The Morphology of Chrysochromulina Rotalis Sp. Nov. (Prymnesiophyceae, Haptophyta), Isolated from the Skagerrak
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Ecology of Oceanic Coccolithophores. I. Nutritional Preferences of the Two Stages in the Life Cycle of Coccolithus Braarudii and Calcidiscus Leptoporus
AQUATIC MICROBIAL ECOLOGY Vol. 44: 291–301, 2006 Published October 10 Aquat Microb Ecol Ecology of oceanic coccolithophores. I. Nutritional preferences of the two stages in the life cycle of Coccolithus braarudii and Calcidiscus leptoporus Aude Houdan, Ian Probert, Céline Zatylny, Benoît Véron*, Chantal Billard Laboratoire de Biologie et Biotechnologies Marines, Université de Caen Basse-Normandie, Esplanade de la Paix, 14032 Caen Cedex, France ABSTRACT: Coccolithus braarudii and Calcidiscus leptoporus are 2 coccolithophores (Prymnesio- phyceae: Haptophyta) known to possess a complex heteromorphic life cycle, with alternation between a motile holococcolith-bearing haploid stage and a non-motile heterococcolith-bearing diploid stage. The ecological implications of this type of life cycle in coccolithophores are currently poorly known. The nutritional preferences of each stage of both species, and their growth response to conditions of turbulence were investigated by varying their growth conditions. Of the different cul- ture media tested, only the synthetic seawater medium did not support the growth of both stages of C. braarudii and C. leptoporus. With natural seawater-based media, the growth rate of the haploid phase of both coccolithophores was stimulated by the addition of soil extract (K/2: 0.23 ± 0.02 d–1 and K/2 with soil extract 0.35 ± 0.01 d–1 for the C. braarudii haploid stage), while the diploid phase was not, indicating that the motile stage is capable of utilizing compounds present in soil extract or ingest- ing bacteria that are activated in enriched media. The addition of sodium acetate to the medium also stimulated the haploid phase of C. -
Harmful Algae 91 (2020) 101587
Harmful Algae 91 (2020) 101587 Contents lists available at ScienceDirect Harmful Algae journal homepage: www.elsevier.com/locate/hal Review Progress and promise of omics for predicting the impacts of climate change T on harmful algal blooms Gwenn M.M. Hennona,c,*, Sonya T. Dyhrmana,b,* a Lamont-Doherty Earth Observatory, Columbia University, Palisades, NY, United States b Department of Earth and Environmental Sciences, Columbia University, New York, NY, United States c College of Fisheries and Ocean Sciences University of Alaska Fairbanks Fairbanks, AK, United States ARTICLE INFO ABSTRACT Keywords: Climate change is predicted to increase the severity and prevalence of harmful algal blooms (HABs). In the past Genomics twenty years, omics techniques such as genomics, transcriptomics, proteomics and metabolomics have trans- Transcriptomics formed that data landscape of many fields including the study of HABs. Advances in technology have facilitated Proteomics the creation of many publicly available omics datasets that are complementary and shed new light on the Metabolomics mechanisms of HAB formation and toxin production. Genomics have been used to reveal differences in toxicity Climate change and nutritional requirements, while transcriptomics and proteomics have been used to explore HAB species Phytoplankton Harmful algae responses to environmental stressors, and metabolomics can reveal mechanisms of allelopathy and toxicity. In Cyanobacteria this review, we explore how omics data may be leveraged to improve predictions of how climate change will impact HAB dynamics. We also highlight important gaps in our knowledge of HAB prediction, which include swimming behaviors, microbial interactions and evolution that can be addressed by future studies with omics tools. Lastly, we discuss approaches to incorporate current omics datasets into predictive numerical models that may enhance HAB prediction in a changing world. -
A Persistent Giant Algal Virus, with a Unique Morphology, Encodes An
