Strategies for Preventing and Managing Harmful Cyanobacterial Blooms
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Harmful Algae 91 (2020) 101587
Harmful Algae 91 (2020) 101587 Contents lists available at ScienceDirect Harmful Algae journal homepage: www.elsevier.com/locate/hal Review Progress and promise of omics for predicting the impacts of climate change T on harmful algal blooms Gwenn M.M. Hennona,c,*, Sonya T. Dyhrmana,b,* a Lamont-Doherty Earth Observatory, Columbia University, Palisades, NY, United States b Department of Earth and Environmental Sciences, Columbia University, New York, NY, United States c College of Fisheries and Ocean Sciences University of Alaska Fairbanks Fairbanks, AK, United States ARTICLE INFO ABSTRACT Keywords: Climate change is predicted to increase the severity and prevalence of harmful algal blooms (HABs). In the past Genomics twenty years, omics techniques such as genomics, transcriptomics, proteomics and metabolomics have trans- Transcriptomics formed that data landscape of many fields including the study of HABs. Advances in technology have facilitated Proteomics the creation of many publicly available omics datasets that are complementary and shed new light on the Metabolomics mechanisms of HAB formation and toxin production. Genomics have been used to reveal differences in toxicity Climate change and nutritional requirements, while transcriptomics and proteomics have been used to explore HAB species Phytoplankton Harmful algae responses to environmental stressors, and metabolomics can reveal mechanisms of allelopathy and toxicity. In Cyanobacteria this review, we explore how omics data may be leveraged to improve predictions of how climate change will impact HAB dynamics. We also highlight important gaps in our knowledge of HAB prediction, which include swimming behaviors, microbial interactions and evolution that can be addressed by future studies with omics tools. Lastly, we discuss approaches to incorporate current omics datasets into predictive numerical models that may enhance HAB prediction in a changing world. -
Global Ecology and Oceanography of Harmful Algal Blooms, Science Plan
GEOHAB Global Ecology and Oceanography of Harmful Algal Blooms Science Plan An International Programme Sponsored by the Scientific Committee on Oceanic Research (SCOR) and the Intergovernmental Oceanographic Commission (UNESCO) Edited by: Patricia M. Glibert and Grant Pitcher With the assistance of: Allan Cembella, John Cullen, and Yasuwo Fukuyo Based on contributions by the GEOHAB Scientific Steering Committee: Patrick Gentien, Yasuwo Fukuyo, Donald M. Anderson, Susan Blackburn, Allan Cembella, John Cullen, Malte Elbrächter, Henrik Enevoldsen, Marta Estrada, Wolfgang Fennel, Patricia M. Glibert, Elizabeth Gross, Kaisa Kononen, Nestor Lagos, Thomas Osborn, Grant Pitcher, Arturo P. Sierra-Beltrán, Steve Thorpe, Edward R. Urban, Jr., Jing Zhang, and Adriana Zingone April 2001 This report may be cited as: GEOHAB, 2001. Global Ecology and Oceanography of Harmful Algal Blooms, Science Plan. P. Glibert and G. Pitcher (eds). SCOR and IOC, Baltimore and Paris. 87 pp. Science Plan This document describes a Science Plan reviewed and approved by the Scientific Commission on Oceanic Research (SCOR) and the Intergovernmental Oceanographic Commission (IOC) of the U.N. Education, Scientific, and Cultural Organisation (UNESCO) This document is GEOHAB Report #1. Copies may be obtained from: Edward R. Urban, Jr. Henrik Enevoldsen Executive Director, SCOR Project Coordinator Department of Earth and Planetary Sciences IOC Science and Communication Centre on The Johns Hopkins University Harmful Algae Baltimore, MD 21218 U.S.A. Botanical Institute, University of Copenhagen Tel: +1-410-516-4070 Øster Farimagsgade 2D Fax: +1-410-516-4019 DK-1353 Copenhagen K, Denmark E-mail: [email protected] Tel: +45 33 13 44 46 Fax: +45 33 13 44 47 E-mail: [email protected] This report is also available on the web at: http://www.jhu.edu/~scor http://ioc.unesco.org/hab Cover photos. -
Within-Arctic Horizontal Gene Transfer As a Driver of Convergent Evolution in Distantly Related 1 Microalgae 2 Richard G. Do
