Sodium Borohydride (Nabh4) Itself Is a Relatively Mild Reducing Agent
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Risto Laitinen/August 4, 2016 International Union of Pure and Applied Chemistry Division VIII Chemical Nomenclature and Structur
Approved Minutes, Busan 2015 Risto Laitinen/August 4, 2016 International Union of Pure and Applied Chemistry Division VIII Chemical Nomenclature and Structure Representation Approved Minutes of Division Committee Meeting in Busan, Korea, 8–9 August, 2015 1. Welcome, introductory remarks and housekeeping announcements Karl-Heinz Hellwich (KHH) welcomed everybody to the meeting, extending a special welcome to those who were attending the Division Committee meeting for the first time. He described house rules and arrangements during the meeting. KHH also regretfully reported that it has come to his attention that since the Bangor meeting in August 2014, Prof. Derek Horton (Member, Division VIII task groups on Carbohydrate and Flavonoids nomenclature; Associate Member, IUBMB-IUPAC Joint Commission on Biochemical Nomenclature) and Dr. Libuse Goebels, Member of the former Commission on Nomenclature of Organic Chemistry) have passed away. The meeting attendees paid a tribute to their memory by a moment of silence. 2. Attendance and apologies Present: Karl-Heinz Hellwich (president, KHH) , Risto Laitinen (acting secretary, RSL), Richard Hartshorn (past-president, RMH), Michael Beckett (MAB), Alan Hutton (ATH), Gerry P. Moss (GPM), Michelle Rogers (MMR), Jiří Vohlídal (JV), Andrey Yerin (AY) Observers: Leah McEwen (part time, chair of proposed project, LME), Elisabeth Mansfield (task group chair, EM), Johan Scheers (young observer, day 1; JS), Prof. Kazuyuki Tatsumi (past- president of the union, part of day 2) Apologies: Ture Damhus (secretary, TD), Vefa Ahsen, Kirill Degtyarenko, Gernot Eller, Mohammed Abul Hashem, Phil Hodge (PH), Todd Lowary, József Nagy, Ebbe Nordlander (EN), Amélia Pilar Rauter (APR), Hinnerk Rey (HR), John Todd, Lidija Varga-Defterdarović. -
1 Abietic Acid R Abrasive Silica for Polishing DR Acenaphthene M (LC
1 abietic acid R abrasive silica for polishing DR acenaphthene M (LC) acenaphthene quinone R acenaphthylene R acetal (see 1,1-diethoxyethane) acetaldehyde M (FC) acetaldehyde-d (CH3CDO) R acetaldehyde dimethyl acetal CH acetaldoxime R acetamide M (LC) acetamidinium chloride R acetamidoacrylic acid 2- NB acetamidobenzaldehyde p- R acetamidobenzenesulfonyl chloride 4- R acetamidodeoxythioglucopyranose triacetate 2- -2- -1- -β-D- 3,4,6- AB acetamidomethylthiazole 2- -4- PB acetanilide M (LC) acetazolamide R acetdimethylamide see dimethylacetamide, N,N- acethydrazide R acetic acid M (solv) acetic anhydride M (FC) acetmethylamide see methylacetamide, N- acetoacetamide R acetoacetanilide R acetoacetic acid, lithium salt R acetobromoglucose -α-D- NB acetohydroxamic acid R acetoin R acetol (hydroxyacetone) R acetonaphthalide (α)R acetone M (solv) acetone ,A.R. M (solv) acetone-d6 RM acetone cyanohydrin R acetonedicarboxylic acid ,dimethyl ester R acetonedicarboxylic acid -1,3- R acetone dimethyl acetal see dimethoxypropane 2,2- acetonitrile M (solv) acetonitrile-d3 RM acetonylacetone see hexanedione 2,5- acetonylbenzylhydroxycoumarin (3-(α- -4- R acetophenone M (LC) acetophenone oxime R acetophenone trimethylsilyl enol ether see phenyltrimethylsilyl... acetoxyacetone (oxopropyl acetate 2-) R acetoxybenzoic acid 4- DS acetoxynaphthoic acid 6- -2- R 2 acetylacetaldehyde dimethylacetal R acetylacetone (pentanedione -2,4-) M (C) acetylbenzonitrile p- R acetylbiphenyl 4- see phenylacetophenone, p- acetyl bromide M (FC) acetylbromothiophene 2- -5- -
N* Interactions Modulate the Properties of Cysteine Residues
n →π* Interactions Modulate the Properties of Cysteine Residues and Disulfide Bonds in Proteins The MIT Faculty has made this article openly available. Please share how this access benefits you. Your story matters. Citation Kilgore, Henry R. and Ronald T. Raines. “n →π* Interactions Modulate the Properties of Cysteine Residues and Disulfide Bonds in Proteins.” Journal of the American Chemical Society 140 (2018): 17606-17611 © 2018 The Author(s) As Published https://dx.doi.org/10.1021/JACS.8B09701 Publisher American Chemical Society (ACS) Version Author's final manuscript Citable link https://hdl.handle.net/1721.1/125597 Terms of Use Article is made available in accordance