Causative Agent of Ginseng Root-Rot Disease and Rusty Symptoms
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Novel Species of Cylindrocarpon (Neonectria) and Campylocarpon Gen
STUDIES IN MYCOLOGY 50: 431–455. 2004. Novel species of Cylindrocarpon (Neonectria) and Campylocarpon gen. nov. associated with black foot disease of grapevines (Vitis spp.) Francois Halleen1, Hans-Josef Schroers2,3*, Johannes Z. Groenewald3 and Pedro W. Crous3 1ARC Infruitec-Nietvoorbij (The Fruit, Vine and Wine Institute of the Agricultural Research Council), P. Bag X5026, Stellen- bosch, 7599, and the Department of Plant Pathology, University of Stellenbosch, P. Bag X1, Matieland 7602, South Africa; 2Agricultural Institute of Slovenia, Hacquetova 17, p.p. 2553, 1001 Ljubljana, Slovenia; 3Centraalbureau voor Schimmelcul- tures, P.O. Box 85167, NL-3508 AD Utrecht, The Netherlands *Correspondence: Hans-Josef Schroers, [email protected] Abstract: Four Cylindrocarpon or Cylindrocarpon-like taxa isolated from asymptomatic or diseased Vitis vinifera plants in nurseries and vineyards of South Africa, New Zealand, Australia, and France were morphologically and phylogenetically compared with other Neonectria/Cylindrocarpon taxa. Sequences of the partial nuclear large subunit ribosomal DNA (LSU rDNA), internal transcribed spacers 1 and 2 of the rDNA including the 5.8S rDNA gene (ITS), and partial ȕ-tubulin gene introns and exons were used for phylogenetic inference. Neonectria/Cylindrocarpon species clustered in mainly three groups. One monophyletic group consisted of three subclades comprising (i) members of the Neonectria radicicola/Cylindrocarpon destructans complex, which contained strains isolated from grapevines in South Africa, New Zealand, and France; (ii) a Neonectria/Cylindrocarpon species isolated from grapevines in South Africa, Canada (Ontario), Australia (Tasmania), and New Zealand, described here as Cylindrocarpon macrodidymum; and (iii) an assemblage of species closely related to strains identified as Cylindrocarpon cylindroides, the type species of Cylindrocarpon. -
Molecular Phylogeny, Detection and Epidemiology of Nectria Galligena Bres
Molecular Phylogeny, Detection and Epidemiology of Nectria galligena Bres. the incitant of Nectria Canker on Apple By Stephen Richard Henry Langrell April, 2000 Department of Biological Sciences Wye College, University of London Wye, Ashford, Kent. TN25 5AH A thesis submitted in partial fulfillment of the requirements governing the award of the degree of Doctor of Philosophy of the University of London (2) Abstract Nectria canker, incited by Nectria galligena (anamorph Cylindrocarpon heteronema), is prevalent in apple and pear orchards in all temperate growing areas of the world where it causes loss of yield by direct damage to trees, and rotting in stored fruit. Interpretation of the conventional epidemiology, from which current control measures are designed, is often inconsistent with the distribution of infections, particularly in young orchards, and may account for poor control in some areas, suggesting many original assumptions concerning pathogen biology and spread require revision. Earlier work has implicated nurseries as a source of infection. This thesis describes experiments designed to test this hypothesis and the development and application of molecular tools to examine intra- specific variation in N. galligena and its detection in woody tissue. Two experimental trials based on randomised block designs were undertaken. In the first, trees comprising cv. Queen Cox on M9 rootstocks from five UK and five continental commercial nurseries were planted at a single site in East Kent. The incidence of Nectria canker over the ensuing five years was monitored. Significant differences in percentage of trees with canker between nurseries were observed, indicating a source effect. Analysis of data from a second experiment, comprising M9 rootstocks from three nurseries, budded with cv. -
Cylindrocarpon Root Rot: Multi-Gene Analysis Reveals Novel Species Within the Ilyonectria Radicicola Species Complex