bioRxiv preprint doi: https://doi.org/10.1101/2021.07.31.454568; this version posted August 2, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Within-Arctic horizontal gene transfer as a driver of convergent evolution in distantly related 2 microalgae 3 Richard G. Dorrell*+1,2, Alan Kuo3*, Zoltan Füssy4, Elisabeth Richardson5,6, Asaf Salamov3, Nikola 4 Zarevski,1,2,7 Nastasia J. Freyria8, Federico M. Ibarbalz1,2,9, Jerry Jenkins3,10, Juan Jose Pierella 5 Karlusich1,2, Andrei Stecca Steindorff3, Robyn E. Edgar8, Lori Handley10, Kathleen Lail3, Anna Lipzen3, 6 Vincent Lombard11, John McFarlane5, Charlotte Nef1,2, Anna M.G. Novák Vanclová1,2, Yi Peng3, Chris 7 Plott10, Marianne Potvin8, Fabio Rocha Jimenez Vieira1,2, Kerrie Barry3, Joel B. Dacks5, Colomban de 8 Vargas2,12, Bernard Henrissat11,13, Eric Pelletier2,14, Jeremy Schmutz3,10, Patrick Wincker2,14, Chris 9 Bowler1,2, Igor V. Grigoriev3,15, and Connie Lovejoy+8 10 11 1 Institut de Biologie de l'ENS (IBENS), Département de Biologie, École Normale Supérieure, CNRS, 12 INSERM, Université PSL, 75005 Paris, France 13 2CNRS Research Federation for the study of Global Ocean Systems Ecology and Evolution, 14 FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, 75016 Paris, France 15 3 US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 16 Cyclotron Road, Berkeley, -
Literature Review of the Microalga Prymnesium Parvum and Its Associated Toxicity
Literature Review of the Microalga Prymnesium parvum and its Associated Toxicity Sean Watson, Texas Parks and Wildlife Department, August 2001 Introduction Recent large-scale fish kills associated with the golden-alga, Prymnesium parvum, have imposed monetary and ecological losses on the state of Texas. This phytoflagellate has been implicated in fish kills around the world since the 1930’s (Reichenbach-Klinke 1973). Kills due to P. parvum blooms are normally accompanied by water with a golden-yellow coloration that foams in riffles (Rhodes and Hubbs 1992). The factors responsible for the appearance of toxic P. parvum blooms have yet to be determined. The purpose of this paper is to present a review of the work by those around the globe whom have worked with Prymnesium parvum in an attempt to better understand the biology and ecology of this organism as well as its associated toxicity. I will concentrate on the relevant biology important in the ecology and identification of this organism, its occurrence, nutritional requirements, factors governing its toxicity, and methods used to control toxic blooms with which it is associated. Background Biology and Diagnostic Features Prymnesium parvum is a microalga in the class Prymnesiophyceae, order Prymnesiales and family Prymnesiaceae, and is a common member of the marine phytoplankton (Bold and Wynne 1985, Larsen 1999, Lee 1980). It is a uninucleate, unicellular flagellate with an ellipsoid or narrowly oval cell shape (Lee 1980, Prescott 1968). Green, Hibberd and Pienaar (1982) reported that the cells range from 8-11 micrometers long and 4-6 micrometers wide. The authors also noted that the cells are PWD RP T3200-1158 (8/01) 2 Lit. -
Phylogeny, Life History, Autecology and Toxicity of Prymnesium Parvum
Phylogeny, life history, autecology and toxicity of Prymnesium parvum Bente Edvardsen1,2 and Aud Larsen3 1 University of Oslo, Norway, 2 NIVA, Norway 3 University of Bergen, Norway Distribution of Prymnesium parvum record bloom s s Overview • morphology - what it looks like • phylogeny - how is P. parvum related to other organisms • life cycle – with alternating cell types • physiology - nutrition and toxicity • autecology - growth as a function of environmental factors • occurrence of P. parvum - interpreting environmental conditions that cause blooms • how can we reduce the risk for harmful blooms? Division: Haptophyta Class: Prymnesiophyceae Species: Prymnesium parvum forms: f. parvum and f. patelliferum Morphology of P. parvum haptonema flagella chloroplast Ill.: Jahn Throndsen Photos: Wenche Eikrem scales A Light micrograph of cell B Electron micrograph of scales Organic scales covering the cells - character for species identification inside outside (Larsen 1998) Prymnesium species Species Habitat Distribution Toxic P. parvum brackish worldwide, temperate yes zone P. annuliferum marine France (Med. Sea) unknown P. calathiferum marine New Zealand yes P. faveolatum marine France, Spain yes P. nemamethecum marine S Africa, Australia unknown P. zebrinum marine France (Med. Sea) unknown P. czosnowskii, P. gladiociliatum, P. minutum, P.papillarum and P. saltans have uncertain status Haptophyte phylogeny 100/100 Pavlova aff. salina 87/57 Pavlova gyrans Pavlova CCMP1416 99/100 Pavlova CCMP 1394 Phaeocystis sp. 1 100/100 OLI51004 99/ Phaeocystis -
