Molecular Architecture of Annelid Nerve Cord Supports Common Origin of Nervous System Centralization in Bilateria
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Six3 Demarcates the Anterior-Most Developing Brain Region In
Steinmetz et al. EvoDevo 2010, 1:14 http://www.evodevojournal.com/content/1/1/14 RESEARCH Open Access Six3 demarcates the anterior-most developing brain region in bilaterian animals Patrick RH Steinmetz1,6†, Rolf Urbach2†, Nico Posnien3,7, Joakim Eriksson4,8, Roman P Kostyuchenko5, Carlo Brena4, Keren Guy1, Michael Akam4*, Gregor Bucher3*, Detlev Arendt1* Abstract Background: The heads of annelids (earthworms, polychaetes, and others) and arthropods (insects, myriapods, spiders, and others) and the arthropod-related onychophorans (velvet worms) show similar brain architecture and for this reason have long been considered homologous. However, this view is challenged by the ‘new phylogeny’ placing arthropods and annelids into distinct superphyla, Ecdysozoa and Lophotrochozoa, together with many other phyla lacking elaborate heads or brains. To compare the organisation of annelid and arthropod heads and brains at the molecular level, we investigated head regionalisation genes in various groups. Regionalisation genes subdivide developing animals into molecular regions and can be used to align head regions between remote animal phyla. Results: We find that in the marine annelid Platynereis dumerilii, expression of the homeobox gene six3 defines the apical region of the larval body, peripherally overlapping the equatorial otx+ expression. The six3+ and otx+ regions thus define the developing head in anterior-to-posterior sequence. In another annelid, the earthworm Pristina, as well as in the onychophoran Euperipatoides, the centipede Strigamia and the insects Tribolium and Drosophila,asix3/optix+ region likewise demarcates the tip of the developing animal, followed by a more posterior otx/otd+ region. Identification of six3+ head neuroectoderm in Drosophila reveals that this region gives rise to median neurosecretory brain parts, as is also the case in annelids. -
A Transcriptional Blueprint for a Spiral-Cleaving Embryo Hsien-Chao Chou1,2, Margaret M
Chou et al. BMC Genomics (2016) 17:552 DOI 10.1186/s12864-016-2860-6 RESEARCH ARTICLE Open Access A transcriptional blueprint for a spiral-cleaving embryo Hsien-Chao Chou1,2, Margaret M. Pruitt1,3, Benjamin R. Bastin1 and Stephan Q. Schneider1* Abstract Background: The spiral cleavage mode of early development is utilized in over one-third of all animal phyla and generates embryonic cells of different size, position, and fate through a conserved set of stereotypic and invariant asymmetric cell divisions. Despite the widespread use of spiral cleavage, regulatory and molecular features for any spiral-cleaving embryo are largely uncharted. To addressthisgapweuseRNA-sequencingonthespiralian model Platynereis dumerilii to capture and quantify the first complete genome-wide transcriptional landscape of early spiral cleavage. Results: RNA-sequencing datasets from seven stages in early Platynereis development, from the zygote to the protrochophore, are described here including the de novo assembly and annotation of ~17,200 Platynereis genes. Depth and quality of the RNA-sequencing datasets allow the identification of the temporal onset and level of transcription for each annotated gene, even if the expression is restricted to a single cell. Over 4000 transcripts are maternally contributed and cleared by the end of the early spiral cleavage phase. Small early waves of zygotic expression are followed by major waves of thousands of genes, demarcating the maternal to zygotic transition shortly after the completion of spiral cleavages in this annelid species. Conclusions: Our comprehensive stage-specific transcriptional analysis of early embryonic stages in Platynereis elucidates the regulatory genome during early spiral embryogenesis and defines the maternal to zygotic transition in Platynereis embryos. -
No 158, December 2018
