Oxidation of Disulfides to Thiolsulfinates with Hydrogen Peroxide and a Cyclic Seleninate Ester Catalyst
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Pathways for Sensing and Responding to Hydrogen Peroxide at the Endoplasmic Reticulum
cells Review Pathways for Sensing and Responding to Hydrogen Peroxide at the Endoplasmic Reticulum Jennifer M. Roscoe and Carolyn S. Sevier * Department of Molecular Medicine, Cornell University, Ithaca, NY 14853, USA; [email protected] * Correspondence: [email protected]; Tel.: +1-607-253-3657 Received: 14 September 2020; Accepted: 15 October 2020; Published: 18 October 2020 Abstract: The endoplasmic reticulum (ER) has emerged as a source of hydrogen peroxide (H2O2) and a hub for peroxide-based signaling events. Here we outline cellular sources of ER-localized peroxide, including sources within and near the ER. Focusing on three ER-localized proteins—the molecular chaperone BiP, the transmembrane stress-sensor IRE1, and the calcium pump SERCA2—we discuss how post-translational modification of protein cysteines by H2O2 can alter ER activities. We review how changed activities for these three proteins upon oxidation can modulate signaling events, and also how cysteine oxidation can serve to limit the cellular damage that is most often associated with elevated peroxide levels. Keywords: endoplasmic reticulum (ER); hydrogen peroxide; reactive oxygen species (ROS); redox signaling; cysteine oxidation; BiP; IRE1; SERCA2; unfolded protein response (UPR) 1. Introduction All cells are susceptible to oxidative damage. Damage often appears concomitant with a buildup of reactive oxidants and/or a loss of antioxidant systems. In particular, an accumulation of cellular reactive oxygen species (ROS) has attracted much attention as a source of cellular damage and a cause for a loss of cellular function [1]. In keeping with these observations, most historical discussions of ROS focus on the need to defend against the toxic and unavoidable consequences of cellular ROS production, in order to limit cellular dysfunction and disease. -
Sodium Borohydride (Nabh4) Itself Is a Relatively Mild Reducing Agent
1770 Vol. 35 (1987) Chem. Pharm. Bull. _35( 5 )1770-1776(1987). Reactions of Sodium Borohydride. IV.1) Reduction of Aromatic Sulfonyl Chlorides with Sodium Borohydride ATSUKO NOSE and TADAHIRO KUDO* Daiichi College of Pharmaceutical Sciences, 22-1 Tamagawa-cho, Minami-ku, Fukuoka 815, Japan (Received September 12, 1986) Aromatic sulfonyl chlorides were reduced with sodium borohydride in tetrahydrofuran at 0•Ž to the corresponding sulfinic acids in good yields. Further reduction proceeded when the reaction was carried out under reflux in tetrahydrofuran to give disulfide and thiophenol derivatives via sulfinic acid. Furthermore, sulfonamides were reduced with sodium borohydride by heating directly to give sulfide, disulfide and thiophenol derivatives, and diphenyl sulfone was reduced under similar conditions to give thiophenol and biphenyl. Keywords reduction; sodium borohydride; aromatic sulfonyl chloride; sulfonamide; sulfone; aromatic sulfinic acid; disulfide; sulfide; thiophenol Sodium borohydride (NaBH4) itself is a relatively mild reducing agent which is extensively used for the selective reduction of the carbonyl group of ketone, aldehyde and (carboxylic) acid halide derivatives. In the previous papers, we reported that NaBI-14 can reduce some functional groups, such as carboxylic anhydrides,2) carboxylic acids3) and nitro compounds.1) As a continuation of these studies, in the present paper, we wish to report the reduction of aromatic sulfonyl chlorides, sulfinic acids and sulfonamides with NaBH4. Many methods have been reported for the reduction of sulfonyl chlorides to sulfinic acids, such as the use of sodium sulfite,4a-d) zinc,5) electrolytic reduction,6) catalytic reduction,7) magnesium,8) sodium amalgam,9) sodium hydrogen sulfite,10) stannous chlo- TABLE I. -
8.6 Acidity of Alcohols and Thiols 355
