Trebouxiophyceae, Chlorophyta)
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Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016 April 1981 Revised, May 1982 2nd revision, April 1983 3rd revision, December 1999 4th revision, May 2011 Prepared for U.S. Department of Commerce Ohio Department of Natural Resources National Oceanic and Atmospheric Administration Division of Wildlife Office of Ocean and Coastal Resource Management 2045 Morse Road, Bldg. G Estuarine Reserves Division Columbus, Ohio 1305 East West Highway 43229-6693 Silver Spring, MD 20910 This management plan has been developed in accordance with NOAA regulations, including all provisions for public involvement. It is consistent with the congressional intent of Section 315 of the Coastal Zone Management Act of 1972, as amended, and the provisions of the Ohio Coastal Management Program. OWC NERR Management Plan, 2011 - 2016 Acknowledgements This management plan was prepared by the staff and Advisory Council of the Old Woman Creek National Estuarine Research Reserve (OWC NERR), in collaboration with the Ohio Department of Natural Resources-Division of Wildlife. Participants in the planning process included: Manager, Frank Lopez; Research Coordinator, Dr. David Klarer; Coastal Training Program Coordinator, Heather Elmer; Education Coordinator, Ann Keefe; Education Specialist Phoebe Van Zoest; and Office Assistant, Gloria Pasterak. Other Reserve staff including Dick Boyer and Marje Bernhardt contributed their expertise to numerous planning meetings. The Reserve is grateful for the input and recommendations provided by members of the Old Woman Creek NERR Advisory Council. The Reserve is appreciative of the review, guidance, and council of Division of Wildlife Executive Administrator Dave Scott and the mapping expertise of Keith Lott and the late Steve Barry. -
A Study on Chlorophyceae of the Artificial Ponds and Lakes of the National Botanical Garden of Iran
A STUDY ON CHLOROPHYCEAE OF THE ARTIFICIAL PONDS AND LAKES OF THE NATIONAL BOTANICAL GARDEN OF IRAN T. Nejadsattari, Z. Shariatmadari and Z. Jamzad Nejadsattari, T., Z. Shariatmadari, and Z. Jamzad,.2006 01 01:.A study on chlorophyceae of the artificial ponds and lakes of National Botanical Garden of Iran . – Iran. Journ. Bot. 11 (2): 159-168. Tehran Five aquatic sites of National Botanical Garden of Iran monthly were sampled from December 2003 through November 2004. 68 genera and species of 10 families and 6 orders of the planktonic Chlorophyceae were identified. Among the families Desmidaceae with 22 genera and species showed the highest species richness. Scenedesmaceae (15 species) and Oocystaceae (14 species), Hydrodictyaceae (7 species), Ulotrichaceae (3 species), Zygnemataceae (2 species), Volvocaceae (2 species) and Cladophoraceae, Oedogoniaceae and Trentephliaceae each with 1 species respectively presented in the studied sites. High population densities of species were observed in the warm months. Taher Nejadsattari, Department of Plant Biology, Faculty of Basic Sciences, Islamic Azad University Science and Research Branch, Tehran. –Ziba Jamzad, Reasearch Institute of Forests and Rangelands, P. O. Box 13185- 116, Tehran, Iran. –Zeinab Shariatmadari, Department of Plant biology, Faculty of Basic Sciences, Islamic Azad University Science and Research Branch, Tehran. Keywords. Chlorophyceae, identification, Botanical garden, Iran. ﻣﻄﺎﻟﻌﻪاي در ﻣﻮرد ﺟﻠﺒﻜﻬﺎي ﺳﺒﺰ درﻳﺎﭼﻪﻫﺎ و ﺑﺮﻛﻪﻫﺎي ﺑﺎغ ﮔﻴﺎﻫﺸﻨﺎﺳﻲ ﻣﻠﻲ اﻳﺮان ﻃﺎﻫﺮ ﻧﮋاد ﺳﺘﺎري، زﻳﻨﺐ ﺷﺮﻳﻌﺘﻤﺪاري و زﻳﺒﺎ ﺟﻢ زاد در ﻃﻲ اﻳﻦ ﺗﺤﻘﻴﻖ ﺟﻠﺒﻜﻬﺎي ﺳﺒﺰ 5 ﺑﺮﻛﻪ ﻣﺼﻨﻮﻋﻲ در ﺑﺎغ ﮔﻴﺎﻫﺸﻨﺎﺳﻲ ﻣﻠﻲ اﻳﺮان ﺑﺎ ﻧﻤﻮﻧﻪﺑﺮداري ﻣﺎﻫﻴﺎﻧﻪ از آذر 1382 ﺗﺎ آﺑﺎن 1383 ﻣﻮرد ﻣﻄﺎﻟﻌﻪ و ﺷﻨﺎﺳﺎﻳﻲ ﻗﺮار ﮔﺮﻓﺘﻨﺪ. 68 ﺟﻨﺲ و ﮔﻮﻧﻪ ﻣﺘﻌﻠﻖ ﺑﻪ 10 ﺗﻴﺮه و 6 راﺳﺘﻪ از ﺟﻠﺒﻜﻬﺎي ﺳﺒﺰ ﺷﻨﺎﺳﺎﻳﻲ ﮔﺮدﻳﺪ. -
Lateral Gene Transfer of Anion-Conducting Channelrhodopsins Between Green Algae and Giant Viruses
