An Under-Ice Bloom of Mixotrophic Haptophytes in Low Nutrient And
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Marine Ecology Progress Series 600:21
Vol. 600: 21–39, 2018 MARINE ECOLOGY PROGRESS SERIES Published July 30 https://doi.org/10.3354/meps12663 Mar Ecol Prog Ser OPENPEN ACCESSCCESS Short-term processing of ice algal- and phytoplankton- derived carbon by Arctic benthic communities revealed through isotope labelling experiments Anni Mäkelä1,*, Ursula Witte1, Philippe Archambault2 1School of Biological Sciences, University of Aberdeen, Aberdeen AB24 3UU, UK 2Département de biologie, Québec Océan, Université Laval, Québec, QC G1V 0A6, Canada ABSTRACT: Benthic ecosystems play a significant role in the carbon (C) cycle through remineral- ization of organic matter reaching the seafloor. Ice algae and phytoplankton are major C sources for Arctic benthic consumers, but climate change-mediated loss of summer sea ice is predicted to change Arctic marine primary production by increasing phytoplankton and reducing ice algal contributions. To investigate the impact of changing algal C sources on benthic C processing, 2 isotope tracing experiments on 13C-labelled ice algae and phytoplankton were conducted in the North Water Polynya (NOW; 709 m depth) and Lancaster Sound (LS; 794 m) in the Canadian Arc- tic, during which the fate of ice algal (CIA) and phytoplankton (CPP) C added to sediment cores was traced over 4 d. No difference in sediment community oxygen consumption (SCOC, indicative of total C turnover) between the background measurements and ice algal or phytoplankton cores was found at either site. Most of the processed algal C was respired, with significantly more CPP than CIA being released as dissolved inorganic C at both sites. Macroinfaunal uptake of algal C was minor, but bacterial assimilation accounted for 33−44% of total algal C processing, with no differences in bacterial uptake of CPP and CIA found at either site. -
Harmful Algae 91 (2020) 101587
Harmful Algae 91 (2020) 101587 Contents lists available at ScienceDirect Harmful Algae journal homepage: www.elsevier.com/locate/hal Review Progress and promise of omics for predicting the impacts of climate change T on harmful algal blooms Gwenn M.M. Hennona,c,*, Sonya T. Dyhrmana,b,* a Lamont-Doherty Earth Observatory, Columbia University, Palisades, NY, United States b Department of Earth and Environmental Sciences, Columbia University, New York, NY, United States c College of Fisheries and Ocean Sciences University of Alaska Fairbanks Fairbanks, AK, United States ARTICLE INFO ABSTRACT Keywords: Climate change is predicted to increase the severity and prevalence of harmful algal blooms (HABs). In the past Genomics twenty years, omics techniques such as genomics, transcriptomics, proteomics and metabolomics have trans- Transcriptomics formed that data landscape of many fields including the study of HABs. Advances in technology have facilitated Proteomics the creation of many publicly available omics datasets that are complementary and shed new light on the Metabolomics mechanisms of HAB formation and toxin production. Genomics have been used to reveal differences in toxicity Climate change and nutritional requirements, while transcriptomics and proteomics have been used to explore HAB species Phytoplankton Harmful algae responses to environmental stressors, and metabolomics can reveal mechanisms of allelopathy and toxicity. In Cyanobacteria this review, we explore how omics data may be leveraged to improve predictions of how climate change will impact HAB dynamics. We also highlight important gaps in our knowledge of HAB prediction, which include swimming behaviors, microbial interactions and evolution that can be addressed by future studies with omics tools. Lastly, we discuss approaches to incorporate current omics datasets into predictive numerical models that may enhance HAB prediction in a changing world. -
A Persistent Giant Algal Virus, with a Unique Morphology, Encodes An
