Physical Properties of Botanical Surfactants
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Contributions to the Solution of Phylogenetic Problem in Fabales
Research Article Bartın University International Journal of Natural and Applied Sciences Araştırma Makalesi JONAS, 2(2): 195-206 e-ISSN: 2667-5048 31 Aralık/December, 2019 CONTRIBUTIONS TO THE SOLUTION OF PHYLOGENETIC PROBLEM IN FABALES Deniz Aygören Uluer1*, Rahma Alshamrani 2 1 Ahi Evran University, Cicekdagi Vocational College, Department of Plant and Animal Production, 40700 Cicekdagi, KIRŞEHIR 2 King Abdulaziz University, Department of Biological Sciences, 21589, JEDDAH Abstract Fabales is a cosmopolitan angiosperm order which consists of four families, Leguminosae (Fabaceae), Polygalaceae, Surianaceae and Quillajaceae. The monophyly of the order is supported strongly by several studies, although interfamilial relationships are still poorly resolved and vary between studies; a situation common in higher level phylogenetic studies of ancient, rapid radiations. In this study, we carried out simulation analyses with previously published matK and rbcL regions. The results of our simulation analyses have shown that Fabales phylogeny can be solved and the 5,000 bp fast-evolving data type may be sufficient to resolve the Fabales phylogeny question. In our simulation analyses, while support increased as the sequence length did (up until a certain point), resolution showed mixed results. Interestingly, the accuracy of the phylogenetic trees did not improve with the increase in sequence length. Therefore, this study sounds a note of caution, with respect to interpreting the results of the “more data” approach, because the results have shown that large datasets can easily support an arbitrary root of Fabales. Keywords: Data type, Fabales, phylogeny, sequence length, simulation. 1. Introduction Fabales Bromhead is a cosmopolitan angiosperm order which consists of four families, Leguminosae (Fabaceae) Juss., Polygalaceae Hoffmanns. -
Combined Phylogenetic Analyses Reveal Interfamilial Relationships and Patterns of floral Evolution in the Eudicot Order Fabales
Cladistics Cladistics 1 (2012) 1–29 10.1111/j.1096-0031.2012.00392.x Combined phylogenetic analyses reveal interfamilial relationships and patterns of floral evolution in the eudicot order Fabales M. Ange´ lica Belloa,b,c,*, Paula J. Rudallb and Julie A. Hawkinsa aSchool of Biological Sciences, Lyle Tower, the University of Reading, Reading, Berkshire RG6 6BX, UK; bJodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3DS, UK; cReal Jardı´n Bota´nico-CSIC, Plaza de Murillo 2, CP 28014 Madrid, Spain Accepted 5 January 2012 Abstract Relationships between the four families placed in the angiosperm order Fabales (Leguminosae, Polygalaceae, Quillajaceae, Surianaceae) were hitherto poorly resolved. We combine published molecular data for the chloroplast regions matK and rbcL with 66 morphological characters surveyed for 73 ingroup and two outgroup species, and use Parsimony and Bayesian approaches to explore matrices with different missing data. All combined analyses using Parsimony recovered the topology Polygalaceae (Leguminosae (Quillajaceae + Surianaceae)). Bayesian analyses with matched morphological and molecular sampling recover the same topology, but analyses based on other data recover a different Bayesian topology: ((Polygalaceae + Leguminosae) (Quillajaceae + Surianaceae)). We explore the evolution of floral characters in the context of the more consistent topology: Polygalaceae (Leguminosae (Quillajaceae + Surianaceae)). This reveals synapomorphies for (Leguminosae (Quillajaceae + Suri- anaceae)) as the presence of free filaments and marginal ⁄ ventral placentation, for (Quillajaceae + Surianaceae) as pentamery and apocarpy, and for Leguminosae the presence of an abaxial median sepal and unicarpellate gynoecium. An octamerous androecium is synapomorphic for Polygalaceae. The development of papilionate flowers, and the evolutionary context in which these phenotypes appeared in Leguminosae and Polygalaceae, shows that the morphologies are convergent rather than synapomorphic within Fabales. -