bioRxiv preprint doi: https://doi.org/10.1101/2020.07.30.228163; this version posted January 13, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 A persistent giant algal virus, with a unique morphology, encodes an 2 unprecedented number of genes involved in energy metabolism 3 4 Romain Blanc-Mathieu1,2, Håkon Dahle3, Antje Hofgaard4, David Brandt5, Hiroki 5 Ban1, Jörn Kalinowski5, Hiroyuki Ogata1 and Ruth-Anne Sandaa6* 6 7 1: Institute for Chemical Research, Kyoto University, Gokasho, Uji, 611-0011, Japan 8 2: Laboratoire de Physiologie Cellulaire & Végétale, CEA, Univ. Grenoble Alpes, 9 CNRS, INRA, IRIG, Grenoble, France 10 3: Department of Biological Sciences and K.G. Jebsen Center for Deep Sea Research, 11 University of Bergen, Bergen, Norway 12 4: Department of Biosciences, University of Oslo, Norway 13 5: Center for Biotechnology, Universität Bielefeld, Bielefeld, 33615, Germany 14 6: Department of Biological Sciences, University of Bergen, Bergen, Norway 15 *Corresponding author: Ruth-Anne Sandaa, +47 55584646, [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.07.30.228163; this version posted January 13, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 16 Abstract 17 Viruses have long been viewed as entities possessing extremely limited metabolic 18 capacities. -
Review of the Center for Computational Sciences, University of Tsukuba 2020
Review of the Center for Computational Sciences, University of Tsukuba 2020 筑波大学計算科学研究センター 外部評価報告書 September 2020 2020 年 9月 Center for Computational Sciences University of Tsukuba Review of the Center for Computational Sciences, University of Tsukuba 2014-2019 Foreword This volume contains the Report of the External Review for Center for Computational Scineces (CCS), University of Tsukuba, which was carried out in FY2019. The objective of the External Review was to evaluate the research activities of CCS during the period from FY2014 to FY2019 since the previous external review which was held in FY2013, and the future strategy and plans. Originally formed as the Center for Computational Physics (CCP) in 1992, the CCS was reorganized, expanded and relaunched under its current name in April 2004. The mission of the Center for Computational Sciences (CCS) is the promotion of "Multidisciplinary Computational Sciences" through enhanced cooperation between, and the fusion of, computational and computer sciences. The most important characteristics of the research collaboration in the CCS is “codesigning” where the needs from application fields and seeds from system technologies to make a balanced and optimized system development as well as application program development. As a unique research center where both computational and computer scientists work together, our codesigning for advanced High Performance Computing (HPC) research has been continued from the beginning until today. The CCS has developed several supercomputers, and conducted computational sciences in the areas of particle physics, astrophysics, nuclear physics, materials science, life science, environmental science, high performance computing technology, and information science including database technology and computational media. Also, the CCS plays a significant role as a nation-wide joint-use facility that provides computational resources for external scientific researchers in all of these areas all over the world. -
Aquatic Species Program Review Proceedings of the March 1985 Principal Investigators Meeting
NOTICE This report was prepared as an account of work sponsored by the United States Government. Neither the United States nor the United States Department of Energy, nor any of their employees, nor any of their contractors, subcontractors, or their employees, makes any warranty, expressed or implied, or assumes any legai liability or responsibility for the accuracy, completeness or usefulness of any information, apparatus, product or process disclosed, or represents that its use would not infringe privately owned rights. Printed in the United States of America Available from: National Technical Information Service U.S. Departmenr of Commerce 5285 Port Royal Road Springfield, VA 221 61 Price: Microfiche A01 Printed Copy A1 6 Codes are ~sedfor pricing ail publications. The code is determined by the number of pages in the publication. lnformation pertaining to the pricing codes can be found