FROGCALL No 158, December 2018 THE FROG AND TADPOLE STUDY GROUP NSW Inc. Facebook: https://www.facebook.com/groups/FATSNSW/ Email: [email protected] Frogwatch Helpline 0419 249 728 Website: www.fats.org.au ABN: 34 282 154 794 MEETING FORMAT President’s Page Friday 7th December 2018 Arthur White 6.30 pm: Lost frogs: 2 Green Tree Frogs Litoria caerulea, seeking forever homes. Priority to new pet frog owners. Please bring your membership card and cash $50 donation. Sorry, we don’t have EFTPOS. Your current NSW NPWS amphibian licence must be sighted on the night. Rescued and adopted frogs can 2017 –2018 was another strong year for FATS. FATS is one of the few conservation groups that is man- never be released. aging to maintain its membership numbers and still be active in the community. Other societies have seen numbers fall mainly because the general public seems to prefer to look up information on the web 7.00 pm: Welcome and announcements. and not to attend meetings or seek information firsthand. It is getting harder for FATS to get people to 7.45 pm: The main speaker is John Cann, talking about turtles. be active in frog conservation but we will continue to do so for as long as we can. Last year we made the decision to start sending out four issues of FrogCall per year electronically. 8.30 pm: Frog-O-Graphic Competition Prizes Awarded. This saves FATS a lot of postage fees. Our members have informed us that when FrogCall arrives as an email attachment it is often not read, or simply ignored. -
Annelids, Platynereis Dumerilii In: Boutet, A
Annelids, Platynereis dumerilii In: Boutet, A. & B. Schierwater, eds. Handbook of Established and Emerging Marine Model Organisms in Experimental Biology, CRC Press Quentin Schenkelaars, Eve Gazave To cite this version: Quentin Schenkelaars, Eve Gazave. Annelids, Platynereis dumerilii In: Boutet, A. & B. Schierwater, eds. Handbook of Established and Emerging Marine Model Organisms in Experimental Biology, CRC Press. In press. hal-03153821 HAL Id: hal-03153821 https://hal.archives-ouvertes.fr/hal-03153821 Preprint submitted on 26 Feb 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Annelids, Platynereis dumerilii Quentin Schenkelaars, Eve Gazave 13.1 History of the model 13.2 Geographical location 13.3 Life cycle 13.4 Anatomy 13.4.1 External anatomy of Platynereis dumerilii juvenile (atoke) worms 13.4.2 Internal anatomy of Platynereis dumerilii juvenile (atoke) worms 13.4.2.1 Nervous system: 13.4.2.2 Circulatory system 13.4.2.3 Musculature 13.4.2.4 Excretory system 13.4.2.5 Digestive system 13.4.3 External and internal anatomy of Platynereis dumerilii -
Whole-Head Recording of Chemosensory Activity in the Marine Annelid Platynereis Dumerilii
bioRxiv preprint doi: https://doi.org/10.1101/391920; this version posted August 14, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Whole-head recording of chemosensory activity in the marine annelid Platynereis dumerilii Thomas Chartier1, Joran Deschamps2, Wiebke Dürichen1, Gáspár Jékely3, Detlev Arendt1 1 Developmental Biology Unit, European Molecular Biology Laboratory, Meyerhofstraße 1, 69117 Heidelberg, Germany 2 Cell Biology & Biophysics Unit, European Molecular Biology Laboratory, Meyerhofstraße 1, 69117 Heidelberg, Germany 3 Max Planck Institute for Developmental Biology, Spemannstraße 35, 72076 Tübingen, Germany Authors for correspondence : Detlev Arendt : [email protected] Thomas Chartier : [email protected] Submitted cover image: calcium response of the nuchal organs to a chemical stimulant in a 6-days-old Platynereis juvenile bioRxiv preprint doi: https://doi.org/10.1101/391920; this version posted August 14, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Abstract Chemical detection is key to various behaviours in both marine and terrestrial animals. Marine species, though highly diverse, have been underrepresented so far in studies on chemosensory systems, and our knowledge mostly concerns the detection of airborne cues. A broader comparative approach is therefore desirable. Marine annelid worms with their rich behavioural repertoire represent attractive models for chemosensory studies. -
The Segmental Pattern of Otx, Gbx, and Hox Genes in the Annelid Platynereis Dumerilii