with the publisher's policy and may be subject to US copyright law. Please refer to the publisher's site for terms of use. HHS Public Access Author manuscript Author ManuscriptAuthor Manuscript Author J Am Chem Manuscript Author Soc. Author Manuscript Author manuscript; available in PMC 2019 May 21. Published in final edited form as: J Am Chem Soc. 2018 December 19; 140(50): 17606–17611. doi:10.1021/jacs.8b09701. n➝π* Interactions Modulate the Properties of Cysteine Residues and Disulfide Bonds in Proteins Henry R. Kilgore and Ronald T. Raines* Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States Abstract Noncovalent interactions are ubiquitous in biology, taking on roles that include stabilizing the conformation of and assembling biomolecules, and providing an optimal environment for enzymatic catalysis. Here, we describe a noncovalent interaction that engages the sulfur atoms of cysteine residues and disulfide bonds in proteins—their donation of electron density into an antibonding orbital of proximal amide carbonyl groups. -
Validation of a Methodology to Determine Benzene, Toluene
M. L. Gallego-Diez et al.; Revista Facultad de Ingeniería, No. 79, pp. 138-149, 2016 Revista Facultad de Ingeniería, Universidad de Antioquia, No. 79, pp. 138-149, 2016 Validation of a methodology to determine Benzene, Toluene, Ethylbenzene, and Xylenes concentration present in the air and adsorbed in activated charcoal passive samplers by GC/ FID chromatography Validación de una metodología para la determinación de la concentración de Benceno, Tolueno, Etilbenceno y Xilenos, presentes en muestras aire y adsorbidos en captadores pasivos de carbón activado, mediante cromatografía GC/FID Mary Luz Gallego-Díez1*, Mauricio Andrés Correa-Ochoa2, Julio César Saldarriaga-Molina2 1Facultad de Ingeniería, Universidad de Antioquia. Calle 67 # 53- 108. A. A. 1226. Medellín, Colombia. 2Grupo de Ingeniería y Gestión Ambiental (GIGA), Facultad de Ingeniería, Universidad de Antioquia. Calle 67 # 53- 108. A. A. 1226. Medellín, Colombia. ARTICLE INFO ABSTRACT: This article shows the validation of the analytical procedure which allows Received August 28, 2015 determining concentrations of Benzene (B), Toluene (T), Ethylbenzene (E), and Xylenes (X) Accepted April 02, 2016 -compounds known as BTEX- present in the air and adsorbed by over activated charcoal by GC-FID using the (Fluorobenzene) internal standard addition as quantification method. In the process, reference activated charcoal was employed for validation and coconut -base granular charcoal (CGC) for the construction of passive captors used in sample taken in external places or in environmental air. CGC material was selected from its recovering capacity of BTEX, with an average of 89.1% for all analytes. In this research, BTEX presence KEYWORDS in air samples, taken in a road of six lines and characterized for having heavy traffic, in Validation, activated Medellín city (Antioquia, Colombia), was analyzed. -
Irfifil'icf-E
Patented Nov. 15, 1949 2,488,479 er I PT, n irFiFil'iCf-E ' 2,488,479 ‘SEPARATION 9F PHENGLS ,FROIVI THIOPHENOLS Hans ‘Schindler, Pet-rolia, Pa., iassignor ‘to T'Ehe Pure iOil ‘ Company, Chieagoglll, a ‘corporation of Ohio No Drawing. Applicationseptember 2%,..1948, Serial No. 51,123 19 Claims. (01. 260-609) "1 2 This invention relates to a method of separat ring sulfur, wherein: the oxygen and‘sulfur are ‘at ' ing phenols from thiophenols and, in particular, it ‘:tached rclirectly 1‘ to: the nucleus. relates to an adsorption process of separating “In accordance :with- my invention, EI prefer to phenols from thiophenols whichhave' closely re ‘filter the'mixture of a “phenol and thiophenol lated ‘structures. 5 :through aibed of-silicagel until analysis: of the This application is a-continuation-in-ipart of e?luent‘liquid or '?ltratesshows that phenol‘ isl-no my'application Serial Number 547,989, now aban longer being iadsorbed zaon‘the-silica gel as indi doned, filed August “3, 1944. vcated lby-lthe ‘fact that'the- effluent has substan Phenols recovered ‘from 'coaltars ‘and petro tially thesamercomposition as thezcharge. The leum oils are frequently admixed with thiophe 10 asijlicargel-bed isitheniwashed with "a suitable-‘sol nols which occur naturally in the same media and vent, preferably 'a1.low'-'boiling hydrocarbon sol because of the chemical similarity .of the two =.vent, such as hexane?benzene or hydrocarbons types of compounds, separation is very dimcult fbo'iling :in the-gasoline range, ‘capable-of ‘remov when purely chemical means are used. This in 1mg unadsorbed :materiali held ‘in “the :?lter vbed, particular is "true when phenols are extracted 15111115 incapable of rextractingthe adsorbed con virom , their.naturallmedialbylmeans of caustical :istituents :from :the :silica gel; Following ithis vkali solution. -