TESIS EFECTO DE LA ADICIÓN DE AGUA.Image.Marked.Pdf
Universidad de Concepción Facultad de Ciencias Forestales Programa de Magíster en Ciencias Forestales EFECTO DE LA ADICIÓN DE AGUA Y NUTRIENTES EN EL CRECIMIENTO E INTERCAMBIO GASEOSO DE Quillaja saponaria Molina (Quillajaceae) POR NATALIA PAZ NAVARRO FUENZALIDA Tesis presentada a la Facultad de Ciencias Forestales de la Universidad de Concepción para optar al grado académico de Magíster en Ciencias Forestales Profesor Guía: Rafael Rubilar Pons Septiembre 2020 CONCEPCIÓN – CHILE © 2020. NATALIA PAZ NAVARRO FUENZALIDA Se autoriza la reproducción total o parcial, con fines académicos, por cualquier medio o procedimiento, incluyendo la cita bibliográfica del documento. iii TABLA DE CONTENIDO ÍNDICE DE TABLAS _____________________________________________ V ÍNDICE DE ILUSTRACIONES _____________________________________ VI RESUMEN ____________________________________________________ VII ABSTRACT __________________________________________________ VIII I. ANTECEDENTES DE Quillaja saponaria Molina ____________________ 1 INTRODUCCIÓN 1 ANTECEDENTES GENERALES DE QUILLAY 4 Taxonomía 4 Descripción general de la especie 5 Distribución territorial y asociaciones 9 Requerimientos ambientales 9 Estado de conservación 10 Interés económico 10 Normativa para su intervención o manejo 12 Silvicultura 12 ALGUNOS EXPERIMENTOS DE CONDICIONES CONTRASTANTES DE DISPONIBILIDAD HÍDRICA Y NUTRICIONAL REALIZADOS CON QUILLAY 14 Estudios de parámetros morfológicos 14 Estudios de parámetros fisiológicos 21 DISCUSIÓN 25 Efecto de la adición de agua y nutrientes en el crecimiento -
IMXQB-80: a Quillaja Brasiliensis Saponin-Based Nanoadjuvant Enhances Zika Virus Specific Immune Responses in Mice
Vaccine 39 (2021) 571–579 Contents lists available at ScienceDirect Vaccine journal homepage: www.elsevier.com/locate/vaccine IMXQB-80: A Quillaja brasiliensis saponin-based nanoadjuvant enhances Zika virus specific immune responses in mice Samuel Cibulski a,b,1, Thais Fumaco Teixeira b,1, Ana Paula Muterle Varela b,1, Matheus Fabião de Lima a, Gabriela Casanova c, Yuri Mangueira Nascimento d, Josean Fechine Tavares d, Marcelo Sobral da Silva d, ⇑ Patrícia Sesterheim e, Diogo Onofre Souza f, Paulo Michel Roehe b, Fernando Silveira g, a Centro de Biotecnologia – CBiotec, Laboratório de Biotecnologia Celular e Molecular, Universidade Federal da Paraíba, João Pessoa, Paraíba, Brazil b Departamento de Microbiologia Imunologia e Parasitologia, Laboratório de Virologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, Porto Alegre, Rio Grande do Sul, Brazil c Unidad de Microscopía Electrónica de Facultad de Ciencias, Universidad de la República, Montevideo, Uruguay d Institute for Research in Pharmaceutical and Medications, Universidade Federal da Paraíba, João Pessoa, Paraíba, Brazil e Centro de Cardiologia Experimental, Instituto de Cardiologia/Fundação Universitária de Cardiologia, Porto Alegre, RS, Brazil f Departamento de Bioquímica, Instituto de Ciências Básicas da Saúde, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil g Departamento de Desarrollo Biotecnológico, Instituto de Higiene, Facultad de Medicina, Universidad de la República (UdelaR), Montevideo, Uruguay article info abstract Article history: Vaccine adjuvants are compounds that enhance/prolong the immune response to a co-administered anti- Received 19 May 2020 gen. Saponins have been widely used as adjuvants for many years in several vaccines – especially for Received in revised form 13 November 2020 intracellular pathogens – including the recent and somewhat revolutionary malaria and shingles vac- Accepted 1 December 2020 cines. -
Modelo De La Distribución Espacial De Quillaja Brasiliensis (A. St-Hil. & Tul.)