Integrative Taxonomy of the Pavlovophyceae (Haptophyta): a Reassessment
Protist, Vol. 162, 738–761, November 2011 http://www.elsevier.de/protis Published online date 28 June 2011 ORIGINAL PAPER Integrative Taxonomy of the Pavlovophyceae (Haptophyta): A Reassessment El Mahdi Bendifa,b,1, Ian Proberta,2, Annie Hervéc, Chantal Billardb, Didier Gouxd, Christophe Lelongb, Jean-Paul Cadoretc, and Benoît Vérona,b,3 aUniversité de Caen Basse-Normandie, Algobank-Caen, IFR 146, 14032 Caen, France bUniversité de Caen Basse-Normandie, UMR 100 PE2 M - IFREMER, 14032 Caen, France cIFREMER, Laboratoire de Physiologie et Biotechnologie des Algues, rue de l’Ile d’Yeu, BP21105, 44311 Nantes, France dUniversité de Caen Basse-Normandie, Centre de Microscopie Appliquée à la Biologie, IFR 146, 14032 Caen, France Submitted October 18, 2010; Accepted March 15, 2011 Monitoring Editor: Barry S. C. Leadbeater. The Pavlovophyceae (Haptophyta) contains four genera (Pavlova, Diacronema, Exanthemachrysis and Rebecca) and only thirteen characterised species, several of which are important in ecological and eco- nomic contexts. We have constructed molecular phylogenies inferred from sequencing of ribosomal gene markers with comprehensive coverage of the described diversity, using type strains when avail- able, together with additional cultured strains. The morphology and ultrastructure of 12 of the described species was also re-examined and the pigment signatures of many culture strains were determined. The molecular analysis revealed that sequences of all described species differed, although those of Pavlova gyrans and P. pinguis were nearly identical, these potentially forming a single cryptic species complex. Four well-delineated genetic clades were identified, one of which included species of both Pavlova and Diacronema. Unique combinations of morphological/ultrastructural characters were iden- tified for each of these clades. -
Phylogenomics Invokes the Clade Housing Cryptista, Archaeplastida, and Microheliella Maris
bioRxiv preprint doi: https://doi.org/10.1101/2021.08.29.458128; this version posted August 31, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Phylogenomics invokes the clade housing Cryptista, 2 Archaeplastida, and Microheliella maris. 3 4 Euki Yazaki1, †, *, Akinori Yabuki2, †, *, Ayaka Imaizumi3, Keitaro Kume4, Tetsuo Hashimoto5,6, 5 and Yuji Inagaki6,7 6 7 1: RIKEN iTHEMS, Wako, Saitama 351-0198, Japan 8 2: Japan Agency for Marine-Earth Science and Technology, Yokosuka, Kanagawa 236-0001, 9 Japan 10 3: College of Biological Sciences, University of Tsukuba, Tsukuba, Ibaraki, 305-8572, Japan. 11 4: Faculty of Medicine, University of Tsukuba, Tsukuba, Ibaraki, 305-8575, Japan 12 5: Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, 305- 13 8572, Japan 14 6: Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, 15 Ibaraki, 305-8572, Japan 16 7: Center for Computational Sciences, University of Tsukuba, Tsukuba, Ibaraki, 305-8572, 17 Japan 18 19 †EY and AY equally contributed to this work. 20 *Correspondence addressed to Euki Yazaki: [email protected] and Akinori Yabuki: 21 [email protected] 22 23 Running title: The clade housing Cryptista, Archaeplastida, and Microheliella maris. 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.08.29.458128; this version posted August 31, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Transcriptomic Response of the Toxic Prymnesiophyte Prymnesium Parvum