bioRxiv preprint doi: https://doi.org/10.1101/2020.07.30.228163; this version posted January 13, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 A persistent giant algal virus, with a unique morphology, encodes an 2 unprecedented number of genes involved in energy metabolism 3 4 Romain Blanc-Mathieu1,2, Håkon Dahle3, Antje Hofgaard4, David Brandt5, Hiroki 5 Ban1, Jörn Kalinowski5, Hiroyuki Ogata1 and Ruth-Anne Sandaa6* 6 7 1: Institute for Chemical Research, Kyoto University, Gokasho, Uji, 611-0011, Japan 8 2: Laboratoire de Physiologie Cellulaire & Végétale, CEA, Univ. Grenoble Alpes, 9 CNRS, INRA, IRIG, Grenoble, France 10 3: Department of Biological Sciences and K.G. Jebsen Center for Deep Sea Research, 11 University of Bergen, Bergen, Norway 12 4: Department of Biosciences, University of Oslo, Norway 13 5: Center for Biotechnology, Universität Bielefeld, Bielefeld, 33615, Germany 14 6: Department of Biological Sciences, University of Bergen, Bergen, Norway 15 *Corresponding author: Ruth-Anne Sandaa, +47 55584646, [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.07.30.228163; this version posted January 13, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 16 Abstract 17 Viruses have long been viewed as entities possessing extremely limited metabolic 18 capacities. -
Review of the Center for Computational Sciences, University of Tsukuba 2020
Review of the Center for Computational Sciences, University of Tsukuba 2020 筑波大学計算科学研究センター 外部評価報告書 September 2020 2020 年 9月 Center for Computational Sciences University of Tsukuba Review of the Center for Computational Sciences, University of Tsukuba 2014-2019 Foreword This volume contains the Report of the External Review for Center for Computational Scineces (CCS), University of Tsukuba, which was carried out in FY2019. The objective of the External Review was to evaluate the research activities of CCS during the period from FY2014 to FY2019 since the previous external review which was held in FY2013, and the future strategy and plans. Originally formed as the Center for Computational Physics (CCP) in 1992, the CCS was reorganized, expanded and relaunched under its current name in April 2004. The mission of the Center for Computational Sciences (CCS) is the promotion of "Multidisciplinary Computational Sciences" through enhanced cooperation between, and the fusion of, computational and computer sciences. The most important characteristics of the research collaboration in the CCS is “codesigning” where the needs from application fields and seeds from system technologies to make a balanced and optimized system development as well as application program development. As a unique research center where both computational and computer scientists work together, our codesigning for advanced High Performance Computing (HPC) research has been continued from the beginning until today. The CCS has developed several supercomputers, and conducted computational sciences in the areas of particle physics, astrophysics, nuclear physics, materials science, life science, environmental science, high performance computing technology, and information science including database technology and computational media. Also, the CCS plays a significant role as a nation-wide joint-use facility that provides computational resources for external scientific researchers in all of these areas all over the world. -
Hidden Food in the Coldest of Times the NUTRIENT ROLE of SEA ICE Copepods, Tiny Lipid-Rich Obtaining Sufficient Food Under Fig
UNDERSTANDING ECOSYSTEM PROCESSES IN THE BERING SEA 2007–2013 Hidden Food in the Coldest of Times THE NUTRIENT ROLE OF SEA ICE Copepods, tiny lipid-rich obtaining sufficient food under Fig. 1 crustaceans in the Bering Sea, the ice to initiate feeding and are a favored meal of larval and reproduction. A second question juvenile Pollock. One copepod is “what is this food source”? One that dominates the zooplankton possibility was the layer of ice on the Bering Sea shelf, and shelf algae—a diverse community of areas around the Arctic Ocean, microscopic plants and animals is Calanus glacialis (Figure 1). that grow under the ice during We know that the abundance of spring (Figure 2)—rather than this species fluctuates between from the more usual phytoplank- years. Surprisingly, colder years, ton community in the water when ice cover is more extensive column beneath. and persists longer