Boletín del Museo Nacional de Historia Natural, Chile, 66(2): 297-308 (2017) MODELO DE LA DISTRIBUCIÓN ESPACIAL DE QUILLAJA BRASILIENSIS (A. ST-HIL. & TUL.) MART. EN EL SUR DE BRASIL Y LA HISTORIA DE LA DISPERSIÓN DEL GÉNERO QUILLAJA (QUILLAJACEAE) EN AMÉRICA DEL SUR Luciano Moura de Mello1 y Alexandra Alves Cantos2 1 Instituto Federal de Educação, Ciência e Tecnologia Sul-Riograndense (IFSul). Av. Paul Harris, 410, Centro, Sant’Ana do Livramento, RS, CEP 97574-360, Rio Grande do Sul, Brasil; [email protected] 2 Colégio Militar de Santa Maria, Santa Maria, Rio Grande do Sul, Brasil; [email protected] RESUMEN Quillaja brasiliensis (St. A.-Hil. & Tul.) Mart. es un árbol de ambiente templado, existente en el sur de Brasil, Uruguay, Argentina y Paraguay. Con gran contenido de saponina; tiene propiedades relevantes para la industria, tal como Quillaja saponaria, que se distribuye naturalmente en la región central de Chile. El objetivo de este trabajo es explorar la predicción de áreas con condiciones ambientales disponibles para la presencia de Q. brasiliensis usando un algoritmo de máxima entropía y hacer consideraciones acerca de la historia de la distribución de Q. brasiliensis y Q. saponaria en América del Sur. Los resultados demuestran que las especies de Quillaja son vicariantes climáticas que tuvieron su diferenciación iniciada entre el Mioceno y el Plioceno entre 23-5 millones de años, acompañando los movimientos que diferenciaron a Myrceugenia y otras especies de clima templado, compartiendo con estas especies una historia de migraciones y a través de los cambios ambientales ocurridos durante el Cenozoico reciente. Palabras-clave: algoritmo, jabón-de-soldado, Maxent RESUMO Modelo de Distribuição Espacial de Quillaja brasiliensis (A. -
2 ANGIOSPERM PHYLOGENY GROUP (APG) SYSTEM History Of
ANGIOSPERM PHYLOGENY GROUP (APG) SYSTEM The Angiosperm Phylogeny Group, or APG, refers to an informal international group of systematic botanists who came together to try to establish a consensus view of the taxonomy of flowering plants (angiosperms) that would reflect new knowledge about their relationships based upon phylogenetic studies. As of 2010, three incremental versions of a classification system have resulted from this collaboration (published in 1998, 2003 and 2009). An important motivation for the group was what they viewed as deficiencies in prior angiosperm classifications, which were not based on monophyletic groups (i.e. groups consisting of all the descendants of a common ancestor). APG publications are increasingly influential, with a number of major herbaria changing the arrangement of their collections to match the latest APG system. Angiosperm classification and the APG Until detailed genetic evidence became available, the classification of flowering plants (also known as angiosperms, Angiospermae, Anthophyta or Magnoliophyta) was based on their morphology (particularly that of the flower) and their biochemistry (what kinds of chemical compound they contained or produced). Classification systems were typically produced by an individual botanist or by a small group. The result was a large number of such systems (see List of systems of plant taxonomy). Different systems and their updates tended to be favoured in different countries; e.g. the Engler system in continental Europe; the Bentham & Hooker system in Britain (particularly influential because it was used by Kew); the Takhtajan system in the former Soviet Union and countries within its sphere of influence; and the Cronquist system in the United States. -
Vicia Cracca L