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Electronic Publication Information Center Harmful Algae 18 (2012) 1–15 Contents lists available at SciVerse ScienceDirect Harmful Algae jo urnal homepage: www.elsevier.com/locate/hal Transcriptomic response of the toxic prymnesiophyte Prymnesium parvum (N. Carter) to phosphorus and nitrogen starvation a, a,b,1 a,1 a c,d Sa´ra Beszteri *, Ines Yang , Nina Jaeckisch , Urban Tillmann , Stephan Frickenhaus , e a a Gernot Glo¨ckner , Allan Cembella , Uwe John a Department of Ecological Chemistry, Alfred Wegener Institute for Polar and Marine Research, Am Handelshafen 12, 27568 Bremerhaven, Germany b Institute of Medical Microbiology and Hospital Epidemiology, Hannover Medical School, Carl-Neuberg-Str. 1, 30625 Hannover, Germany c Computing centre/Bioinformatics, Alfred Wegener Institute for Polar and Marine Research, Am Handelshafen 12, 27568 Bremerhaven, Germany d Hochschule Bremerhaven, An der Karlstadt 8, 27568 Bremerhaven, Germany e Leibniz-Institute of Freshwater Ecology and Inland Fisheries, IGB, Mu¨ggelseedamm 301, D-12587 Berlin, Germany A R T I C L E I N F O A B S T R A C T Article history: The ichthyotoxic and mixotrophic prymnesiophyte Prymnesium parvum is known to produce dense Received 23 August 2011 virtually monospecific blooms in marine coastal, brackish, and inshore waters. Fish-killing Pyrmnesium Received in revised form 6 March 2012 blooms are often associated with macronutrient imbalanced conditions based upon shifts in ambient Accepted 6 March 2012 nitrogen (N):phosphorus (P) ratios. We therefore investigated nutrient-dependent cellular acclimation Available online 30 March 2012 mechanisms of this microalga based upon construction of a normalized expressed sequence tag (EST) library. -
The Ecology and Glycobiology of Prymnesium Parvum
The Ecology and Glycobiology of Prymnesium parvum Ben Adam Wagstaff This thesis is submitted in fulfilment of the requirements of the degree of Doctor of Philosophy at the University of East Anglia Department of Biological Chemistry John Innes Centre Norwich September 2017 ©This copy of the thesis has been supplied on condition that anyone who consults it is understood to recognise that its copyright rests with the author and that use of any information derived there from must be in accordance with current UK Copyright Law. In addition, any quotation or extract must include full attribution. Page | 1 Abstract Prymnesium parvum is a toxin-producing haptophyte that causes harmful algal blooms (HABs) globally, leading to large scale fish kills that have severe ecological and economic implications. A HAB on the Norfolk Broads, U.K, in 2015 caused the deaths of thousands of fish. Using optical microscopy and 16S rRNA gene sequencing of water samples, P. parvum was shown to dominate the microbial community during the fish-kill. Using liquid chromatography-mass spectrometry (LC-MS), the ladder-frame polyether prymnesin-B1 was detected in natural water samples for the first time. Furthermore, prymnesin-B1 was detected in the gill tissue of a deceased pike (Exos lucius) taken from the site of the bloom; clearing up literature doubt on the biologically relevant toxins and their targets. Using microscopy, natural P. parvum populations from Hickling Broad were shown to be infected by a virus during the fish-kill. A new species of lytic virus that infects P. parvum was subsequently isolated, Prymnesium parvum DNA virus (PpDNAV-BW1). -
Review of Harmful Algal Blooms in the Coastal Mediterranean Sea, with a Focus on Greek Waters
diversity Review Review of Harmful Algal Blooms in the Coastal Mediterranean Sea, with a Focus on Greek Waters Christina Tsikoti 1 and Savvas Genitsaris 2,* 1 School of Humanities, Social Sciences and Economics, International Hellenic University, 57001 Thermi, Greece; [email protected] 2 Section of Ecology and Taxonomy, School of Biology, Zografou Campus, National and Kapodistrian University of Athens, 16784 Athens, Greece * Correspondence: [email protected]; Tel.: +30-210-7274249 Abstract: Anthropogenic marine eutrophication has been recognized as one of the major threats to aquatic ecosystem health. In recent years, eutrophication phenomena, prompted by global warming and population increase, have stimulated the proliferation of potentially harmful algal taxa resulting in the prevalence of frequent and intense harmful algal blooms (HABs) in coastal areas. Numerous coastal areas of the Mediterranean Sea (MS) are under environmental pressures arising from human activities that are driving ecosystem degradation and resulting in the increase of the supply