08_BRCLoudon_pgs5-1.qxd 12/8/08 11:05 AM Page 355 8.6 ACIDITY OF ALCOHOLS AND THIOLS 355 ural barrier to the passage of ions. However, the hydrocarbon surface of nonactin allows it to enter readily into, and pass through, membranes. Because nonactin binds and thus transports ions, the ion balance crucial to proper cell function is upset, and the cell dies. Ion Channels Ion channels, or “ion gates,” provide passageways for ions into and out of cells. (Recall that ions are not soluble in membrane phospholipids.) The flow of ions is essen- tial for the transmission of nerve impulses and for other biological processes. A typical chan- nel is a large protein molecule imbedded in a cell membrane. Through various mechanisms, ion channels can be opened or closed to regulate the concentration of ions in the interior of the cell. Ions do not diffuse passively through an open channel; rather, an open channel contains regions that bind a specific ion. Such an ion is bound specifically within the channel at one side of the membrane and is somehow expelled from the channel on the other side. Remark- ably, the structures of the ion-binding regions of these channels have much in common with the structures of ionophores such as nonactin. The first X-ray crystal structure of a potassium- ion channel was determined in 1998 by a team of scientists at Rockefeller University led by Prof. Roderick MacKinnon (b. 1956), who shared the 2003 Nobel Prize in Chemistry for this work. The interior of the channel contains binding sites for two potassium ions; these sites are oxygen-rich, much like the interior of nonactin. -
N* Interactions Modulate the Properties of Cysteine Residues
n →π* Interactions Modulate the Properties of Cysteine Residues and Disulfide Bonds in Proteins The MIT Faculty has made this article openly available. Please share how this access benefits you. Your story matters. Citation Kilgore, Henry R. and Ronald T. Raines. “n →π* Interactions Modulate the Properties of Cysteine Residues and Disulfide Bonds in Proteins.” Journal of the American Chemical Society 140 (2018): 17606-17611 © 2018 The Author(s) As Published https://dx.doi.org/10.1021/JACS.8B09701 Publisher American Chemical Society (ACS) Version Author's final manuscript Citable link https://hdl.handle.net/1721.1/125597 Terms of Use Article is made available in accordance with the publisher's policy and may be subject to US copyright law. Please refer to the publisher's site for terms of use. HHS Public Access Author manuscript Author ManuscriptAuthor Manuscript Author J Am Chem Manuscript Author Soc. Author Manuscript Author manuscript; available in PMC 2019 May 21. Published in final edited form as: J Am Chem Soc. 2018 December 19; 140(50): 17606–17611. doi:10.1021/jacs.8b09701. n➝π* Interactions Modulate the Properties of Cysteine Residues and Disulfide Bonds in Proteins Henry R. Kilgore and Ronald T. Raines* Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States Abstract Noncovalent interactions are ubiquitous in biology, taking on roles that include stabilizing the conformation of and assembling biomolecules, and providing an optimal environment for enzymatic catalysis. Here, we describe a noncovalent interaction that engages the sulfur atoms of cysteine residues and disulfide bonds in proteins—their donation of electron density into an antibonding orbital of proximal amide carbonyl groups. -
Validation of a Methodology to Determine Benzene, Toluene
M. L. Gallego-Diez et al.; Revista Facultad de Ingeniería, No. 79, pp. 138-149, 2016 Revista Facultad de Ingeniería, Universidad de Antioquia, No. 79, pp. 138-149, 2016 Validation of a methodology to determine Benzene, Toluene, Ethylbenzene, and Xylenes concentration present in the air and adsorbed in activated charcoal passive samplers by GC/ FID chromatography Validación de una metodología para la determinación de la concentración de Benceno, Tolueno, Etilbenceno y Xilenos, presentes en muestras aire y adsorbidos en captadores pasivos de carbón activado, mediante cromatografía GC/FID Mary Luz Gallego-Díez1*, Mauricio Andrés Correa-Ochoa2, Julio César Saldarriaga-Molina2 1Facultad de Ingeniería, Universidad de Antioquia. Calle 67 # 53- 108. A. A. 1226. Medellín, Colombia. 2Grupo de Ingeniería y Gestión Ambiental (GIGA), Facultad de Ingeniería, Universidad de Antioquia. Calle 67 # 53- 108. A. A. 1226. Medellín, Colombia. ARTICLE INFO ABSTRACT: This article shows the validation of the analytical procedure which allows Received August 28, 2015 determining concentrations of Benzene (B), Toluene (T), Ethylbenzene (E), and Xylenes (X) Accepted April 02, 2016 -compounds known as BTEX- present in the air and adsorbed by over activated charcoal by GC-FID using the (Fluorobenzene) internal standard addition as quantification method. In the process, reference activated charcoal was employed for validation and coconut -base granular charcoal (CGC) for the construction of passive captors used in sample taken in external places or in environmental air. CGC material was selected from its recovering capacity of BTEX, with an average of 89.1% for all analytes. In this research, BTEX presence KEYWORDS in air samples, taken in a road of six lines and characterized for having heavy traffic, in Validation, activated Medellín city (Antioquia, Colombia), was analyzed. -