Vicia cracca L. Common Names: Tufted Vetch, Bird Vetch, Cow Vetch, Canada pea Etymology: Vicia is Latin for the common name “Vetch”. Cracca is Latin for any type of pulse or legume (2). Botanical synonyms (18): Ervum cracca (L.) Trautv., Vicia hiteropus Freyn, Vicia lilacina Ledeb. Vicia macrophylla B. Fedtsch FAMILY: Fabaceae (the Pea family) Quick Notable Features: ¬ Leaves terminated by a split tendril ¬ Has a single-sided, dense raceme of purple legume flowers ¬ Ballistic seed dispersal Plant Height: V. cracca can grow up to 2m long and 1 meter in height (1,3). Subspecies/varieties recognized: (3,4,18) Vicia cracca subsp. atroviolacea (Bornm.) P.H. Davis, Vicia cracca var.canescens (Maxim.) Franch. & Sav., Vicia cracca subsp. cracca, Vicia cracca var. cracca, Vicia cracca subsp. galloprovincinalis Asch. & Graebn., Vicia cracca subsp. Gerardii (W.D.J. Koch) Briq., Vicia cracca var. gerardii W.D.J. Koch, Vicia cracca var. grossheimii Radti, Vicia cracca subsp. imbricata Rouy, Vicia cracca ssp. incana (Gouan) Rouy , Vicia cracca var. lilacina (Ledeb.) Krylov, Vicia cracca subsp. oreophila (Zertova) Á. Löve & D. Löve, Vicia cracca ssp. stenophylla (Velen.) P.H. Davis, Vicia cracca var. tenuifolia (Roth) G. Beck, Vicia cracca subsp. tenuifolia Gaudin, Vicia cracca subsp. vulgaris Schinz & R. Keller Most Likely Confused with: Other legumes in the same genus such as Vicia americana, V. carolina, V. tetrasperma, and V. villosa. Other species in the Fabaceae possibly confused are Amphicarpaea bracteata and Apios americana, Desmodium rotundifolium. Lathyrus japonicus, L. latifolius, L. ochroleucus, L. palustris, L. pratensis, L. sylvestris, L. tuberosus, and L. venosus, Phaseolus polystachios, P. -
Evolution of Secondary Metabolites in Legumes (Fabaceae)
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector South African Journal of Botany 89 (2013) 164–175 Contents lists available at ScienceDirect South African Journal of Botany journal homepage: www.elsevier.com/locate/sajb Evolution of secondary metabolites in legumes (Fabaceae) M. Wink ⁎ Heidelberg University, Institute of Pharmacy and Molecular Biotechnology, INF 364, D-69120 Heidelberg, Germany article info abstract Available online 11 July 2013 Legumes produce a high diversity of secondary metabolites which serve as defence compounds against herbi- vores and microbes, but also as signal compounds to attract pollinating and fruit-dispersing animals. As Edited by B-E Van Wyk nitrogen-fixing organisms, legumes produce more nitrogen containing secondary metabolites than other plant families. Compounds with nitrogen include alkaloids and amines (quinolizidine, pyrrolizidine, indolizidine, piper- Keywords: idine, pyridine, pyrrolidine, simple indole, Erythrina, simple isoquinoline, and imidazole alkaloids; polyamines, Horizontal gene transfer phenylethylamine, tyramine, and tryptamine derivatives), non-protein amino acids (NPAA), cyanogenic gluco- Evolution of secondary metabolisms Molecular phylogeny sides, and peptides (lectins, trypsin inhibitors, antimicrobial peptides, cyclotides). Secondary metabolites without fl fl Chemotaxonomy nitrogen are phenolics (phenylpropanoids, avonoids, iso avones, catechins, anthocyanins, tannins, lignans, cou- Function of secondary metabolites marins and furanocoumarins), polyketides (anthraquinones), and terpenoids (especially triterpenoid, steroidal Fabaceae saponins, tetraterpenes). While some secondary metabolites have a wide distribution (flavonoids, triterpenes, Leguminosae pinitol), however, others occur in a limited number of taxa. The distributions of secondary metabolites with an irregular occurrence are mapped on a molecular phylogeny of the Fabaceae, reconstructed from a combined data set of nucleotide sequences from rbcL, matK and ITS genes. -