bioRxiv preprint doi: https://doi.org/10.1101/2020.04.15.042127; this version posted April 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 5 Lateral gene transfer of anion-conducting channelrhodopsins between green algae and giant viruses Andrey Rozenberg 1,5, Johannes Oppermann 2,5, Jonas Wietek 2,3, Rodrigo Gaston Fernandez Lahore 2, Ruth-Anne Sandaa 4, Gunnar Bratbak 4, Peter Hegemann 2,6, and Oded 10 Béjà 1,6 1Faculty of Biology, Technion - Israel Institute of Technology, Haifa 32000, Israel. 2Institute for Biology, Experimental Biophysics, Humboldt-Universität zu Berlin, Invalidenstraße 42, Berlin 10115, Germany. 3Present address: Department of Neurobiology, Weizmann 15 Institute of Science, Rehovot 7610001, Israel. 4Department of Biological Sciences, University of Bergen, N-5020 Bergen, Norway. 5These authors contributed equally: Andrey Rozenberg, Johannes Oppermann. 6These authors jointly supervised this work: Peter Hegemann, Oded Béjà. e-mail: [email protected] ; [email protected] 20 ABSTRACT Channelrhodopsins (ChRs) are algal light-gated ion channels widely used as optogenetic tools for manipulating neuronal activity 1,2. Four ChR families are currently known. Green algal 3–5 and cryptophyte 6 cation-conducting ChRs (CCRs), cryptophyte anion-conducting ChRs (ACRs) 7, and the MerMAID ChRs 8. Here we 25 report the discovery of a new family of phylogenetically distinct ChRs encoded by marine giant viruses and acquired from their unicellular green algal prasinophyte hosts. -
New Phylogenetic Hypotheses for the Core Chlorophyta Based on Chloroplast Sequence Data
ORIGINAL RESEARCH ARTICLE published: 17 October 2014 ECOLOGY AND EVOLUTION doi: 10.3389/fevo.2014.00063 New phylogenetic hypotheses for the core Chlorophyta based on chloroplast sequence data Karolina Fucíkovᡠ1, Frederik Leliaert 2,3, Endymion D. Cooper 4, Pavel Škaloud 5, Sofie D’Hondt 2, Olivier De Clerck 2, Carlos F. D. Gurgel 6, Louise A. Lewis 1, Paul O. Lewis 1, Juan M. Lopez-Bautista 3, Charles F. Delwiche 4 and Heroen Verbruggen 7* 1 Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, USA 2 Phycology Research Group, Biology Department, Ghent University, Ghent, Belgium 3 Department of Biological Sciences, The University of Alabama, Tuscaloosa, AL, USA 4 Department of Cell Biology and Molecular Genetics and the Maryland Agricultural Experiment Station, University of Maryland, College Park, MD, USA 5 Department of Botany, Faculty of Science, Charles University in Prague, Prague, Czech Republic 6 School of Earth and Environmental Sciences, The University of Adelaide, Adelaide, SA, Australia 7 School of Botany, University of Melbourne, Melbourne, VIC, Australia Edited by: Phylogenetic relationships in the green algal phylum Chlorophyta have long been subject to Debashish Bhattacharya, Rutgers, debate, especially at higher taxonomic ranks (order, class). The relationships among three The State University of New Jersey, traditionally defined and well-studied classes, Chlorophyceae, Trebouxiophyceae, and USA Ulvophyceae are of particular interest, as these groups are species-rich and ecologically Reviewed by: Jinling Huang, East Carolina important worldwide. Different phylogenetic hypotheses have been proposed over the University, USA past two decades and the monophyly of the individual classes has been disputed on Cheong Xin Chan, The University of occasion. -
Neoproterozoic Origin and Multiple Transitions to Macroscopic Growth in Green Seaweeds
bioRxiv preprint doi: https://doi.org/10.1101/668475; this version posted June 12, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds Andrea Del Cortonaa,b,c,d,1, Christopher J. Jacksone, François Bucchinib,c, Michiel Van Belb,c, Sofie D’hondta, Pavel Škaloudf, Charles F. Delwicheg, Andrew H. Knollh, John A. Raveni,j,k, Heroen Verbruggene, Klaas Vandepoeleb,c,d,1,2, Olivier De Clercka,1,2 Frederik Leliaerta,l,1,2 aDepartment of Biology, Phycology Research Group, Ghent University, Krijgslaan 281, 9000 Ghent, Belgium bDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052 Zwijnaarde, Belgium cVIB Center for Plant Systems Biology, Technologiepark 71, 9052 Zwijnaarde, Belgium dBioinformatics Institute Ghent, Ghent University, Technologiepark 71, 9052 Zwijnaarde, Belgium eSchool of Biosciences, University of Melbourne, Melbourne, Victoria, Australia fDepartment