THIOL OXIDATION a Slippery Slope the Oxidation of Thiols — Molecules RSH Oxidation May Proceed Too Predominates
RESEARCH HIGHLIGHTS Nature Reviews Chemistry | Published online 25 Jan 2017; doi:10.1038/s41570-016-0013 THIOL OXIDATION A slippery slope The oxidation of thiols — molecules RSH oxidation may proceed too predominates. Here, the maximum of the form RSH — can afford quickly for intermediates like RSOH rate constants indicate the order − − − These are many products. From least to most to be spotted and may also afford of reactivity: RSO > RS >> RSO2 . common oxidized, these include disulfides intractable mixtures. Addressing When the reactions are carried out (RSSR), as well as sulfenic (RSOH), the first problem, Chauvin and Pratt in methanol-d , the obtained kinetic reactions, 1 sulfinic (RSO2H) and sulfonic slowed the reactions down by using isotope effect values (kH/kD) are all but have (RSO3H) acids. Such chemistry “very sterically bulky thiols, whose in the range 1.1–1.2, indicating that historically is pervasive in nature, in which corresponding sulfenic acids were no acidic proton is transferred in the been very disulfide bonds between cysteine known to be isolable but were yet rate-determining step. Rather, the residues stabilize protein structures, to be thoroughly explored in terms oxidations involve a specific base- difficult to and where thiols and thiolates often of reactivity”. The second problem catalysed mechanism wherein an study undergo oxidation by H2O2 or O2 in was tackled by modifying the model acid–base equilibrium precedes the order to protect important biological system, 9-mercaptotriptycene, by rate-determining nucleophilic attack − − − structures from damage. Among including a fluorine substituent to of RS , RSO or RSO2 on H2O2. the oxidation products, sulfenic serve as a spectroscopic handle. -
Thiolated Polymers: Stability of Thiol Moieties Under Different Storage Conditions
Scientia Pharmaceutica (Sci. Pharm.) 70, 331-339 (2002) 0 Osterreichische Apotheker-Verlagsgesellschaftm.b.H., Wien, Printed in Austria Thiolated polymers: Stability of thiol moieties under different storage conditions A. ~ernko~-schnijrchi*,M.D. ~ornof'*,C.E. ~ast'and N. ~angoth' 'institute of Pharmaceutical Technology and Biopharmaceutics, Center of Pharmacy, University of Vienna, Althanstr. 14, 1090 Vienna, Austria 2~romaPharma GmbH, lndustriezeile 6, 2100 Leobendorf, Austria Abstract: The purpose of this study was to evaluate the stability of thiolated polymers - so-called thiomers. A polycarbophil-cysteine conjugate and a chitosan-thioglycolic acid conjugate were chosen as representative anionic and cationic thiomer. The thiol group bearing compounds L-cysteine and thioglycolic acid were introduced to polycarbophil and chitosan, respectively with a coupling reaction mediated by a carbodiimide. The resulting thiolated polymers were freeze-dried and the amount of thiol groups on the thiomer was determined spectrophotometrically. Each kind of polymer was directly used or compressed into 1 mg matrix-tablets. Polymers were stored for a period of six months at four different storage conditions, namely at -20°C (56% relative humidity; RH), 4°C (53% RH), at 20°C (70% RH), and at 22°C (25% RH). Samples were taken after 6 months to determine the formation of disulfide bonds and the remaining thiol groups on the polymer. When the polycarbophil-cysteine and chitosan-thioglycolic acid conjugate were stored as powder a decrease of free thiol groups was observed only after storage at 20°C and 70% RH. Both polymers were found to be stable under all storage conditions when compressed into matrix tablets. -
In This Handout, All of Our Functional Groups Are Presented As Condensed Line Formulas, 2D and 3D Formulas and with Nomenclature Prefixes and Suffixes (If Present)