Exploring the Phylogeny of Rosids with a Five-Locus Supermatrix from Genbank
bioRxiv preprint doi: https://doi.org/10.1101/694950; this version posted July 8, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Exploring the phylogeny of rosids with a five-locus supermatrix from GenBank 2 Miao Sun1, 2, 3*, Ryan A. Folk1, Matthew A. Gitzendanner2, 6, Stephen A. Smith4, Charlotte 3 Germain-Aubrey1, Robert P. Guralnick1, 6, Pamela S. Soltis1, 5, 6, Douglas E. Soltis1, 2, 5, 6, 4 Zhiduan Chen3* 5 6 1. Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA 7 2. Department of Biology, University of Florida, Gainesville, FL 32611, USA 8 3. State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, the 9 Chinese Academy of Sciences, Beijing 100093, China 10 4. Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 11 48109, USA 12 5. Genetics Institute, University of Florida, Gainesville, FL 32608, USA 13 6. Biodiversity Institute, University of Florida, Gainesville, FL 32611, USA 14 15 *Corresponding authors: 16 Miao Sun: [email protected] 17 Zhiduan Chen: [email protected] 18 1 bioRxiv preprint doi: https://doi.org/10.1101/694950; this version posted July 8, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. -
Patterns of Composition, Richness and Phylogenetic Diversity of Woody
Gayana Bot. 74(1): 57-72, 2017 ISSN 0016-5301 Original Article Patterns of composition, richness and phylogenetic diversity of woody plant communities of Quillaja saponaria Molina (Quillajaceae) in the Chilean sclerophyllous forest Patrones de composición, riqueza y diversidad filogenética de las comunidades de plantas leñosas de Quillaja saponaria Molina (Quillajaceae) en el bosque esclerófilo de Chile LUIS LETELIER1,2*, ALY VALDERRAMA2, ALEXANDRA STOLL3, ROLANDO GARCÍA-GONZÁLES4 & ANTONIO GONZÁLEZ-RODRÍGUEZ1 1Instituto de Investigaciones en Ecosistemas y Sustentabilidad, Universidad Nacional Autónoma de México, Antigua Carretera a Pátzcuaro Nº 8701, Col. Ex -Hacienda de San José de la Huerta, Morelia, CP 58190, México. 2Universidad Bernardo O`Higgins, Centro de Investigación en Recursos Naturales y Sustentabilidad, Avenida Viel 1497, Santiago, Chile. 3Centro de Estudios Avanzados en Zonas Áridas, Campus Andrés Bello, Universidad de La Serena, La Serena, Chile. 4Facultad de Ciencias Agrarias y Forestales, Universidad Católica del Maule, Avenida San Miguel Nº 3605, Casilla 617, Talca, Chile. *[email protected] ABSTRACT Sclerophyllous forest is among the most representative types of woody plant communities in central Chile where Quillaja saponaria is considered to be one of the most important species. In this study, we analysed the main factors that explain the geographical patterns of variation in composition, richness and phylogenetic diversity of woody plant communities in the Chilean sclerophyllous forest where Quillaja saponaria is present. Vegetation surveys were performed for trees and shrubs in thirty-nine sites from 30° to 38° of latitude South in the Mediterranean biome of Chile. Composition, richness, alfa diversity and phylogenetic diversity metrics of the communities were calculated and associated with spatial (latitude, longitude and altitude), climate (annual mean temperature, annual precipitation, aridity), and disturbance variables (type of adjacent vegetation matrix) using multiple regression models. -
Angiosperm Phylogeny Group (APG) System