during spring, appear to favor growth of the How We Did It copepod population. Why is this? We collected zooplankton We set out to answer this ques- samples to see what the C. glacialis Fig. 2 tion during a cruise in late winter population was doing, whether of 2009 through early spring of the adult females were laying eggs 2010, when ice covered most of or not, and how much food was the Bering Sea shelf. in their guts. We determined the Since reproduction and identity of individual prey spe- growth of this copepod is con- cies in their guts from their DNA trolled by the availability of food, and quantified the amount of this we thought that they must be continued on page 2 The Big Picture The high feeding rates of the copepod Calanus glacialis that we observed during a cruise in late Blocks of sea ice turned winter and early spring of 2009/2010 could not have been sustained by the low levels of phyto- upside down to reveal plankton in the water column. -
Photobiological Effects on Ice Algae of a Rapid Whole-Fjord Loss of Snow Cover During Spring Growth in Kangerlussuaq, a West Greenland Fjord
Journal of Marine Science and Engineering Article Photobiological Effects on Ice Algae of a Rapid Whole-Fjord Loss of Snow Cover during Spring Growth in Kangerlussuaq, a West Greenland Fjord Brian K. Sorrell 1,* , Ian Hawes 2 , Tanja Stratmann 3,4 and Lars Chresten Lund-Hansen 1 1 Arctic Research Centre, Department of Biology, Aarhus University, Aarhus C., DK-8000 Aarhus, Denmark; [email protected] 2 Coastal Marine Field Station, Environmental Research Institute, University of Waikato, Sulphur Point, Tauranga 3110, New Zealand; [email protected] 3 Department of Earth Sciences, Utrecht University, 3584 CB Utrecht, The Netherlands; [email protected] 4 HGF MPG Joint Research Group for Deep-Sea Ecology and Technology, Max Planck Institute for Marine Microbiology, 28359 Bremen, The Netherlands * Correspondence: [email protected] Abstract: Snow cover on sea ice is the most important factor controlling light availability for sea ice algae, but it is predicted by climate models to become more variable and stochastic. Here, we document effects of a sudden, complete loss of the entire snow cover on first-year sea ice at Kangerlussuaq Fjord, West Greenland, due to a natural Föhn wind event that caused a ca. 17 ◦C air temperature increase over 36 h. We applied Imaging-PAM fluorometry to examine effects of snow cover on algal distribution and photobiology and observed a rapid decrease in algal biomass associated with loss of the skeletal ice crystal layer on the underside of the ice that had supported most of the visible algae. Furthermore, the remaining algae were photobiologically stressed, as seen Citation: Sorrell, B.K.; Hawes, I.; in a significant decrease in the dark-acclimated fluorescence yield (F ) from 0.55 before snow Stratmann, T.; Lund-Hansen, L.C. -
Within-Arctic Horizontal Gene Transfer As a Driver of Convergent Evolution in Distantly Related 1 Microalgae 2 Richard G. Do
bioRxiv preprint doi: https://doi.org/10.1101/2021.07.31.454568; this version posted August 2, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Within-Arctic horizontal gene transfer as a driver of convergent evolution in distantly related 2 microalgae 3 Richard G. Dorrell*+1,2, Alan Kuo3*, Zoltan Füssy4, Elisabeth Richardson5,6, Asaf Salamov3, Nikola 4 Zarevski,1,2,7 Nastasia J. Freyria8, Federico M. Ibarbalz1,2,9, Jerry Jenkins3,10, Juan Jose Pierella 5 Karlusich1,2, Andrei Stecca Steindorff3, Robyn E. Edgar8, Lori Handley10, Kathleen Lail3, Anna Lipzen3, 6 Vincent Lombard11, John McFarlane5, Charlotte Nef1,2, Anna M.G. Novák Vanclová1,2, Yi Peng3, Chris 7 Plott10, Marianne Potvin8, Fabio Rocha Jimenez Vieira1,2, Kerrie Barry3, Joel B. Dacks5, Colomban de 8 Vargas2,12, Bernard Henrissat11,13, Eric Pelletier2,14, Jeremy Schmutz3,10, Patrick Wincker2,14, Chris 9 Bowler1,2, Igor V. Grigoriev3,15, and Connie Lovejoy+8 10 11 1 Institut de Biologie de l'ENS (IBENS), Département de Biologie, École Normale Supérieure, CNRS, 12 INSERM, Université PSL, 75005 Paris, France 13 2CNRS Research Federation for the study of Global Ocean Systems Ecology and Evolution, 14 FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, 75016 Paris, France 15 3 US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 16 Cyclotron Road, Berkeley, -