EVOLUTION & DEVELOPMENT 13:1, 72–79 (2011) DOI: 10.1111/j.1525-142X.2010.00457.x The segmental pattern of otx, gbx, and Hox genes in the annelid Platynereis dumerilii Patrick R. H. Steinmetz,a,1 Roman P. Kostyuchenko,b Antje Fischer,a and Detlev Arendta,Ã aDevelopmental Biology Unit, European Molecular Biology Laboratory, Meyerhofstrasse 1, 69012 Heidelberg, Germany bDepartment of Embryology, State University of St. Petersburg, Universitetskaya nab. 7/9, 199034 St. Petersburg, Russia ÃAuthor for correspondence (email: [email protected]) 1Present address: Department for Molecular Evolution and Development, University of Vienna, Althanstrasse 14, 1090 Vienna, Austria. SUMMARY Annelids and arthropods, despite their distinct engrailed-expressingcells.Thefirstsegmentisa‘‘cryptic’’ classification as Lophotrochozoa and Ecdysozoa, present a segment that lacks chaetae and parapodia. This and the morphologically similar, segmented body plan. To elucidate the subsequent three chaetigerous larval segments harbor the evolution of segmentation and, ultimately, to align segments anterior expression boundary of gbx, hox1, hox4,andlox5 across remote phyla, we undertook a refined expression genes, respectively. This molecular segmental topography analysis to precisely register the expression of conserved matches the segmental pattern of otx, gbx,andHoxgene regionalization genes with morphological boundaries and expression in arthropods. Our data thus support the view that segmental units in the marine annelid Platynereis dumerilii. an ancestral ground pattern of segmental identities existed in We find that Pdu-otx defines a brain region anterior to the first the trunk of the last common protostome ancestor that was lost discernable segmental entity that is delineated by a stripe of or modified in protostomes lacking overt segmentation. -
The Evolution of Metazoan Gata Transcription Factors
THE EVOLUTION OF METAZOAN GATA TRANSCRIPTION FACTORS by WILLIAM JOSEPH GILLIS A DISSERTATION Presented to the Department ofBiology and the Graduate School ofthe University of Oregon in partial fulfillment ofthe requirements for the degree of Doctor ofPhilosophy September 2008 11 University of Oregon Graduate School Confirmation of Approval and Acceptance ofDissertation prepared by: William Gillis Title: "The evolution ofmetazoan GATA transcription factors." This dissertation has been accepted and approved in partial fulfillment ofthe requirements for the Doctor ofPhilosophy degree in the Department ofBiology by: Eric Johnson, Chairperson, Biology Bruce Bowerman, Advisor, Biology John Postlethwait, Member, Biology Joseph Thornton, Member, Biology Stephan Schneider, Member, Institute ofMolecular Biology John Conery, Outside Member, Computer & Information Science and Richard Linton, Vice President for Research and Graduate Studies/Dean ofthe Graduate School for the University of Oregon. September 6, 2008 Original approval signatures are on file with the Graduate School and the University of Oregon Libraries. III © 2008 William J Gillis iv An Abstract ofthe Dissertation of William J. Gillis for the degree of Doctor of Phil osophy in the Department of Biology to be taken September 2008 Title: THE EVOLUTION OF METAZOAN GATA TRANSCRIPTION FACTORS Approved: Dr. Bruce Bowerman This thesis explores the origin and evolution ofanimal germ layers via evolutionary-developmental analyses ofthe GATA family oftranscription factors. GATA factors identified via a conserved dual zinc-finger domain direct early germ layer specification across a wide variety of animals. However, most ofthese developmental roles are characterized in invertebrate models, whose rapidly evolved sequences make it difficult to reconstruct evolutionary relationships. This study reconstructs the stepwise evolution ofmetazoan GATA transcription factors, defming homologous developmental roles based upon clear orthology assignments. -
Evolutionary Crossroads in Developmental Biology: Annelids David E
PRIMER SERIES PRIMER 2643 Development 139, 2643-2653 (2012) doi:10.1242/dev.074724 © 2012. Published by The Company of Biologists Ltd Evolutionary crossroads in developmental biology: annelids David E. K. Ferrier* Summary whole to allow more robust comparisons with other phyla, as well Annelids (the segmented worms) have a long history in studies as for understanding the evolution of diversity. Much of annelid of animal developmental biology, particularly with regards to evolutionary developmental biology research, although by no their cleavage patterns during early development and their means all of it, has tended to concentrate on three particular taxa: neurobiology. With the relatively recent reorganisation of