Angiosperm Phylogeny Group (APG) system The Angiosperm Phylogeny Group, or APG, refers to an informal international group of systematic botanists who came together to try to establish a consensus view of the taxonomy of flowering plants (angiosperms) that would reflect new knowledge about their relationships based upon phylogenetic studies. As of 2010, three incremental versions of a classification system have resulted from this collaboration (published in 1998, 2003 and 2009). An important motivation for the group was what they viewed as deficiencies in prior angiosperm classifications, which were not based on monophyletic groups (i.e. groups consisting of all the descendants of a common ancestor). APG publications are increasingly influential, with a number of major herbaria changing the arrangement of their collections to match the latest APG system. Angiosperm classification and the APG Until detailed genetic evidence became available, the classification of flowering plants (also known as angiosperms, Angiospermae , Anthophyta or Magnoliophyta ) was based on their morphology (particularly that of the flower) and their biochemistry (what kinds of chemical compound they contained or produced). Classification systems were typically produced by an individual botanist or by a small group. The result was a large number of such systems (see List of systems of plant taxonomy). Different systems and their updates tended to be favoured in different countries; e.g. the Engler system in continental Europe; the Bentham & Hooker system in Britain (particularly influential because it was used by Kew); the Takhtajan system in the former Soviet Union and countries within its sphere of influence; and the Cronquist system in the United States. -
The Families and Genera of Vascular Plants
THE FAMILIES AND GENERA OF VASCULAR PLANTS Edited by K. Kubitzki Volumes published in this series Volume I Pteridophytes and Gymnosperms Edited by K.U. Kramer and P.S. Green (1990) Date of publication: 28.9.1990 Volume II Flowering Plants. Dicotyledons. Magnoliid, Hamamelid and Caryophyllid Families Edited by K. Kubitzki, J.G. Rohwer, and V. Bittrich (1993) Date of publication: 28.7.1993 Volume III Flowering Plants. Monocotyledons: Lilianae (except Orchidaceae) Edited by K. Kubitzki (1998) Date of publication: 27.8.1998 Volume IV Flowering Plants. Monocotyledons: Alismatanae and Commelinanae (except Gramineae) Edited by K. Kubitzki (1998) Date of publication: 27.8.1998 Volume V Flowering Plants. Dicotyledons: Malvales, Capparales and Non-betalain Caryophyllales Edited by K. Kubitzki and C. Bayer (2003) Date of publication: 12.9.2002 Volume VI Flowering Plants. Dicotyledons: Celastrales, Oxalidales, Rosales, Cornales, Ericales Edited by K. Kubitzki (2004) Date of publication: 21.1.2004 Volume VII Flowering Plants. Dicotyledons: Lamiales (except Acanthaceae including Avicenniaceae) Edited by J.W. Kadereit (2004) Date of publication: 13.4.2004 Volume VIII Flowering Plants. Eudicots: Asterales Edited by J.W. Kadereit and C. Jeffrey (2007) Volume IX Flowering Plants. Eudicots: Berberidopsidales, Buxales, Crossosomatales, Fabales p.p., Geraniales, Gunnerales, Myrtales p.p., Proteales, Saxifragales, Vitales, Zygophyllales, Clusiaceae Alliance, Passifloraceae Alliance, Dilleniaceae, Huaceae, Picramniaceae, Sabiaceae Edited by K. Kubitzki (2007) The Families and Genera of Vascular Plants Edited by K. Kubitzki Flowering Plants · Eudicots IX Berberidopsidales, Buxales, Crossosomatales, Fabales p.p., Geraniales, Gunnerales, Myrtales p.p., Proteales, Saxifragales, Vitales, Zygophyllales, Clusiaceae Alliance, Passifloraceae Alliance, Dilleniaceae, Huaceae, Picramniaceae, Sabiaceae Volume Editor : K.