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Wageningen University & Research Publications Mycol Progress DOI 10.1007/s11557-011-0777-7 ORIGINAL ARTICLE Cylindrocarpon root rot: multi-gene analysis reveals novel species within the Ilyonectria radicicola species complex Ana Cabral & Johannes Z. Groenewald & Cecília Rego & Helena Oliveira & Pedro W. Crous Received: 29 March 2011 /Revised: 2 July 2011 /Accepted: 11 July 2011 # The Author(s) 2011. This article is published with open access at Springerlink.com Abstract Ilyonectria radicicola and its Cylindrocarpon-like hosts, the most common being Cyclamen, Lilium, Panax, anamorph represent a species complex that is commonly Pseudotsuga, Quercus and Vitis. associated with root rot disease symptoms on a range of hosts. During the course of this study, several species could Keywords Cylindrocarpon root rot . Nectria-like fungi . be distinguished from I. radicicola sensu stricto based on Phylogeny. Systematics morphological and culture characteristics. DNA sequence analysis of the partial β-tubulin, histone H3, translation elongation factor 1-α and nuclear ribosomal RNA-Internal Introduction Transcribed Spacer (nrRNA-ITS) genes were employed to provide further support for the morphological species The genus Cylindrocarpon was introduced in 1913 by resolved among 68 isolates associated with root rot disease Wollenweber, with C. cylindroides as type. Cylindrocarpon symptoms. Of the various loci screened, nrRNA-ITS and Cylindrocarpon-like species have since been commonly sequences were the least informative, while histone H3 associated with root and decay of woody and herbaceous sequences were the most informative, resolving the same plants (Domsch et al. 2007). -
Delimitation of Neonectria and Cylindrocarpon (Nectriaceae, Hypocreales, Ascomycota) and Related Genera with Cylindrocarpon-Like Anamorphs
available online at www.studiesinmycology.org StudieS in Mycology 68: 57–78. 2011. doi:10.3114/sim.2011.68.03 Delimitation of Neonectria and Cylindrocarpon (Nectriaceae, Hypocreales, Ascomycota) and related genera with Cylindrocarpon-like anamorphs P. Chaverri1*, C. Salgado1, Y. Hirooka1, 2, A.Y. Rossman2 and G.J. Samuels2 1University of Maryland, Department of Plant Sciences and Landscape Architecture, 2112 Plant Sciences Building, College Park, Maryland 20742, USA; 2United States Department of Agriculture, Agriculture Research Service, Systematic Mycology and Microbiology Laboratory, Rm. 240, B-010A, 10300 Beltsville Avenue, Beltsville, Maryland 20705, USA *Correspondence: Priscila Chaverri, [email protected] Abstract: Neonectria is a cosmopolitan genus and it is, in part, defined by its link to the anamorph genusCylindrocarpon . Neonectria has been divided into informal groups on the basis of combined morphology of anamorph and teleomorph. Previously, Cylindrocarpon was divided into four groups defined by presence or absence of microconidia and chlamydospores. Molecular phylogenetic analyses have indicated that Neonectria sensu stricto and Cylindrocarpon sensu stricto are phylogenetically congeneric. In addition, morphological and molecular data accumulated over several years have indicated that Neonectria sensu lato and Cylindrocarpon sensu lato do not form a monophyletic group and that the respective informal groups may represent distinct genera. In the present work, a multilocus analysis (act, ITS, LSU, rpb1, tef1, tub) was applied to representatives of the informal groups to determine their level of phylogenetic support as a first step towards taxonomic revision of Neonectria sensu lato. Results show five distinct highly supported clades that correspond to some extent with the informal Neonectria and Cylindrocarpon groups that are here recognised as genera: (1) N. -
Novel Species of Cylindrocarpon (Neonectria) and Campylocarpon Gen
STUDIES IN MYCOLOGY 50: 431–455. 2004. Novel species of Cylindrocarpon (Neonectria) and Campylocarpon gen. nov. associated with black foot disease of grapevines (Vitis spp.) Francois Halleen1, Hans-Josef Schroers2,3*, Johannes Z. Groenewald3 and Pedro W. Crous3 1ARC Infruitec-Nietvoorbij (The Fruit, Vine and Wine Institute of the Agricultural Research Council), P. Bag X5026, Stellen- bosch, 7599, and the Department of Plant Pathology, University of Stellenbosch, P. Bag X1, Matieland 7602, South Africa; 2Agricultural Institute of Slovenia, Hacquetova 17, p.p. 2553, 1001 Ljubljana, Slovenia; 3Centraalbureau voor Schimmelcul- tures, P.O. Box 85167, NL-3508 AD Utrecht, The Netherlands *Correspondence: Hans-Josef Schroers, [email protected] Abstract: Four Cylindrocarpon or Cylindrocarpon-like taxa isolated from asymptomatic or diseased Vitis vinifera plants in nurseries and vineyards of South Africa, New Zealand, Australia, and France were morphologically and phylogenetically compared with other Neonectria/Cylindrocarpon taxa. Sequences of the partial nuclear large subunit ribosomal DNA (LSU rDNA), internal transcribed spacers 1 and 2 of the rDNA including the 5.8S rDNA