of Botany, Faculty of Science, Charles University, Benátská 2, CZ-12800 Prague 2, Czech Republic gDepartment of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742, USA hDepartment of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, 02138, USA. iDivision of Plant Sciences, University of Dundee at the James Hutton Institute, Dundee, DD2 5DA, UK jSchool of Biological Sciences, University of Western Australia (M048), 35 Stirling Highway, WA 6009, Australia kClimate Change Cluster, University of Technology, Ultimo, NSW 2006, Australia lMeise Botanic Garden, Nieuwelaan 38, 1860 Meise, Belgium 1To whom correspondence may be addressed. Email [email protected], [email protected], [email protected] or [email protected]. -
Phylogenetic Position of Ecballocystis and Ecballocystopsis (Chlorophyta)
Fottea, Olomouc, 13(1): 65–75, 2013 65 Phylogenetic position of Ecballocystis and Ecballocystopsis (Chlorophyta) Shuang XIA1, 2, Huan ZHU1, 2 Ying–Yin CHENG1, Guo–Xiang LIU1* & Zheng–Yu HU1 1Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, P. R. China; *Corresponding author e–mail: [email protected] 2University of Chinese Academy of Sciences, Beijing 100039, P. R. China Abstract: Ecballocystis and Ecballocystopsis are two rare, green algal genera. Both have thalli that grow on rock surfaces in flowing water and attach to rocks by a thick mucilaginous pad. The algae have similar thalli structure, consisting of autospores in mother cell wall remnants. Ecballocystopsis differs from Ecballocystis in being filamentous instead of dendroid. In this study, new strains of Ecballocystis hubeiensis and Ecballocystopsis dichotomus were collected from China and cultured. Morphology was observed by light and electron microscopy. 18S rDNA and rbcL sequences were determined and subjected to phylogenetic analysis. Both morphological and phylogenetic analysis indicated that Ecballocystis and Ecballocystopsis should be placed in the family of Oocystaceae. Ecballocystis was closely related to Elongatocystis in 18S rDNA phylogeny. The results of present study emphasize the high level of phenotypic plasticity of Oocystaceae. Within the family, cell arrangement can be solitary, colonial, dendroid, or filamentous. Key words: Ecballocystis, Ecballocystopsis, phylogeny, 18S rDNA, rbcL, Oocystaceae Introduction the species from other members of Ecballocystis (LIU & HU 2005). Ecballocystis BOHLIN and Ecballocystopsis The genus Ecballocystopsis was esta- IYENGAR are two rare green algal genera. Both blished by IYENGAR (1933) with the type species algae grow on the wet surfaces of substrata. -
Issn 2347-6893
ISSN 2347-6893 A comparison and phylogenetic analysis of the pyrenoid ultrastructure of three Oocystis species (Oocystaceae, Trebouxiophyceae, Chlorophyta) Feng Li, Xianghu Huang* and Changling Li Fisheries College of Guangdong Ocean University, Zhanjiang 524088, P. R. China [email protected] *Corresponding author e-mail: [email protected] [email protected] ABSTRACT The 18S rRNA gene sequences of three Oocystis species were determined and subjected to two different phylogenetic analysis algorithms. Phylogenetic analysis indicated that they all belong to Oocystaceae. However, the three strains were not members of a monophyletic cluster. New evidence that the genus Oocystis is paraphyletic is provided in this work. The pyrenoid ultrastructure of the three strains was studied using transmission electron microscopy (TEM). Different morphologies of pyrenoids can be distinguished as three types. Oocystis sp. had one pyrenoid surrounded by a sheath of starch consisting of four to six starch plates. The pyrenoid matrix was traversed by several tubular thylakoids. O. nephrocytioides contained two pyrenoids, with each pyrenoid being homogenous and surrounded by a thick, ring-like starch sheath. The thylakoids extend the length of the chloroplast but never traverse the pyrenoid matrix. No starch sheath pyrenoid has been found in Oocystis sp. FACHB 1429, which was traversed by two tubular thylakoids. These results suggest that different morphological features of the pyrenoids, including their associated starch sheath, are species- specific. Keywords Oocystis, Oocystis nephrocytioides, Oocystaceae, 18S rRNA, phylogeny, ultrastructure, pyrenoids, TEM, taxonomy Academic Discipline Microbiology SUBJECT CLASSIFICATION QR Council for Innovative Research Peer Review Research Publishing System Journal : Journal of Advances in Biology Vol. 6, No. -