THIOL OXIDATION a Slippery Slope the Oxidation of Thiols — Molecules RSH Oxidation May Proceed Too Predominates
RESEARCH HIGHLIGHTS Nature Reviews Chemistry | Published online 25 Jan 2017; doi:10.1038/s41570-016-0013 THIOL OXIDATION A slippery slope The oxidation of thiols — molecules RSH oxidation may proceed too predominates. Here, the maximum of the form RSH — can afford quickly for intermediates like RSOH rate constants indicate the order − − − These are many products. From least to most to be spotted and may also afford of reactivity: RSO > RS >> RSO2 . common oxidized, these include disulfides intractable mixtures. Addressing When the reactions are carried out (RSSR), as well as sulfenic (RSOH), the first problem, Chauvin and Pratt in methanol-d , the obtained kinetic reactions, 1 sulfinic (RSO2H) and sulfonic slowed the reactions down by using isotope effect values (kH/kD) are all but have (RSO3H) acids. Such chemistry “very sterically bulky thiols, whose in the range 1.1–1.2, indicating that historically is pervasive in nature, in which corresponding sulfenic acids were no acidic proton is transferred in the been very disulfide bonds between cysteine known to be isolable but were yet rate-determining step. Rather, the residues stabilize protein structures, to be thoroughly explored in terms oxidations involve a specific base- difficult to and where thiols and thiolates often of reactivity”. The second problem catalysed mechanism wherein an study undergo oxidation by H2O2 or O2 in was tackled by modifying the model acid–base equilibrium precedes the order to protect important biological system, 9-mercaptotriptycene, by rate-determining nucleophilic attack − − − structures from damage. Among including a fluorine substituent to of RS , RSO or RSO2 on H2O2. the oxidation products, sulfenic serve as a spectroscopic handle. -
Portage of Various Compounds Into Bacteria by Attachment to Glycine Residues in Peptides
Proc. Natl. Acad. Sci. USA Vol. 81, pp. 4573-4576, July 1984 Microbiology Portage of various compounds into bacteria by attachment to glycine residues in peptides (peptide transport/portage transport/oligopeptide permease/antimicrobial agents/bacterial transport) WILLIAM D. KINGSBURY*t, JEFFREY C. BOEHM*, DAVID PERRYt, AND CHARLES GILVARGtt *Department of Medicinal Chemistry, Research and Development Division, Smith Kline and French Laboratories, Philadelphia, PA 19101; and tDepartment of Biochemical Sciences, Princeton University, Princeton, NJ 08544 Communicated by Bernard D. Davis, March 26, 1984 ABSTRACT Synthetic di- and oligopeptides are described R that contain nucleophilic moieties attached to the a carbon of a 1 I CH X peptidase CH . glycine residue. These peptides are accepted by the peptide j transport systems of Escherichia coli (and other microorga- NH3-CH-CONH-CH-COO NH3CH-C00 + NH2-CH-COO a nisms) and are capable of being hydrolyzed by intracellular peptidases. After liberation of its amino group the a-substitut- X = NH, 0, S H20 ed glycine is chemically unstable (although it is stable in pep- R = alkyl, aryl etc. + CHO-COO + R-XH tide form) and decomposes, releasing the nucleophilic moiety. NH3 Thus, the combined result of peptide transport and peptidase FIG. 1. Structure of a-glycine-substituted peptides and their action is the intracellular release of the nucleophile. Peptides mode of breakdown after peptidase cleavage. containing glycine residues a-substituted with thiophenol, ani- line, or phenol are used as models for this type of peptide- recently (6, 7) described a method that allows the transport assisted entry and their metabolism by E. coli is described. -
Thiol-Disulfide Exchange in Human Growth Hormone Saradha Chandrasekhar Purdue University
