro-organisms.5-7 REAGENTS BD Enterococcosel Agar Formula* Per Liter Purified Water Pancreatic Digest of Casein 17.0 g Peptic Digest of Animal Tissue 3.0 Yeast Extract 5.0 Oxgall 10.0 Sodium Chloride 5.0 Esculin 1.0 Ferric Ammonium Citrate 0.5 Sodium Azide 0.25 Sodium Citrate 1.0 Agar 13.5 pH 7.1+/- 0.2 *Adjusted and/or supplemented as required to meet performance criteria. PRECAUTIONS . For professional use only. Do not use plates if they show evidence of microbial contamination, discoloration, drying, cracking or other signs of deterioration. -
Streptex Rapid Contains Sufficient Material for 50 Tests, See Kit Contents
Latex Suspensions 2. In accordance with the principles of Good Laboratory Practice it is strongly PROCEDURE Five plastic dropper bottles, one specific for each of the recommended that extracts at any stage of testing should be treated as MATERIALS PROVIDED groups A, B, C, F and G, each containing sufficient for 50 potentially infectious and handled with all necessary precautions. Streptex Rapid contains sufficient material for 50 tests, see Kit Contents. tests. The polystyrene latex particles, which are coated 3. Non-disposable apparatus should be sterilised by any appropriate with purified rabbit antibody to the appropriate group procedure after use, although the preferred method is to autoclave for TEST PROCEDURE antigen, are suspended at a concentration of 0.5% in Key Code TSMX7797B 15 minutes at 121°C; disposables should be autoclaved or incinerated. CAUTION: Precautions appropriate to the handling of live cultures should phosphate buffer pH 7.4 containing 0.1% sodium azide. Spillage of potentially infectious materials should be removed be taken while performing the tests. immediately with absorbent paper tissue and the contaminated area www.oxoid.com/ifu The Latex Suspensions are supplied ready for A suggested outline scheme for grouping organisms from primary plates or swabbed with a standard bacterial disinfectant or 70% alcohol. Do NOT Europe + 800 135 79 135 US 1 855 236 0910 use and should be stored upright at 2 to subculture is shown in Figure 3. 8°C where they will retain activity at least until use sodium hypochlorite. Materials used to clean spills, including gloves, For each culture: CA 1 855 805 8539 ROW +31 20 794 7071 the date shown on the bottle labels. -
Physico-Chemical and Bacteriological Quality of Water, And
PHYSICO-CHEMICAL AND BACTERIOLOGICAL QUALITY OF WATER, AND ANTIMICROBIAL SUSCEPTIBILITY OF PATHOGENIC ISOLATES FROM SELECTED WATER SOURCES IN SAMBURU SOUTH. BY JEOPHITA JUNE MWAJUMA (B.Sc, P.G.D.E) REG. NO. I56/7341/02 DEPARTMENT OF PLANT AND MICROBIAL SCIENCES A thesis submitted in partial fulfillment of the requirements for the award of the degree of Master of Science (Microbiology) in the School of Pure and Applied Sciences, Kenyatta University April 2010 ii DECLARATION I, Jeophita June Mwajuma, declare that this thesis is my original work and has not been presented for the award of a degree in any other University or any other award. Signature…………………………………... Date………………………….. We confirm that the work reported in this thesis was carried out by the candidate under our supervision. SUPERVISORS: Prof. Paul Okemo Department of Plant and Microbial Sciences Kenyatta University Signature…………………………………... Date………………………….. Dr. Alexander Njue Department of Plant and Microbial Sciences Kenyatta University Signature…………………………………... Date………………………….. Prof. Kiplagat Kotut Department of Plant and Microbial Sciences Kenyatta University Signature…………………………………... Date………………………….. iii DEDICATION For my girls, Neema and Wema. Babies, the sky is the limit! iv Formatted: Centered, Indent: Left: 0.25", 1. ACKNOWLEDGEMENT No bullets or numbering I wish to thank my supervisors Prof. Paul Okemo, Dr. Alexander Njue and Prof. Kiplagat Kotut for their expert advice and encouragement throughout the period of this study. My gratitude also goes to Earthwatch Institute for funding my research work through the Samburu Communities, Water and Wildlife project. I also wish to thank KEMRI, Welcome Trust Laboratories Kilifi, Wamba Mission Hospital and Mombasa Polytechnic University College for providing me with laboratory space and analytical tools. -
Resistant Gram-Negative Bacteria in Urine of Pregnant Women Attending Antenatal Clinic of Mother and Child Hospital, Ondo, Nigeria