gene (ITS), and partial -tubulin gene introns and exons were used for phylogenetic inference. Neonectria/Cylindrocarpon species clustered in mainly three groups. One monophyletic group consisted of three subclades comprising (i) members of the Neonectria radicicola/Cylindrocarpon destructans complex, which contained strains isolated from grapevines in South Africa, New Zealand, and France; (ii) a Neonectria/Cylindrocarpon species isolated from grapevines in South Africa, Canada (Ontario), Australia (Tasmania), and New Zealand, described here as Cylindrocarpon macrodidymum; and (iii) an assemblage of species closely related to strains identified as Cylindrocarpon cylindroides, the type species of Cylindrocarpon. -
Characterisation of Cylindrocarpon Spp
CHARACTERISATION OF CYLINDROCARPON SPP. ASSOCIATED WITH BLACK FOOT DISEASE OF GRAPEVINE Francois Halleen Dissertation presented for the degree of Doctor of Philosophy in Agriculture at the University of Stellenbosch Promoter: Prof. Pedro W. Crous Co-promoter: Dr. Paul H. Fourie December 2005 DECLARATION I, the undersigned, hereby declare that the work contained in this dissertation is my own original work and that I have not previously in its entirety or in part been submitted it at any university for a degree. Signature: Date: http://scholar.sun.ac.za CHARACTERISATION OF CYLINDROCARPON SPP. ASSOCIATED WITH BLACK FOOT DISEASE OF GRAPEVINE SUMMARY During the past few years a drastic reduction has been noted in the survival rate of grafted grapevines in nurseries, as well as in young vineyards in the Western Cape Province of South Africa. Circumstantial evidence suggested that Cylindrocarpon spp., which cause black foot disease of grapevine, were associated with this decline. Black foot disease of grapevine is a relatively new, and as yet poorly known disease affecting vines in various countries where grapevines are cultivated. Primary aims of this research have been (1) to conduct nursery surveys in order to determine which fungi are involved in the decline phenomenon, with special reference to the involvement of Cylindrocarpon spp., (2) to identify and characterise the organisms believed to be the causal organisms of black foot disease, and (3) the development of control and/or management strategies to prevent or eradicate Cylindrocarpon infections. Nursery grapevines were sampled at different stages from three commercial nurseries in the Wellington area of the Western Cape Province and were investigated during the 19992000 season by means of destructive sampling. -
Dactylonectria and Ilyonectria Species Causing Black Foot Disease of Andean Blackberry (Rubus Glaucus Benth) in Ecuador
diversity Article Dactylonectria and Ilyonectria Species Causing Black Foot Disease of Andean Blackberry (Rubus Glaucus Benth) in Ecuador Jessica Sánchez 1, Paola Iturralde 1, Alma Koch 1, Cristina Tello 2, Dennis Martinez 1, Natasha Proaño 1, Anibal Martínez 3, William Viera 3 , Ligia Ayala 1 and Francisco Flores 1,4,* 1 Departamento de Ciencias de la Vida y la Agricultura, Universidad de las Fuerzas Armadas-ESPE, Av. General Rumiñahui, Sangolquí 171103, Ecuador; [email protected] (J.S.); [email protected] (P.I.); [email protected] (A.K.); [email protected] (D.M.); [email protected] (N.P.); [email protected] (L.A.) 2 Plant Protection Department, National Institute of Agricultural Research (INIAP), Panamericana Sur km 1, Cutuglahua 171108, Ecuador; [email protected] 3 Fruit Program, National Institute of Agricultural Research (INIAP), Av. Interoceánica km 14 1⁄2, Tumbaco 170184, Ecuador; [email protected] (A.M.); [email protected] (W.V.) 4 Centro de Investigación de Alimentos, CIAL, Facultad de Ciencias de la Ingeniería e Industrias, Universidad UTE, Quito 170147, Ecuador * Correspondence: fjfl[email protected] Received: 7 October 2019; Accepted: 29 October 2019; Published: 14 November 2019 Abstract: Andean blackberry (Rubus glaucus Benth) plants from the provinces of Tungurahua and Bolivar (Ecuador) started showing symptoms of black foot disease since 2010. Wilted plants were sampled in both provinces from 2014 to 2017, and fungal isolates were obtained from tissues surrounding necrotic lesions in the cortex of the roots and crown. Based on morphological characteristics and DNA sequencing of histone 3 and the translation elongation factor 1α gene, isolates were identified as one of seven species, Ilyonectria vredehoekensis, Ilyonectria robusta, Ilyonectria venezuelensis, Ilyonectria europaea, Dactylonectria torresensis, or Dactylonectria novozelandica. -