Purdue University Purdue e-Pubs Open Access Dissertations Theses and Dissertations January 2015 Thiol-Disulfide Exchange in Human Growth Hormone Saradha Chandrasekhar Purdue University Follow this and additional works at: https://docs.lib.purdue.edu/open_access_dissertations Recommended Citation Chandrasekhar, Saradha, "Thiol-Disulfide Exchange in Human Growth Hormone" (2015). Open Access Dissertations. 1449. https://docs.lib.purdue.edu/open_access_dissertations/1449 This document has been made available through Purdue e-Pubs, a service of the Purdue University Libraries. Please contact [email protected] for additional information. i THIOL-DISULFIDE EXCHANGE IN HUMAN GROWTH HORMONE A Dissertation Submitted to the Faculty of Purdue University by Saradha Chandrasekhar In Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy August 2015 Purdue University West Lafayette, Indiana ii To my parents Chandrasekhar and Visalakshi & To my fiancé Niranjan iii ACKNOWLEDGEMENTS I would like to thank Dr. Elizabeth M. Topp for her tremendous support, guidance and valuable suggestions throughout. The successful completion of my PhD program would not have been possible without her constant encouragement and enthusiasm. Through the last five years, I’ve learned so much as a graduate student in her lab. My thesis committee members: Dr. Stephen R. Byrn, Dr. Gregory T. Knipp and Dr. Weiguo A. Tao, thank you for your time and for all your valuable comments during my oral preliminary exam. I would also like to thank Dr. Fred Regnier for his suggestions with the work on human growth hormone. I am grateful to all my lab members and friends for their assistance and support. I would like to especially thank Dr. -
In Situ Chemical Oxidation of Carbon Disulfide Using Activated Persulfate
In Situ Chemical Oxidation of Carbon Disulfide Using Activated Persulfate Ian Ross Ph.D., FMC Environmental Solutions Mark O‟Neill & Jeff Burdick, ARCADIS Saipem Innovation Award 2012 Presentation Outline Introduction to CS2 The state of the art for remediation of CS2 Project Background The approach: R&D Treatability Trials –Laboratory proof of concept Field Pilot Trials Full scale remediation Carbon Disulfide -Properties • Carbon disulphide (CS2) has been widely used as a solvent • It is generated in small quantities by natural processes, (stagnant water bodies). • It is highly volatile and extremely flammable, having a wider explosive range in air than hydrogen and a lower ignition energy. (LEL 1%) • Odour of rotting cabbages/ radishes. • Boiling point 38 oC • Specific Gravity 1.26 • Water solubility 2.3 g/L 1946 Site Layout 1995 Site Layout CS2 Remediation „State of the Art‟ 2008 Removal of CS2 DNAPL-contaminated soils after in situ mixing with bentonite slurry to stabilise the CS2 saturated material. Stabilised material was excavated and removed to approved off-site landfill Permeable Reactive Barrier (PRB) “funnel and gate” system comprising a bentonite wall directing groundwater flow to two reactive zero-valent iron “gates” in which dissolved-phase CS2 reacts to yield innocuous end-products. In situ techniques Hot Water and Co-Solvent Flushing tested at lab scale Bentonite Stabilised Dig & Dump Increased Volume for Hazardous Waste Disposal Demolition of Houses Utilities Disruption Lorries in Residential Neighbourhood Sustainability -
Room Temperature Synthesis of Lead Sulfide Nanoparticles
DOI 10.1515/mgmc-2012-0036 Main Group Met. Chem. 2012; 35(5-6): 173–178 Gholamreza Nabiyouni* , Emad Moghimi , Kambiz Hedayati and Rouhollah Jalajerdi Room temperature synthesis of lead sulfide nanoparticles Abstract: Lead sulfide (PbS) nanoparticles were synthe- properties of materials strongly depend on particle sizes sized at room temperature via a simple chemical reaction. (Ji et al., 2003; Ni et al., 2006; Yousefi et al., 2011; Salavati- In this work, thiophenol was used as the capping agent Niasari and Ghanbari, 2012). PbS is an important semicon- and sodium sulfide was used as a sulfur source. The prod- ductor material because of its exciton Bohr radius which ucts were characterized using X-ray diffraction, scanning is 18 nm at room temperature. It is well known that, if the electron microscopy, transmission electron microscopy, average crystal size of a typical semiconductor is smaller ultraviolet-visible, photoluminescence and Fourier trans- than the Bohr radius, having a small band gap and a large form infrared spectroscopy. Electron microscopy studies exciton Bohr radius makes it as an interesting system for reveal that synthesis of PbS nanoparticles using no cap- studying the effect of size confinement. PbS nanoparticles ping agent produces PbS nanoparticles with relatively may also be useful in electroluminescent devices such as large size, whereas adding thiophenol leads to the pro- light-emitting diodes and optical switches (Kuang et al., duction of nano-sized PbS particles. We found that elec- 2003; Wang et al., 2003; Chakraborty and Moulik, 2005; tronic absorption spectra as well as particle sizes depend Lu et al., 2006; Zhang et al., 2006a,b; Zhou et al., 2006). -