Mayuko Hamada 1, 3*, Katja
1 Title: 2 Metabolic co-dependence drives the evolutionarily ancient Hydra-Chlorella symbiosis 3 4 Authors: 5 Mayuko Hamada 1, 3*, Katja Schröder 2*, Jay Bathia 2, Ulrich Kürn 2, Sebastian Fraune 2, Mariia 6 Khalturina 1, Konstantin Khalturin 1, Chuya Shinzato 1, 4, Nori Satoh 1, Thomas C.G. Bosch 2 7 8 Affiliations: 9 1 Marine Genomics Unit, Okinawa Institute of Science and Technology Graduate University 10 (OIST), 1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, 904-0495 Japan 11 2 Zoological Institute and Interdisciplinary Research Center Kiel Life Science, Kiel University, 12 Am Botanischen Garten 1-9, 24118 Kiel, Germany 13 3 Ushimado Marine Institute, Okayama University, 130-17 Kashino, Ushimado, Setouchi, 14 Okayama, 701-4303 Japan 15 4 Atmosphere and Ocean Research Institute, The University of Tokyo, Chiba, 277-8564, 16 Japan 17 18 * Authors contributed equally 19 20 Corresponding author: 21 Thomas C. G. Bosch 22 Zoological Institute, Kiel University 23 Am Botanischen Garten 1-9 24 24118 Kiel 25 TEL: +49 431 880 4172 26 [email protected] 1 27 Abstract (148 words) 28 29 Many multicellular organisms rely on symbiotic associations for support of metabolic activity, 30 protection, or energy. Understanding the mechanisms involved in controlling such interactions 31 remains a major challenge. In an unbiased approach we identified key players that control the 32 symbiosis between Hydra viridissima and its photosynthetic symbiont Chlorella sp. A99. We 33 discovered significant up-regulation of Hydra genes encoding a phosphate transporter and 34 glutamine synthetase suggesting regulated nutrition supply between host and symbionts. -
Lake Spokane Dissolved Oxygen Water Quality Attainment Plan Five Year Report
AVISTA CORPORATION LAKE SPOKANE DISSOLVED OXYGEN WATER QUALITY ATTAINMENT PLAN FIVE YEAR REPORT WASHINGTON 401 CERTIFICATION FERC LICENSE APPENDIX B, SECTION 5.6 SPOKANE RIVER HYDROELECTRIC PROJECT FERC PROJECT NO. 2545 Prepared By: March 24, 2017 [Page intentionally left blank] TABLE OF CONTENTS 1.0 INTRODUCTION ........................................................................................................ 1 2.0 BASELINE MONITORING ........................................................................................ 3 2.1 2016 Monitoring Results .............................................................................................. 3 2.2 Assessment of Lake Spokane Water Quality (2010 – 2016) ........................................ 7 2.3 Monitoring Recommendations ..................................................................................... 8 3.0 IMPLEMENTATION ACTIVITIES ........................................................................... 9 3.1 Studies .......................................................................................................................... 9 3.1.1 Carp Population Reduction Program ...................................................................... 10 3.1.2 Aquatic Weed Management .................................................................................... 10 3.2 2016 Implementation Measures .................................................................................. 11 3.2.1 Carp ........................................................................................................................ -
Compartmentalization of Mrnas in the Giant, Unicellular Green Algae