in the current issue of the following publications, which are generally available in most tibraries; Energy Research Abstracts. (ERA); Government Reports Announcements and Index (GRA and I); Scientific and Technical Abstract Reports (STAR;; and publication. NTIS-PR-360 available from NT1S at the above address. SER IICP-231-2700 UC Category: 61c DE85Ol2137 Aquatic Species Program Review Proceedings of the March 1985 Principal Investigators Meeting 20 - 21 March 1985 Golden, CO June 1985 Prepared under Task No. 4513.10 FTP No. 513 Solar Energy Research Institute A Division of Midwest Research Institute 1617 Cole Boulevard Golden, Colorado 80401 Prepared for the U.S. Department of Energy Contract No. DE-AC02-83CH10093 PREFACE This volume contains progress reports presented by the Aquatic Species Program subcontractors and SERl researchers at the SERl Aquatic Species Review held at SERI, March 20 and 2 1, 1985. -
Diversity and Evolution of Protist Mitochondria: Introns, Gene Content and Genome Architecture
Diversity and Evolution of Protist Mitochondria: Introns, Gene Content and Genome Architecture 著者 西村 祐貴 内容記述 この博士論文は内容の要約のみの公開(または一部 非公開)になっています year 2016 その他のタイトル プロティストミトコンドリアの多様性と進化:イン トロン、遺伝子組成、ゲノム構造 学位授与大学 筑波大学 (University of Tsukuba) 学位授与年度 2015 報告番号 12102甲第7737号 URL http://hdl.handle.net/2241/00144261 Diversity and Evolution of Protist Mitochondria: Introns, Gene Content and Genome Architecture A Dissertation Submitted to the Graduate School of Life and Environmental Sciences, the University of Tsukuba in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy in Science (Doctral Program in Biologial Sciences) Yuki NISHIMURA Table of Contents Abstract ........................................................................................................................... 1 Genes encoded in mitochondrial genomes of eukaryotes ..................................................... 3 Terminology .......................................................................................................................... 4 Chapter 1. General introduction ................................................................................ 5 The origin and evolution of mitochondria ............................................................................ 5 Mobile introns in mitochondrial genome .............................................................................. 6 The organisms which are lacking in mitochondrial genome data ........................................ 8 Chapter 2. Lateral transfers of mobile introns -
Literature Review of the Microalga Prymnesium Parvum and Its Associated Toxicity
Literature Review of the Microalga Prymnesium parvum and its Associated Toxicity Sean Watson, Texas Parks and Wildlife Department, August 2001 Introduction Recent large-scale fish kills associated with the golden-alga, Prymnesium parvum, have imposed monetary and ecological losses on the state of Texas. This phytoflagellate has been implicated in fish kills around the world since the 1930’s (Reichenbach-Klinke 1973). Kills due to P. parvum blooms are normally accompanied by water with a golden-yellow coloration that foams in riffles (Rhodes and Hubbs 1992). The factors responsible for the appearance of toxic P. parvum blooms have yet to be determined. The purpose of this paper is to present a review of the work by those around the globe whom have worked with Prymnesium parvum in an attempt to better understand the biology and ecology of this organism as well as its associated toxicity. I will concentrate on the relevant biology important in the ecology and identification of this organism, its occurrence, nutritional requirements, factors governing its toxicity, and methods used to control toxic blooms with which it is associated. Background Biology and Diagnostic Features Prymnesium parvum is a microalga in the class Prymnesiophyceae, order Prymnesiales and family Prymnesiaceae, and is a common member of the marine phytoplankton (Bold and Wynne 1985, Larsen 1999, Lee 1980). It is a uninucleate, unicellular flagellate with an ellipsoid or narrowly oval cell shape (Lee 1980, Prescott 1968). Green, Hibberd and Pienaar (1982) reported that the cells range from 8-11 micrometers long and 4-6 micrometers wide. The authors also noted that the cells are PWD RP T3200-1158 (8/01) 2 Lit. -