Protein Folding Guides Disulfide Bond Formation
Protein folding guides disulfide bond formation Meng Qina,b, Wei Wanga,1, and D. Thirumalaib,1 aNational Laboratory of Solid State Microstructure, Department of Physics, and Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing 210093, China; and bBiophysics Program, Institute for Physical Science and Technology, University of Maryland, College Park, MD 20742 Edited by Harold A. Scheraga, Cornell University, Ithaca, NY, and approved June 26, 2015 (received for review February 25, 2015) The Anfinsen principle that the protein sequence uniquely deter- Here, we investigate the coupling between conformational folding mines its structure is based on experiments on oxidative refolding of and disulfide bond formation by creating a novel way to mimic the a protein with disulfide bonds. The problem of how protein folding effect of disulfide bond formation and rupture in coarse-grained drives disulfide bond formation is poorly understood. Here, we have (CG) molecular simulations, which have proven useful in a number – solved this long-standing problem by creating a general method of applications (15 18). As a case study, we use the 58-residue bo- – for implementing the chemistry of disulfide bond formation and vine pancreatic trypsin inhibitor (BPTI) with three S Sbondsinthe rupture in coarse-grained molecular simulations. As a case study, native state to illustrate the key structural changes that occur during the folding reaction. The pioneering experiments of Creighton (9) we investigate the oxidative folding of bovine pancreatic trypsin – inhibitor (BPTI). After confirming the experimental findings that the seemed to indicate that nonnative disulfide species (19 22) are obligatory for productive folding to occur (for a thoughtful analysis, multiple routes to the folded state contain a network of states see ref. -
Acroseal Packaging Your Solution for Air- and Moisture- Sensitive Reagents
AcroSeal Packaging Your solution for air- and moisture- sensitive reagents Extra dry solvents Deuterated solvents Organometallic compounds Reagents in solution Organics Introduction Since the launch of AcroSealTM packaging we have introduced a new septum, which helps preserve product quality for longer. In addition, our AcroSeal portfolio has been expanded to include a broad range of solvents, organometallics, reagents in solution and organic compounds. In this brochure we have categorized our products under chemical families to make it easier to locate the product you need. Introduction Page no. AcroSeal packaging highlights 3 AcroSeal packaging performance 4 New 25mL AcroSeal packaging 4 Solvents Extra dry solvents 5-7 Solvents for biochemistry 7 Deuterated solvents 7 Organometallics Grignard reagents 8-10 Organoaluminiums 11 Organolithiums 11 Organosodiums 12 Organotins 12 Organozincs 12 Reagents in solution Amines 13 Boranes 13 Halides 14-15 Hydrides 15 Oxides 16 Silanes 16 Other reagents in solution 17 Organics Aldehydes 18 Amines 18 Epoxides 18 Halides 19 Phosphines 19 Silanes 19 Other organics 20 How to use AcroSeal packaging 21 Alphabetical index 22-23 2 Introduction AcroSeal packaging: drier reagents for longer When using air- and moisture-sensitive solvents and reagents, it is essential that these products are not only as dry as possible when you first use them, but they should remain dry in storage as well. Through the innovative quadrant-style screw cap and specially designed septum, AcroSeal packaging ensures that you have access to high-quality and low-moisture products every use, guaranteeing improved yield and consistency of your research experiments while reducing chemical waste. AcroSeal packaging highlights New septum developed from a polymeric elastomer with an inert fluoropolymer-coated surface, preserves product quality for longer with better re-seal around needle punctures.