Vol. 15(5), pp. 209-216, May, 2021 DOI: 10.5897/AJMR2021.9491 Article Number: FAE2CD666760 ISSN: 1996-0808 Copyright ©2021 Author(s) retain the copyright of this article African Journal of Microbiology Research http://www.academicjournals.org/AJMR Full Length Research Paper Phenotypic and molecular characterization of multiple- resistant gram-negative bacteria in urine of pregnant women attending antenatal clinic of Mother and Child hospital, Ondo, Nigeria 1 1 2* Eunice Damilola Wilkie , Anthonia Olufunke Oluduro , Thonda Oluwakemi Abike and Chidinma Vivian Chukwudum1 1Department of Microbiology, Faculty of Sciences, Obafemi Awolowo University, Ile-Ife, Osun State, Nigeria. 2Department of Biological Sciences, Faculty of Sciences, Kings University, Odeomu, Osun State, Nigeria. Received 27 January, 2021; Accepted 12 March, 2021 Phenotypic and molecular characterization of multiple antibiotic resistant Gram-negative bacteria in urine samples of pregnant women in Mother and Child Hospital, Nigeria was reported. In the study, 407 apparently healthy pregnant women were recruited. Structured questionnaire was administered to the patients to obtain their socio-demographic information and the medical history. Urine samples were collected, processed and analysed using standard microbiological procedures. Detailed identification of the bacteria isolates was done using biochemical characterization using Bergey’s Manual of Determinative Bacteriology and Analytical Profile Index (API) Kit. The antimicrobial susceptibility testing of the bacteria isolates was carried out using the Kirby-Bauer’s disk diffusion technique. Detection of the beta lactamase resistance genes (bla CTX-M and Tet A) was done by polymerase chain reactions (PCR) with appropriate primers. The following Gram-negative bacteria were recovered comprising Pseudomonas aeruginosa 48 (34.0%), Escherichia coli 30 (21.3%), Klebsiella sp. -
Streptococcosis Humans and Animals
Zoonotic Importance Members of the genus Streptococcus cause mild to severe bacterial illnesses in Streptococcosis humans and animals. These organisms typically colonize one or more species as commensals, and can cause opportunistic infections in those hosts. However, they are not completely host-specific, and some animal-associated streptococci can be found occasionally in humans. Many zoonotic cases are sporadic, but organisms such as S. Last Updated: September 2020 equi subsp. zooepidemicus or a fish-associated strain of S. agalactiae have caused outbreaks, and S. suis, which is normally carried in pigs, has emerged as a significant agent of streptoccoccal meningitis, septicemia, toxic shock-like syndrome and other human illnesses, especially in parts of Asia. Streptococci with human reservoirs, such as S. pyogenes or S. pneumoniae, can likewise be transmitted occasionally to animals. These reverse zoonoses may cause human illness if an infected animal, such as a cow with an udder colonized by S. pyogenes, transmits the organism back to people. Occasionally, their presence in an animal may interfere with control efforts directed at humans. For instance, recurrent streptococcal pharyngitis in one family was cured only when the family dog, which was also colonized asymptomatically with S. pyogenes, was treated concurrently with all family members. Etiology There are several dozen recognized species in the genus Streptococcus, Gram positive cocci in the family Streptococcaceae. Almost all species of mammals and birds, as well as many poikilotherms, carry one or more species as commensals on skin or mucosa. These organisms can act as facultative pathogens, often in the carrier. Nomenclature and identification of streptococci Hemolytic reactions on blood agar and Lancefield groups are useful in distinguishing members of the genus Streptococcus. -
JOURNAL of CLINICAL MICROBIOLOGY VOLUME 20 * DECEMBER 1984 * NUMBER 6 Henry D
JOURNAL OF CLINICAL MICROBIOLOGY VOLUME 20 * DECEMBER 1984 * NUMBER 6 Henry D. Isenberg, Editor in Chief (1989) Herman Friedman, Editor (1985) Peter B. Smith, Editor (1989) Long Island Jewish-Hillside College ofMedicine Centers for Disease Control Medical Center University of South Florida Atlanta, Ga. New Hyde Park, N. Y. Tampa, Fla. Richard C. Tilton, Editor (1989) Steven D. Douglas, Editor (1988) Michael R. McGinnis, Editor (1985) University of Connecticut School of Children's Hospital ofPhiladelphia North Carolina Memorial Hospital Medicine Philadelphia, Pa. Chapel Hill, N.C. Farmington, Conn. Nathalie J. Schmidt, Editor (1985) California Department ofHealth, Berkeley, Calif. EDITORIAL BOARD Libero Ajello (1985) J. J. Farmer (1986) Walter J. Loesche (1985) Joseph D. Schwartzman (1985) William L. Albritton (1984) Mary Jane Ferraro (1984) Victor