In this handout, all of our functional groups are presented as condensed line formulas, 2D and 3D formulas and with nomenclature prefixes and suffixes (if present). Organic names are built on a foundation of alkanes, alkenes and alkynes. Those examples are presented first and you need to know those rules. The strategies can be found in Chapter 4 of our textbook (alkanes: pages 93-98, cycloalkanes 102-104, alkenes: pages 104-110, alkynes: pages 112-113 and combinations of all of them 113-115). After introducing examples of alkanes, alkenes, alkynes and combinations of them, the functional groups are presented in order of priority. A few nomenclature examples are provided for each of the functional groups. Examples of the various functional groups are presented on pages 115-135 in the textbook. Two overview pages are on pages 136-137. Some functional groups have a suffix name when they are the highest priority functional group and a prefix name when they are not the highest priority group, and these are added to the skeletal names with identifying numbers and stereochemistry terms (E and Z for alkenes, R and S for chiral centers and cis and trans for rings). Several low priority functional groups only have a prefix name. A few additional special patterns are shown on pages 98-102. The only way to learn this topic is practice (over and over). The best practice approach is to actually write out the names (on an extra piece of paper or on a white board, and then do it again). The same functional groups are used throughout the entire course. -
Naming Ethers and Thiols (Naming and Properties)
Ethers • Contain an ─O─ between two carbon groups. • That are simple are named by listing the alkyl names in alphabetical order followed by ether Cyclic ethers (heterocyclic compounds) are often given common names. DO NOT memorize! IUPAC Names for Ethers The shorter alkyl group and the oxygen are named as an alkoxy group attached to the longer hydrocarbon. methoxy propane CH3—O—CH2—CH2—CH3 1 2 3 Numbering the longer alkane gives: 1-methoxypropane Treat all R-O- groups that you find in a molecule as alkoxy groups or branches (substituents), and follow the previous rules we’ve covered for all other families. Properties of Ethers • Slightly polar. • Cannot be H-bond donors. • Are H-bond acceptors (soluble in water up to 4 C’s). • Simple ethers are highly flammable (many form explosive peroxides). Anesthetics • Inhibit pain signals to the brain. • Such as ethyl ether CH3─CH2─O─CH2─CH3 were used for over a century, but caused nausea and were flammable. • Developed by 1960s were nonflammable. Cl F F Cl F H │ │ │ │ │ │ H─C─C─O─C─H H─C─C─O─C─H │ │ │ │ │ │ F F F H F H Ethane(enflurane) Penthrane Methyl tert-butyl ether (MTBE) • Is one of the most produced organic chemicals. • Is a fuel additive used to improve gasoline combustion. • Use is questioned since the discovery that MTBE has contaminated water supplies. Reyes Free to copy for educational purposes Thiols Thiols or mercaptans, are sulfur analogs of alcohols. (The –SH group is called the mercapto, or sulfhydryl group.) The IUPAC nomenclature system adds the ending –thiol to the name of the alkane, but without dropping the final –e. -
Peroxynitrite Oxidation of Aromatic Thiols: Characterization of the Products Formed Through Oxidation of Thionitrobenzoic Acid and Thionitropyridine by Peroxynitrite
W&M ScholarWorks Dissertations, Theses, and Masters Projects Theses, Dissertations, & Master Projects 2006 Peroxynitrite Oxidation of Aromatic Thiols: Characterization of the Products Formed through Oxidation of Thionitrobenzoic Acid and Thionitropyridine by Peroxynitrite Catherine Balchunas Mall College of William & Mary - Arts & Sciences Follow this and additional works at: https://scholarworks.wm.edu/etd Part of the Organic Chemistry Commons Recommended Citation Mall, Catherine Balchunas, "Peroxynitrite Oxidation of Aromatic Thiols: Characterization of the Products Formed through Oxidation of Thionitrobenzoic Acid and Thionitropyridine by Peroxynitrite" (2006). Dissertations, Theses, and Masters Projects. Paper 1539626852. https://dx.doi.org/doi:10.21220/s2-td8x-bb97 This Thesis is brought to you for free and open access by the Theses, Dissertations, & Master Projects at W&M ScholarWorks. It has been accepted for inclusion in Dissertations, Theses, and Masters Projects by an authorized administrator of W&M ScholarWorks. For more information, please contact [email protected]. PEROXYNITRITE OXIDATION OF AROMATIC THIOLS Characterization of the Products Formed Through Oxidation of Thionitrobenzoic Acid and Thionitropyridine by Peroxynitrite A Thesis Presented to The Faculty of the Department of Chemistry The College of William and Mary in Virginia In Partial Fulfillment Of the Requirements for the Degree of Master of Science by Catherine Balchunas Mall 2006 APPROVAL SHEET This thesis is submitted in partial fulfillment of the requirements for the degree of Master of Science t * fVkxXA Catherine Balchunas Mall Approved by the Committee, April 2006 Dr. Lisa M. Landino, Advisor and Chair Dr. Dr. Gaw W. Rice 11 DEDICATION This thesis is dedicated to my husband, Matthew Mall, for being the guy I always dreamed I would someday marry. -