the the polychaete (see Glossary, Box 1) Platynereis dumerilii; the phylogeny of the animal kingdom, and the distinction of the polychaete Capitella teleta (previously known as Capitella sp.); super-phyla Ecdysozoa and Lophotrochozoa, an extra stimulus and the oligochaete (see Glossary, Box 1) leeches, such as for studying this phylum has arisen. As one of the major phyla Helobdella. Even within this small selection of annelids, a good within Lophotrochozoa, Annelida are playing an important role range of the diversity in annelid biology is evident. Both in deducing the developmental biology of the last common polychaetes are marine, whereas Helobdella is a freshwater ancestor of the protostomes and deuterostomes, an animal from inhabitant. The polychaetes P. dumerilii and C. teleta are indirect which >98% of all described animal species evolved. developers (see Glossary, Box 1), with a larval stage followed by metamorphosis into the adult form, whereas Helobdella is a direct Key words: Annelida, Polychaetes, Segmentation, Regeneration, developer (see Glossary, Box 1), with the embryo developing into Central nervous system the worm form without passing through a swimming larval stage. -
Whole-Body Integration of Gene Expression and Single-Cell Morphology
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.26.961037; this version posted February 27, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Whole-body integration of gene expression and single-cell morphology AUTHORS AND CONTACT INFORMATION Hernando M. Vergara#,1,2, Constantin Pape#,3,4, Kimberly I. Meechan#,3, Valentyna Zinchenko#,3, Christel Genoud#,5, Adrian A. Wanner#,5,6, Benjamin Titze5, Rachel M. Templin3, Paola Y. Bertucci1, Oleg Simakov7, Pedro Machado8, Emily L. Savage1, Yannick Schwab*,9, Rainer W. Friedrich*,5, Anna Kreshuk*,3, Christian Tischer*,10, Detlev Arendt*,1 # These authors contributed equally * Authors for correspondence 1Developmental Biology Unit, European Molecular Biology Laboratory (EMBL), Meyerhofstrasse 1, Heidelberg, 69117, Germany 2Sainsbury Wellcome Centre for Neural Circuits and Behaviour, Howland Street 25, London, W1T 4JG, UK 3Cell Biology and Biophysics Unit, European Molecular Biology Laboratory (EMBL), Meyerhofstrasse 1, Heidelberg, 69117, Germany 4Heidelberg Collaboratory for Image Processing, Institut für Wissenschaftliches Rechnen, Ruprecht Karls Universität Heidelberg, Heidelberg 5Friedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, Basel, 4058, Switzerland 6Princeton Neuroscience Institute, Princeton University, Washington Rd, Princeton, NJ, 08544, USA 7Department of Neuroscience -
Programa De Manejo Del Parque Nacional Arrecife De Puerto Morelos
PROGRAMADEMANEJO DELPARQUENACIONAL ARRECIFEDE PUERTOMORELOS MÉXICO Programa de Manejo del Parque Nacional Arrecife de Puerto Morelos Julia Carabias Lillo Secretaria de Medio Ambiente, Recursos Naturales y Pesca Enrique Provencio Presidente del Instituto Nacional de Ecología Javier de la Maza Elvira Jefe de la Unidad Coordinadora de Áreas Naturales Protegidas David Gutiérrez Carbonell Director General Adjunto de Conservación y Manejo de Áreas Naturales Protegidas Mario Gómez Cruz Director General Adjunto de Planeación y Promoción de Áreas Naturales Protegidas Fotografías: Claudio Contreras Koob, Eric Jordan Dahlgren y Juan Carlos Huitrón © 1a edición: mayo de 2000 Instituto Nacional de Ecología Av. Revolución 1425, Col. Tlacopac, México, D.F. El cuidado de esta edición estuvo a cargo de la Dirección de Publicaciones de la Dirección Ejecutiva de Participación Social, Enlace y Comunicación, INE. Impreso y hecho en México 2 Instituto Nacional de Ecología PROGRAMADEMANEJO DELPARQUENACIONAL ARRECIFEDE PUERTOMORELOS MÉXICO INSTITUTONACIONALDEECOLOGÍA COMUNIDADDEPUERTOMORELOS,QUINTANAROO 3 Programa de Manejo del Parque Nacional Arrecife de Puerto Morelos 4 Instituto Nacional de Ecología Presentación El Decreto del Parque Nacional Arrecife de Puerto Morelos y la integración y publica- ción del presente Programa de Manejo, son dos grandes logros que agradecemos a la Comunidad de Puerto Morelos, comprometida con la conservación y uso racional de su patrimonio natural, con los espacios naturales de los que depende su recreación y esparcimiento, con -
Are Phylogeographic Patterns Related to Exposure to Ocean Acidifcation?