Lorian (1984) Alexis Shelokov (1985) Stephen D. Allen (1984) Patricia Ferrieri (1986) James D. MacLowry (1986) Maurice C. Shepard (1985) Daniel Amsterdam (1986) Sydney M. Finegold (1985) Laurence R. McCarthy (1986) Patricia L. Shipley (1985) Ann M. Arvin (1984) James Folds (1984) Kenneth McClatchy (1986) David M. Shlaes (1985) Lawrence Ash (1986) Marianne Forsgren (1984) Joseph E. McDade (1985) Marcelino F. Sierra (1984) Arthur L. Barry (1984) Earl H. Freimer (1984) Jerry R. McGhee (1985) Robert M. Smibert II (1984) Barry Beaty (1984) Lynn S. Garcia (1986) Joseph L. Melnick (1985) James W. Smith (1986) John E. Bennett (1985) W. Lance George (1984) Thomas Mitchell (1984) Steven Specter (1986) Merlin S. Bergdoll (1985) Gerald L. Gilardi (1986) Josephine A. Morello (1984) Leslie Spence (1985) Jennifer M. Best (1984) Robert C. Good (1985) Stephen A. Morse (1986) Roy W. -
Streptococci
STREPTOCOCCI Streptococci are Gram-positive, nonmotile, nonsporeforming, catalase-negative cocci that occur in pairs or chains. Older cultures may lose their Gram-positive character. Most streptococci are facultative anaerobes, and some are obligate (strict) anaerobes. Most require enriched media (blood agar). Streptococci are subdivided into groups by antibodies that recognize surface antigens (Fig. 11). These groups may include one or more species. Serologic grouping is based on antigenic differences in cell wall carbohydrates (groups A to V), in cell wall pili-associated protein, and in the polysaccharide capsule in group B streptococci. Rebecca Lancefield developed the serologic classification scheme in 1933. β-hemolytic strains possess group-specific cell wall antigens, most of which are carbohydrates. These antigens can be detected by immunologic assays and have been useful for the rapid identification of some important streptococcal pathogens. The most important groupable streptococci are A, B and D. Among the groupable streptococci, infectious disease (particularly pharyngitis) is caused by group A. Group A streptococci have a hyaluronic acid capsule. Streptococcus pneumoniae (a major cause of human pneumonia) and Streptococcus mutans and other so-called viridans streptococci (among the causes of dental caries) do not possess group antigen. Streptococcus pneumoniae has a polysaccharide capsule that acts as a virulence factor for the organism; more than 90 different serotypes are known, and these types differ in virulence. Fig. 1 Streptococci - clasiffication. Group A streptococci causes: Strep throat - a sore, red throat, sometimes with white spots on the tonsils Scarlet fever - an illness that follows strep throat. It causes a red rash on the body. -
Characterization, Prevalance and Antimicrobial Susceptibility Pattern
International Journal of Clinical Obstetrics and Gynaecology 2018; 2(6): 31-42 ISSN (P): 2522-6614 ISSN (E): 2522-6622 © Gynaecology Journal Characterization, prevalance and antimicrobial www.gynaecologyjournal.com 2018; 2(6): 31-42 susceptibility pattern of bacterial uropathogens isolated Received: 21-09-2018 Accepted: 24-10-2018 from pregnant women at Lahore general hospital, Lahore, Pakistan Rabia Habib Institute of Molecular Biology and Biotechnology, University of Lahore, Pakistan Rabia Habib, Muhammad Danish Mehmood, Sana Noreen, Huma Anwar, Mehreen Gul, Nazia Ayub and Almas Raza Muhammad Danish Mehmood Ottoman Pharma (Immuno Division), Raiwind Road Lahore, Abstract Pakistan Urinary tract infection (UTI) is common in ladies living in developing countries which may progress to complications such as pyelonephritis and preterm delivery during pregnancy. The present study provides an Sana Noreen insight for causative agent of UTI, their prevalence in pregnant ladies and its association with age, Ottoman Pharma (Immuno metabolic disorder and gestational period. Total of 375 midstream samples were collected from pregnant Division), Raiwind Road Lahore, women, pure culture were segregated on selective media and identified through analytical profile index Pakistan (API) to evaluate prevalence of uropathogens in UTI and ASB patients. Isolated uropathogenic E. coli were further characterized by polymerase chain reaction (PCR) using specific primers for genotype cjrA, cjrB, Huma Anwar and cjrC. Among 375 midstream urine samples of pregnant women, 160 cases of UTI and ASB (≥105 Ottoman Pharma (Immuno CFU) were recorded. API analysis of such samples showed 65(40.6%), 55(34.35%) and 40(25%) of E. coli, Division), Raiwind Road Lahore, Pakistan Enterococci and Staphylococci respectively.