UNDERSTANDING SULFUR BASED REDOX BIOLOGY THROUGH ADVANCEMENTS in CHEMICAL BIOLOGY by THOMAS POOLE a Dissertation Submitted to T
UNDERSTANDING SULFUR BASED REDOX BIOLOGY THROUGH ADVANCEMENTS IN CHEMICAL BIOLOGY BY THOMAS POOLE A Dissertation Submitted to the Graduate Faculty of WAKE FOREST UNIVERSITY GRADUATE SCHOOL OF ARTS AND SCIENCES in Partial Fulfillment of the Requirements for the Degree of DOCTOR OF PHILOSOPHY Chemistry May 2017 Winston-Salem, North Carolina Approved By: S. Bruce King, Ph.D., Advisor Leslie B. Poole, Ph.D., Chair Patricia C. Dos Santos, Ph.D. Paul B. Jones, Ph.D. Mark E. Welker, Ph.D. ACKNOWLEDGEMENTS First and foremost I would like to thank professor S. Bruce King. His approach to science makes him an excellent role model that I strive to emulate. He is uniquely masterful at parsing science into important pieces and identifying the gaps and opportunities that others have missed. I thank him for the continued patience and invaluable insight as I’ve progressed through my graduate studies. This work would not have been possible without his insight and guiding suggestions. I would like to thank our collaborators who have proven invaluable in their support. Cristina Furdui has provided the knowledge, context, and biochemical support that allowed our work to be published in esteemed journals. Leslie Poole has provided the insight into redox biology and guidance towards appropriate experiments. I thank my committee members, Mark Welker and Patricia Dos Santos who have guided my graduate work from the beginning. Professor Dos Santos provided the biological perspective to evaluate my redox biology work. In addition, she helped guide the biochemical understanding required to legitimize my independent proposal. Professor Welker provided the scrutinizing eye for my early computational work and suggested validating the computational work with experimental data. -
Chapter 4 Antimicrobial Properties of Organosulfur Compounds
Chapter 4 Antimicrobial Properties of Organosulfur Compounds Osman Sagdic and Fatih Tornuk Abstract Organosulfur compounds are defi ned as organic molecules containing one or more carbon-sulfur bonds. These compounds are present particularly in Allium and Brassica vegetables and are converted to a variety of other sulfur con- taining compounds via hydrolysis by several herbal enzymes when the intact bulbs are damaged or cut. Sulfur containing hydrolysis products constitute very diverse chemical structures and exhibit several bioactive properties as well as antimicrobial. The antimicrobial activity of organosulfur compounds has been reported against a wide spectrum of bacteria, fungi and viruses. Despite the wide antimicrobial spec- trum, their pungent fl avor/odor is the most considerable factor restricting their com- mon use in foods as antimicrobial additives. However, meat products might be considered as the most suitable food materials in this respect since Allium and Brassica vegetables especially garlic and onion have been used as fl avoring and preservative agents in meat origin foods. In this chapter, the chemical diversity and in vitro and in food antimicrobial activity of the organosulfur compounds of Allium and Brassica plants are summarized. Keywords Organosulfur compounds • Garlic • Onion • Allium • Brassica • Thiosulfi nates • Glucosinolates O. Sagdic (*) Department of Food Engineering, Faculty of Chemical and Metallurgical Engineering , Yildiz Teknik University , 34220 Esenler , Istanbul , Turkey e-mail: [email protected] F. Tornuk S a fi ye Cikrikcioglu Vocational College , Erciyes University , 38039 Kayseri , Turkey A.K. Patra (ed.), Dietary Phytochemicals and Microbes, 127 DOI 10.1007/978-94-007-3926-0_4, © Springer Science+Business Media Dordrecht 2012 128 O.