bioRxiv preprint doi: https://doi.org/10.1101/2020.09.18.303206; this version posted September 18, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Compartmentalization of mRNAs in the giant, 2 unicellular green algae Acetabularia acetabulum 3 4 Authors 5 Ina J. Andresen1, Russell J. S. Orr2, Kamran Shalchian-Tabrizi3, Jon Bråte1* 6 7 Address 8 1: Section for Genetics and Evolutionary Biology, Department of Biosciences, University of 9 Oslo, Kristine Bonnevies Hus, Blindernveien 31, 0316 Oslo, Norway. 10 2: Natural History Museum, University of Oslo, Oslo, Norway 11 3: Centre for Epigenetics, Development and Evolution, Department of Biosciences, University 12 of Oslo, Kristine Bonnevies Hus, Blindernveien 31, 0316 Oslo, Norway. 13 14 *Corresponding author 15 Jon Bråte, [email protected] 16 17 Keywords 18 Acetabularia acetabulum, Dasycladales, UMI, STL, compartmentalization, single-cell, mRNA. 19 20 Abstract 21 Acetabularia acetabulum is a single-celled green alga previously used as a model species for 22 studying the role of the nucleus in cell development and morphogenesis. The highly elongated 23 cell, which stretches several centimeters, harbors a single nucleus located in the basal end. 24 Although A. acetabulum historically has been an important model in cell biology, almost 25 nothing is known about its gene content, or how gene products are distributed in the cell. To 26 study the composition and distribution of mRNAs in A. -
Morphology, Composition, Production, Processing and Applications Of
Morphology, composition, production, processing and applications of Chlorella vulgaris: A review Carl Safi, Bachar Zebib, Othmane Merah, Pierre-Yves Pontalier, Carlos Vaca-Garcia To cite this version: Carl Safi, Bachar Zebib, Othmane Merah, Pierre-Yves Pontalier, Carlos Vaca-Garcia. Morphology, composition, production, processing and applications of Chlorella vulgaris: A review. Renewable and Sustainable Energy Reviews, Elsevier, 2014, 35, pp.265-278. 10.1016/j.rser.2014.04.007. hal- 02064882 HAL Id: hal-02064882 https://hal.archives-ouvertes.fr/hal-02064882 Submitted on 12 Mar 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. OATAO is an open access repository that collects the work of Toulouse researchers and makes it freely available over the web where possible This is an author’s version published in: http://oatao.univ-toulouse.fr/23269 Official URL: https://doi.org/10.1016/j.rser.2014.04.007 To cite this version: Safi, Carl and Zebib, Bachar and Merah, Othmane and Pontalier, Pierre- Yves and Vaca-Garcia, Carlos Morphology, composition, production, -
Freshwater Algae in Britain and Ireland - Bibliography
Freshwater algae in Britain and Ireland - Bibliography Floras, monographs, articles with records and environmental information, together with papers dealing with taxonomic/nomenclatural changes since 2003 (previous update of ‘Coded List’) as well as those helpful for identification purposes. Theses are listed only where available online and include unpublished information. Useful websites are listed at the end of the bibliography. Further links to relevant information (catalogues, websites, photocatalogues) can be found on the site managed by the British Phycological Society (http://www.brphycsoc.org/links.lasso). Abbas A, Godward MBE (1964) Cytology in relation to taxonomy in Chaetophorales. Journal of the Linnean Society, Botany 58: 499–597. Abbott J, Emsley F, Hick T, Stubbins J, Turner WB, West W (1886) Contributions to a fauna and flora of West Yorkshire: algae (exclusive of Diatomaceae). Transactions of the Leeds Naturalists' Club and Scientific Association 1: 69–78, pl.1. Acton E (1909) Coccomyxa subellipsoidea, a new member of the Palmellaceae. Annals of Botany 23: 537–573. Acton E (1916a) On the structure and origin of Cladophora-balls. New Phytologist 15: 1–10. Acton E (1916b) On a new penetrating alga. New Phytologist 15: 97–102. Acton E (1916c) Studies on the nuclear division in desmids. 1. Hyalotheca dissiliens (Smith) Bréb. Annals of Botany 30: 379–382. Adams J (1908) A synopsis of Irish algae, freshwater and marine. Proceedings of the Royal Irish Academy 27B: 11–60. Ahmadjian V (1967) A guide to the algae occurring as lichen symbionts: isolation, culture, cultural physiology and identification. Phycologia 6: 127–166 Allanson BR (1973) The fine structure of the periphyton of Chara sp.