PRYMNESIUM FAVEOLATUM SP. NOV. (PRYMNESIOPHYCEAE), a NEW TOXIC SPECIES from the MEDITERRANEAN SEA J Fresnel, I
PRYMNESIUM FAVEOLATUM SP. NOV. (PRYMNESIOPHYCEAE), A NEW TOXIC SPECIES FROM THE MEDITERRANEAN SEA J Fresnel, I. Probert, C. Billard To cite this version: J Fresnel, I. Probert, C. Billard. PRYMNESIUM FAVEOLATUM SP. NOV. (PRYMNESIO- PHYCEAE), A NEW TOXIC SPECIES FROM THE MEDITERRANEAN SEA. Vie et Milieu / Life & Environment, Observatoire Océanologique - Laboratoire Arago, 2001, pp.89-97. hal-03192104 HAL Id: hal-03192104 https://hal.sorbonne-universite.fr/hal-03192104 Submitted on 7 Apr 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. VIE ET MILIEU, 2001, 51 (1-2) : 89-97 PRYMNESIUM FAVEOLATUM SP. NOV. (PRYMNESIOPHYCEAE), A NEW TOXIC SPECIES FROM THE MEDITERRANEAN SEA /. FRESNEL, I. PROBERT, C. BILLARD Laboratoire de Biologie et Biotechnologies Marines, Université de Caen, Esplanade de la Paix, 14032 Caen Cedex, France PRYMNESIUM FAVEOLATUM SP. NOV. ABSTRACT. - A new marine species of Prymnesium is described based on cultu- PRYMNESIOPHYCEAE red material originating from a sublittoral sample collected on the eastern French SCALES Mediterranean coast. Prymnesium faveolatum sp. nov. exhibits typical generic cha- ULTRASTRUCTURE TOXICITY racters in terms of cell morphometry, swimming mode and organelle arrangement. MEDITERRANEAN Organic body scales, présent in several proximal layers, have a narrow inflexed rim and are ornamented with a variably developed cross. -
Insights Into Alexandrium Minutum Nutrient Acquisition, Metabolism and Saxitoxin Biosynthesis Through Comprehensive Transcriptome Survey
biology Article Insights into Alexandrium minutum Nutrient Acquisition, Metabolism and Saxitoxin Biosynthesis through Comprehensive Transcriptome Survey Muhamad Afiq Akbar 1, Nurul Yuziana Mohd Yusof 2 , Fathul Karim Sahrani 2, Gires Usup 2, Asmat Ahmad 1, Syarul Nataqain Baharum 3 , Nor Azlan Nor Muhammad 3 and Hamidun Bunawan 3,* 1 Department of Biological Sciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, Bangi 43600, Malaysia; muhdafi[email protected] (M.A.A.); [email protected] (A.A.) 2 Department of Earth Science and Environment, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, Bangi 43600, Malaysia; [email protected] (N.Y.M.Y.); [email protected] (F.K.S.); [email protected] (G.U.) 3 Institute of System Biology, Universiti Kebangsaan Malaysia, Bangi 43600, Malaysia; [email protected] (S.N.B.); [email protected] (N.A.N.M.) * Correspondence: [email protected]; Tel.: +60-389-214-570 Simple Summary: Alexandrium minutum is one of the causing organisms for the occurrence of harmful algae bloom (HABs) in marine ecosystems. This species produces saxitoxin, one of the deadliest neurotoxins which can cause human mortality. However, molecular information such as genes and proteins catalog on this species is still lacking. Therefore, this study has successfully Citation: Akbar, M.A.; Yusof, N.Y.M.; characterized several new molecular mechanisms regarding A. minutum environmental adaptation Sahrani, F.K.; Usup, G.; Ahmad, A.; and saxitoxin biosynthesis. Ultimately, this study provides a valuable resource for facilitating future Baharum, S.N.; Muhammad, N.A.N.; dinoflagellates’ molecular response to environmental changes. -
Introns, Gene Content and Genome Architecture
Diversity and Evolution of Protist Mitochondria: Introns, Gene Content and Genome Architecture A Dissertation Submitted to the Graduate School of Life and Environmental Sciences, the University of Tsukuba in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy in Science (Doctral Program in Biologial Sciences) Yuki NISHIMURA Table of Contents Abstract ........................................................................................................................... 1 Genes encoded in mitochondrial genomes of eukaryotes ..................................................... 3 Terminology .......................................................................................................................... 