The Taxonomy and Ecology of Wood Decay Fungi in Eucalyptus Obliqua Trees and Logs in the Wet Sclerophyll Forests of Southern Tasmania
The taxonomy and ecology of wood decay fungi in Eucalyptus obliqua trees and logs in the wet sclerophyll forests of southern Tasmania by Anna J. M. Hopkins B.Sc. (Hons.) School of Agricultural Science, University of Tasmania Cooperative Research Centre for Forestry A research thesis submitted in fulfilment of the requirements for the Degree of Doctor of Philosophy January, 2007 Declarations This thesis contains no material which has been accepted for a degree or diploma in any university or other institution. To the best of my knowledge, this thesis contains no material previously published or written by another person, except where due acknowledgment is made in the text. Anna J. M. Hopkins This thesis may be made available for loan and limited copying in accordance with the Copyright Act of 1968. Anna J. M. Hopkins ii Abstract The wet sclerophyll forests in southern Tasmania are dominated by Eucalyptus obliqua and are managed on a notional silvicultural rotation length of 80 to 100 years. Over time, this will lead to a simplified stand structure with a truncated forest age and thus reduce the proportion of coarse woody debris (CWD), such as old living trees and large diameter logs, within the production forest landscape. Course woody debris is regarded as a critical habitat for biodiversity management in forest ecosystems. Fungi, as one of the most important wood decay agents, are key to understanding and managing biodiversity associated with decaying wood. In Australia, wood-inhabiting fungi are poorly known and the biodiversity associated with CWD has not been well studied. This thesis describes two studies that were undertaken to examine the importance of CWD as habitat for wood-inhabiting fungi in the wet sclerophyll forests of Tasmania. -
Biocontrol Via Mycoviruses: a Neglected Option for Bioprotection?
BURLEIGH DODDS SERIES IN AGRICULTURAL SCIENCE Biocontrol via mycoviruses: a neglected option for bioprotection? Anne D. van Diepeningen, BU Biointeractions and Plant Health, Wageningen University and Research, The Netherlands Biocontrol via mycoviruses: a neglected option for Biocontrol via mycoviruses: a neglected option for bioprotection? bioprotection? Biocontrol via mycoviruses: a neglected option for bioprotection? Anne D. van Diepeningen, BU Biointeractions and Plant Health, Wageningen University and Research, The Netherlands 1 Introduction 2 Mycovirus types and origins 3 Mycovirus detection and incidence 4 Mycovirus effects 5 Transmission of mycoviruses 6 Essential traits for a virocontrol product 7 Success story: Cryphonectria parasitica 8 Future trends 9 Conclusion 10 Where to look for further information 11 References 1 Introduction ‘Mycoviruses’ is the term used for viruses infecting fungi and fungus-like organisms. Mycoviruses have been reported in Ascomycota, Basidiomycota, Chytridiomycota, Deuteromycota and Zygomycota (Ghabrial et al., 2015). Most reported mycoviruses consist of linear double-stranded RNA (dsRNA; ~70%), while a small number are composed of negative single-stranded RNA (− ssRNA) or positive single-stranded RNA (+ssRNA; ~30%) (Ghabrial et al, 2015; King et al, 2011). More rarely, mycoviruses with circular single-stranded DNA (ssDNA) have been found (Jiang et al., 2013; Li et al., 2020; Yu et al., 2010). Like animal and plant viruses, mycoviruses require the living cells of their host to replicate. The main differences between animal and plant viruses on the one hand, and mycoviruses on the other, lie in the fact that most mycoviruses lack an extracellular route for infection and are transmitted between cells through cell division, sporulation and occasionally cell fusion, as well as lacking movement proteins (Son et al., 2015). -
Incidence and Characterisation of Mycoviruses from Aspergillus Fumigatus