Diversity and Evolution of Protist Mitochondria: Introns, Gene Content and Genome Architecture
Diversity and Evolution of Protist Mitochondria: Introns, Gene Content and Genome Architecture 著者 西村 祐貴 内容記述 この博士論文は内容の要約のみの公開(または一部 非公開)になっています year 2016 その他のタイトル プロティストミトコンドリアの多様性と進化:イン トロン、遺伝子組成、ゲノム構造 学位授与大学 筑波大学 (University of Tsukuba) 学位授与年度 2015 報告番号 12102甲第7737号 URL http://hdl.handle.net/2241/00144261 Diversity and Evolution of Protist Mitochondria: Introns, Gene Content and Genome Architecture A Dissertation Submitted to the Graduate School of Life and Environmental Sciences, the University of Tsukuba in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy in Science (Doctral Program in Biologial Sciences) Yuki NISHIMURA Table of Contents Abstract ........................................................................................................................... 1 Genes encoded in mitochondrial genomes of eukaryotes ..................................................... 3 Terminology .......................................................................................................................... 4 Chapter 1. General introduction ................................................................................ 5 The origin and evolution of mitochondria ............................................................................ 5 Mobile introns in mitochondrial genome .............................................................................. 6 The organisms which are lacking in mitochondrial genome data ........................................ 8 Chapter 2. Lateral transfers of mobile introns -
Occurrence of an Algal Bloom Under Arctic Pack Ice
MARINE ECOLOGY PROGRESS SERIES Vol. 131: 301-305, 1996 Published February 8 p-- Mar Ecol Prog Serpp p -- - l NOTE Occurrence of an algal bloom under Arctic pack ice R. Gradinger Institut fur Polarokologie, WischhofstraRe 1-3, Gebaude 12, D-24148 Kiel, Germany ABSTRACT: Summer melting of sea ice leads to the formation Materials and methods. The investigation was con- of under-rce melt ponds in Arctic seas. The biological char- ducted during the RV 'Polarstern' expedition ARK IX/4 acteristics of such a pond were studied in summer 1993. from August to October 1993. Sampling of ice cores The chlorophyte Pyramimonas sp. (Prasinophyceae) formed a unialgal bloom with cell densities of 19.1 X 103 cells ml-' and and under-ice water took place at Stns (station number a pigment concentration of 29.6 mg m-" comparison with = day of the year) 230 (82"45.4'N,40" 12.2' E) and 231 ice core data revealed differences in algal biomass and com- (82O23.2' N, 40°54.9'E) At Stn 230, ice was collected munity structure. Physical data indicate that under-ice ponds from a 2 m thick multi-year ice floe. At Stn 231, we are a common feature in the Arctic Ocean. Thus, communit~es encountered a layer of thin ice (grey ice of 21 to 60 cm within under-ice ponds, which have not been included in pro- duction estimates, may slgniflcantly contribute to the Arctrc thickness) between 2 multi-year ice floes, which were marine food web more than 4 m thick (Fig. -
Literature Review of the Microalga Prymnesium Parvum and Its Associated Toxicity
Literature Review of the Microalga Prymnesium parvum and its Associated Toxicity Sean Watson, Texas Parks and Wildlife Department, August 2001 Introduction Recent large-scale fish kills associated with the golden-alga, Prymnesium parvum, have imposed monetary and ecological losses on the state of Texas. This phytoflagellate has been implicated in fish kills around the world since the 1930’s (Reichenbach-Klinke 1973). Kills due to P. parvum blooms are normally accompanied by water with a golden-yellow coloration that foams in riffles (Rhodes and Hubbs 1992). The factors responsible for the appearance of toxic P. parvum blooms have yet to be determined. The purpose of this paper is to present a review of the work by those around the globe whom have worked with Prymnesium parvum in an attempt to better understand the biology and ecology of this organism