4 Chapter 1. General introduction ................................................................................ 5 The origin and evolution of mitochondria ............................................................................ 5 Mobile introns in mitochondrial genome .............................................................................. 6 The organisms which are lacking in mitochondrial genome data ........................................ 8 Chapter 2. Lateral transfers of mobile introns among distantly related mitochondrial genomes ................................................................................................ 11 Summary ................................................................................................................................ 11 2-1. Leucocryptos -
Emerging Interaction Patterns in the Emiliania Huxleyi-Ehv System
viruses Article Emerging Interaction Patterns in the Emiliania huxleyi-EhV System Eliana Ruiz 1,*, Monique Oosterhof 1,2, Ruth-Anne Sandaa 1, Aud Larsen 1,3 and António Pagarete 1 1 Department of Biology, University of Bergen, Bergen 5006, Norway; [email protected] (R.-A.S.); [email protected] (A.P.) 2 NRL for fish, Shellfish and Crustacean Diseases, Central Veterinary Institute of Wageningen UR, Lelystad 8221 RA, The Nederlands; [email protected] 3 Uni Research Environment, Nygårdsgaten 112, Bergen 5008, Norway; [email protected] * Correspondence: [email protected]; Tel.: +47-5558-8194 Academic Editors: Mathias Middelboe and Corina Brussaard Received: 30 January 2017; Accepted: 16 March 2017; Published: 22 March 2017 Abstract: Viruses are thought to be fundamental in driving microbial diversity in the oceanic planktonic realm. That role and associated emerging infection patterns remain particularly elusive for eukaryotic phytoplankton and their viruses. Here we used a vast number of strains from the model system Emiliania huxleyi/Emiliania huxleyi Virus to quantify parameters such as growth rate (µ), resistance (R), and viral production (Vp) capacities. Algal and viral abundances were monitored by flow cytometry during 72-h incubation experiments. The results pointed out higher viral production capacity in generalist EhV strains, and the virus-host infection network showed a strong co-evolution pattern between E. huxleyi and EhV populations. The existence of a trade-off between resistance and growth capacities was not confirmed. Keywords: Phycodnaviridae; Coccolithovirus; Coccolithophore; Haptophyta; Killing-the-winner; cost of resistance; infectivity trade-offs; algae virus; marine viral ecology; viral-host interactions 1. -
Public Incentives Harmful to Biodiversity
REPORTS & DOCUMENTS Public Incentives Harmful to Biodiversity Sustainable Development Report of the commission chaired by Guillaume Sainteny Public Incentives Harmful to Biodiversity Guillaume Sainteny Chairman Jean-Michel Salles Vice-Chairman Peggy Duboucher, Géraldine Ducos, Vincent Marcus, Erwan Paul Rapporteurs Dominique Auverlot, Jean-Luc Pujol Coordinators October 2011 March 2015 for the English version Foreword Public debate has sometimes tended to equate preservation of biodiversity with the emblematic fate of certain endangered species. We now know the importance of protecting fauna and flora as a whole, not only in certain “hotspots” upon the earth, but even in our local meadows and lawns. Of course, this involves not only the variety of species – and thereby the planet’s genetic heritage –, but also the many interactions between the latter (through pollination, predation and symbiosis) and the full scope of “services rendered” to mankind. For even though we are not always aware of it, mankind benefits from the immense services freely provided by ecosystems. This is the source from which we draw our food, as well as fuel and building materials. Apart from these “appropriable” goods, biodiversity enables the purification of water, climate stabilisation and mitigation, and the regulation of floods, droughts and epidemics. In short, biodiversity is vital for us. Yet, throughout the world, an increasingly rapid rate of decline in biodiversity has been observed for several decades, giving rise to fears of serious upheavals in our