Incidence and characterisation of mycoviruses from Aspergillus fumigatus By: Atif Jamal A thesis submitted for the degree of Doctor of Philosophy and the Diploma of Membership of Imperial College The copyright of this thesis rests with the author and no quotation from it or information derived from it may be published without the prior written consent of the author Department of Life Sciences Division of Biology Imperial College London Imperial College Road London, SW7 2AZ 1 Statement of Originality The material in this thesis has not been previously submitted for a degree in any university, and to the best of my knowledge contains no material previously published or written by another person except where due acknowledgement is made in the thesis itself. 2 For my Parents 3 Acknowledgments First of all I thank Almighty ALLAH, who gave me power to carry out the research. I am heartily thankful to my supervisor, Dr Robert Coutts, for his continuous support. His informed guidance, encouragement and support, from the preliminary to the concluding level, enabled me to develop an understanding of the subject and to complete my thesis work. His constructive criticism and comments during write-up is also highly commendable. I am also greatly indebted to Dr Elaine Bignell for the support she extended during the work related to Aspergillus fumigatus. Her patience and willingness to discuss the minutiae of the different obstacles I encountered while working were invaluable. I also extend my sincere gratitude to the members of my lab, namely, Dr Zisis Kozlakidis, Fiang Lang (Jackie) and especially Muhammad Faraz Bhatti for their support and company. -
Facilitative and Synergistic Interactions Between Fungal and Plant Viruses
Facilitative and synergistic interactions between fungal and plant viruses Ruiling Biana,1, Ida Bagus Andikab,1, Tianxing Panga, Ziqian Liana, Shuang Weia, Erbo Niua, Yunfeng Wuc, Hideki Kondod, Xili Liua, and Liying Suna,c,2 aState Key Laboratory of Crop Stress Biology for Arid Areas and College of Plant Protection, Northwest A&F University, 712100 Yangling, China; bCollege of Plant Health and Medicine, Qingdao Agricultural University, 266109 Qingdao, China; cKey Laboratory of Integrated Pest Management on Crops In Northwestern Loess Plateau, Ministry of Agriculture, Northwest A&F University, 712100 Yangling, China; and dInstitute of Plant Science and Resources, Okayama University, 710-0046 Kurashiki, Japan Edited by David C. Baulcombe, University of Cambridge, Cambridge, United Kingdom, and approved January 3, 2020 (received for review September 15, 2019) Plants and fungi are closely associated through parasitic or symbi- viral-encoded proteins related to those encoded by animal and otic relationships in which bidirectional exchanges of cellular plant viruses that function in cell entry or spread in the host contents occur. Recently, a plant virus was shown to be transmitted have been identified in fungal viruses (12, 13). Different fungal from a plant to a fungus, but it is unknown whether fungal viruses strains or species commonly exhibit vegetative incompatibility can also cross host barriers and spread to plants. In this study, we that hinders the spread of viruses via hyphal anastomosis (14), investigated the infectivity of Cryphonectria hypovirus 1 (CHV1, albeit some virus transmissions across vegetative incompatible family Hypoviridae), a capsidless, positive-sense (+), single-stranded strains or species have been observed in the laboratory or in RNA (ssRNA) fungal virus in a model plant, Nicotiana tabacum.CHV1 nature (15, 16). -
Final Policy Review
Final policy review A categorisation of invertebrate and pathogen organisms associated with fresh table grape bunches (Vitis spp.) imported from other Australian states and territories Supporting your success Contributing authors Bennington JM Research Officer – Biosecurity and Regulation, Plant Biosecurity Hammond NE Research Officer – Biosecurity and Regulation, Plant Biosecurity Hooper RG Research Officer – Biosecurity and Regulation, Plant Biosecurity Jackson SL Research Officer – Biosecurity and Regulation, Plant Biosecurity Poole MC Research Officer – Biosecurity and Regulation, Plant Biosecurity Tuten SJ Senior Policy Officer – Biosecurity and Regulation, Plant Biosecurity Department of Agriculture and Food, Western Australia Document citation DAFWA , Final policy review: A categorisation of invertebrate and pathogen organisms associated with fresh table grape bunches (Vitis spp.) imported from other Australian states and territories. Department of Agriculture and Food, Western Australia, South Perth. Copyright© Western Australian Agriculture Authority, Western Australian Government materials, including website pages, documents and online graphics, audio and video are protected by copyright law. Copyright of materials created by or for the Department of Agriculture and Food resides with the Western Australian Agriculture Authority established under the Biosecurity and Agriculture Management Act 2007. Apart from any fair dealing for the purposes of private study, research, criticism or review, as permitted under the provisions of