as well as its associated toxicity. I will concentrate on the relevant biology important in the ecology and identification of this organism, its occurrence, nutritional requirements, factors governing its toxicity, and methods used to control toxic blooms with which it is associated. Background Biology and Diagnostic Features Prymnesium parvum is a microalga in the class Prymnesiophyceae, order Prymnesiales and family Prymnesiaceae, and is a common member of the marine phytoplankton (Bold and Wynne 1985, Larsen 1999, Lee 1980). It is a uninucleate, unicellular flagellate with an ellipsoid or narrowly oval cell shape (Lee 1980, Prescott 1968). Green, Hibberd and Pienaar (1982) reported that the cells range from 8-11 micrometers long and 4-6 micrometers wide. The authors also noted that the cells are PWD RP T3200-1158 (8/01) 2 Lit. -
Insights Into Alexandrium Minutum Nutrient Acquisition, Metabolism and Saxitoxin Biosynthesis Through Comprehensive Transcriptome Survey
biology Article Insights into Alexandrium minutum Nutrient Acquisition, Metabolism and Saxitoxin Biosynthesis through Comprehensive Transcriptome Survey Muhamad Afiq Akbar 1, Nurul Yuziana Mohd Yusof 2 , Fathul Karim Sahrani 2, Gires Usup 2, Asmat Ahmad 1, Syarul Nataqain Baharum 3 , Nor Azlan Nor Muhammad 3 and Hamidun Bunawan 3,* 1 Department of Biological Sciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, Bangi 43600, Malaysia; muhdafi[email protected] (M.A.A.); [email protected] (A.A.) 2 Department of Earth Science and Environment, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, Bangi 43600, Malaysia; [email protected] (N.Y.M.Y.); [email protected] (F.K.S.); [email protected] (G.U.) 3 Institute of System Biology, Universiti Kebangsaan Malaysia, Bangi 43600, Malaysia; [email protected] (S.N.B.); [email protected] (N.A.N.M.) * Correspondence: [email protected]; Tel.: +60-389-214-570 Simple Summary: Alexandrium minutum is one of the causing organisms for the occurrence of harmful algae bloom (HABs) in marine ecosystems. This species produces saxitoxin, one of the deadliest neurotoxins which can cause human mortality. However, molecular information such as genes and proteins catalog on this species is still lacking. Therefore, this study has successfully Citation: Akbar, M.A.; Yusof, N.Y.M.; characterized several new molecular mechanisms regarding A. minutum environmental adaptation Sahrani, F.K.; Usup, G.; Ahmad, A.; and saxitoxin biosynthesis. Ultimately, this study provides a valuable resource for facilitating future Baharum, S.N.; Muhammad, N.A.N.; dinoflagellates’ molecular response to environmental changes. -
Introns, Gene Content and Genome Architecture
Diversity and Evolution of Protist Mitochondria: Introns, Gene Content and Genome Architecture A Dissertation Submitted to the Graduate School of Life and Environmental Sciences, the University of Tsukuba in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy in Science (Doctral Program in Biologial Sciences) Yuki NISHIMURA Table of Contents Abstract ........................................................................................................................... 1 Genes encoded in mitochondrial genomes of eukaryotes ..................................................... 3 Terminology .......................................................................................................................... 4 Chapter 1. General introduction ................................................................................ 5 The origin and evolution of mitochondria ............................................................................ 5 Mobile introns in mitochondrial genome .............................................................................. 6 The organisms which are lacking in mitochondrial genome data ........................................ 8 Chapter 2. Lateral transfers of mobile introns among distantly related mitochondrial genomes ................................................................................................ 11 Summary ................................................................................................................................ 11 2-1. Leucocryptos