of nutrient inputs. In this review, we aim to present the recent situation regarding the appearance of HABs in Mediterranean coastal areas linked to anthropogenic eutrophication, to highlight the features and particularities of the MS, and to summarize the harmful phytoplankton outbreaks along the length of coastal areas of many localities. Furthermore, we focus on HABs documented in Greek coastal areas according to the causative algal species, the period of occurrence, and the induced damage in human and ecosystem health. The occurrence of eutrophication-induced HAB incidents during the past two decades is emphasized. Citation: Tsikoti, C.; Genitsaris, S. Review of Harmful Algal Blooms in Keywords: HABs; Mediterranean Sea; eutrophication; coastal; phytoplankton; toxin; ecosystem the Coastal Mediterranean Sea, with a health; disruptive blooms Focus on Greek Waters. -
An Under-Ice Bloom of Mixotrophic Haptophytes in Low Nutrient And
www.nature.com/scientificreports OPEN An under‑ice bloom of mixotrophic haptophytes in low nutrient and freshwater‑infuenced Arctic waters Dorte H. Søgaard1,2*, Brian K. Sorrell2, Mikael K. Sejr2,3, Per Andersen3, Søren Rysgaard1,2,4, Per Juel Hansen5, Annaliina Skyttä6, Signe Lemcke2 & Lars Chresten Lund‑Hansen2 The pelagic spring bloom is essential for Arctic marine food webs, and a crucial driver of carbon transport to the ocean depths. A critical challenge is understanding its timing and magnitude, to predict its changes in coming decades. Spring bloom onset is typically light‑limited, beginning when irradiance increases or during ice breakup. Here we report an acute 9‑day under‑ice algal bloom in nutrient‑poor, freshwater‑infuenced water under 1‑m thick sea ice. It was dominated by mixotrophic brackish water haptophytes (Chrysochromulina/ Prymnesium) that produced 5.7 g C m−2 new production. This estimate represents about half the annual pelagic production, occurring below sea ice with a large contribution from the mixotrophic algae bloom. The freshwater‑infuenced, nutrient‑ dilute and low light environment combined with mixotrophic community dominance implies that phagotrophy played a critical role in the under‑ice bloom. We argue that such blooms dominated by potentially toxic mixotrophic algae might become more common and widespread in the future Arctic Ocean. Satellite-based remote sensing data suggest that annual pelagic net primary production in shelf areas of the Arctic Ocean has increased by 20% from 1998 to 2009, mainly due to the longer seasonal duration of the ice-free period, and thus a longer pelagic growth season1. -
Program Guide
The Extended Instrument An Investigation into Sound Art and Contemporary Music Produced by the Electronic Media and Film Program (EMF) and the Music Program, New York State Council on the Arts in collaboration with Harvestworks Digital Media Arts Center. June 29, 30 - 2005 May 27 - Sept 25, 201 1 A Production of Harvestworks Program Guide www.NYEAF.org A production of Harvestworks Note From the director Harvestworks is delighted to welcome you to the 2011 New York electronic art Festival on Governors Island and other venues in New York City. the Festival is a survey of the remarkable ways that technology can alter, expand and stimulate our perceptions through the creative energies of the artist. the exhibitions, concerts, workshops and discussions have been curated and organized to offer visitors a transformative and informative aesthetic experience and to raise the visibility and public appreciation of 21st Century art by visionary american artists. the exhibition on Governors Island — WAVE(form)s — is anchored by raINForest a master sound art work which is at once a sound sculpture and an orchestra of resonant instruments. BLUe MorPH is an interactive installation fully realized when the participant is stILL and sILeNt and Pascal Perich Pascal waterwall delights the pedestrian with sonic drops of water that never Carol Parkinson, Harvestworks Director touch the ground. the concerts — WAVE(length)s — explores the sonic spaces on the Island and in the architecture of st. Paul’s Chapel and roulette. New Projects and workshops invites you to join in the discussions on how technology is shaping future art practice.