Mar Biol (2017) 164:199 DOI 10.1007/s00227-017-3222-x ORIGINAL PAPER The sibling polychaetes Platynereis dumerilii and Platynereis massiliensis in the Mediterranean Sea: are phylogeographic patterns related to exposure to ocean acidifcation? Janine Wäge1,2 · Giulia Valvassori3 · Jörg D. Hardege1 · Anja Schulze4 · Maria Cristina Gambi3 Received: 16 December 2016 / Accepted: 23 August 2017 © Springer-Verlag GmbH Germany 2017 Abstract High pCO2 environments, such as volcanic car- Ischia and Vulcano islands (Italy, Tyrrhenian Sea), and in bon dioxide (CO2) vents, which mimic predicted near-future various areas with ambient pH conditions, where they rep- scenarios of ocean acidifcation (OA), ofer an opportunity resent one of the dominant genera. Phylogeographic analyses to examine efects of low pH conditions on marine biodi- were integrated with reproductive biology and life-history versity and adaptation/acclimatization of marine organisms observations on some selected populations thriving in the to such conditions. Based on previous feld studies in these vent areas. This approach revealed the presence of four systems, it is predicted that the stress owing to increasing distinct Platynereis clades. Whereas two clades primarily CO2 concentrations favours the colonization by invertebrate inhabit CO2 vents and are presumably all brooders, the other species with a brooding habit. The goal of this study was to two clades dominate the non-acidifed sites and appear to investigate the relative occurrence of the two sibling spe- be epitokous free spawners. We postulate that one of the cies Platynereis dumerilii (Audouin & Milne-Edwards, brooding, vent-inhabiting clades represents P. massiliensis 1834) (free spawner) and Platynereis massiliensis (Moquin- and one of the free spawning, non-vent-inhabiting clades Tandon, 1869) (egg brooder) in two shallow CO 2 vents of represents P. -
Annelid Platynereis Dumerilii
Tools for Gene-Regulatory Analyses in the Marine Annelid Platynereis dumerilii Benjamin Backfisch1,2., Vitaly V. Kozin1,3., Stephan Kirchmaier1¤, Kristin Tessmar-Raible1,2, Florian Raible1,2* 1 Max Ferdinand Perutz Laboratories (MFPL), University of Vienna, Vienna, Austria, 2 Research Platform ‘‘Marine Rhythms of Life,’’ University of Vienna, Vienna, Austria, 3 Department of Embryology, St. Petersburg State University, St. Petersburg, Russia Abstract The advent of high-throughput sequencing technology facilitates the exploration of a variety of reference species outside the few established molecular genetic model systems. Bioinformatic and gene expression analyses provide new ways for comparative analyses between species, for instance, in the field of evolution and development. Despite these advances, a critical bottleneck for the exploration of new model species remains the establishment of functional tools, such as the ability to experimentally express genes in specific cells of an organism. We recently established a first transgenic strain of the annelid Platynereis, using a Tc1/mariner-type Mos1 transposon vector. Here, we compare Mos1 with Tol2, a member of the hAT family of transposons. In Platynereis, Tol2-based constructs showed a higher frequency of nuclear genome insertion and sustained gene expression in the G0 generation. However, in contrast to Mos1-mediated transgenes, Tol2-mediated insertions failed to retain fluorescence in the G1 generation, suggesting a germ line-based silencing mechanism. Furthermore, we present three novel expression constructs that were generated by a simple fusion-PCR approach and allow either ubiquitous or cell-specific expression of a reporter gene. Our study indicates the versatility of Tol2 for transient transgenesis, and provides a template for transgenesis work in other emerging reference species.