Emerging Functions for Cell Wall Polysaccharides Accumulated During Eudicot Seed Development
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Pectin Structure and Biosynthesis Debra Mohnen
Available online at www.sciencedirect.com Pectin structure and biosynthesis Debra Mohnen Pectin is structurally and functionally the most complex pteridophytes, bryophytes and Chara, a charophycean polysaccharide in plant cell walls. Pectin has functions in plant algae believed to be the closest extant relative of land growth, morphology, development, and plant defense and also plants [3]. The correlation of increased amounts of the serves as a gelling and stabilizing polymer in diverse food and pectin RG-II in vascular plants, and its appearance as specialty products and has positive effects on human health plants adapted to upright growth on land and developed and multiple biomedical uses. Pectin is a family of galacturonic lignified secondary walls [4], suggests that pectin has acid-rich polysaccharides including homogalacturonan, fundamental roles in both primary and secondary wall rhamnogalacturonan I, and the substituted galacturonans structure and function. An understanding of pectin struc- rhamnogalacturonan II (RG-II), and xylogalacturonan (XGA). ture and synthesis is crucial to understanding, and poten- Pectin biosynthesis is estimated to require at least 67 tially modifying, wall structure so as to promote efficient transferases including glycosyl-, methyl-, and production of biofuel from recalcitrant plant lignocellu- acetyltransferases. New developments in understanding pectin losic biomass [5,6]. structure, function, and biosynthesis indicate that these polysaccharides have roles in both primary and secondary cell Several reviews on pectin biosynthesis synthesis [2,7,8], walls. Manipulation of pectin synthesis is expected to impact plant wall biosynthesis [9–12], and regulation of cell wall diverse plant agronomical properties including plant biomass synthesis [13,14] have recently been published. -
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Food & Function View Article Online PAPER View Journal | View Issue Chia seed mucilage – a vegan thickener: isolation, tailoring viscoelasticity and rehydration Cite this: Food Funct., 2019, 10, 4854 Linda Brütsch, Fiona J. Stringer, Simon Kuster, Erich J. Windhab and Peter Fischer * Chia seeds and their mucilage gels provide a nutritionally and functionally promising ingredient for the food and pharmaceutical industry. Application and utilization of the gel remain limited due to the tightly adhesion of the mucilage to the seeds, which affects the organoleptic properties, control of concen- tration and structuring possibilities. To exploit the full potential of chia mucilage gels as a functional ingre- dient calls for separation and purification of the gel. Herein, the gel was extracted by centrifugation and characterized rheologically and microscopically to link the viscoelastic properties to the structural pro- perties. Subsequently, the gel was dried employing three different methods for facilitated storage and prolonged shelf life. The dried gels were readily soluble and its viscoelastic properties were fully regener- Creative Commons Attribution 3.0 Unported Licence. ated upon rehydration demonstrating its potential to envisage industrial applications. The viscoelastic chia mucilage demonstrated shear-thinning behavior with complete relaxation upon stress removal. The gel’s Received 26th January 2018, elasticity was enhanced with increasing mucilage concentration resulting in a highly tunable system. The Accepted 13th July 2019 extractable and rehydratable functional chia gel is a viable candidate as additive for the development of DOI: 10.1039/c8fo00173a products requiring specific viscoelastic properties. Addition of the gel enhances the nutritional profile rsc.li/food-function without interfering with the organoleptic properties. -
Mucilage Problem in the Semi-Enclosed Seas: Recent Outbreak in the Sea of Marmara
ISSN: 2148-9173 Vol: Issue:4 December 2021 ,QWHUQDWLRQDO-RXUQDORI(QYLURQPHQWDQG*HRLQIRUPDWLFV ,-(*(2 LVDQLQWHUQDWLRQDO PXOWLGLVFLSOLQDU\SHHUUHYLHZHGRSHQDFFHVVMRXUQDO Mucilage Problem in the Semi-Enclosed Seas: Recent Outbreak in the Sea of Marmara Başak SAVUN-HEKİMOĞLU, Cem GAZİOĞLU &KLHILQ(GLWRU 3URI'U&HP*D]LR÷OX &R(GLWRUV 3URI'U'XUVXQ=DIHUùHNHU3URI'UùLQDVL.D\D 3URI'U$\úHJO7DQÕNDQG$VVLVW3URI'U9RONDQ'HPLU (GLWRULDO&RPPLWWHH December $VVRc3URI'U$EGXOODK$NVX 75 $VVLW3URI'U8÷XU$OJDQFÕ 75 3URI'U%HGUL$OSDU 75 Assoc. Prof. Dr. Aslı Aslan (US), 3URI'U/HYHQW%DW 75 3URI'U3DXO%DWHV 8. øUúDG%D\ÕUKDQ 75 3URI'U%OHQW %D\UDP 75 3URI'U/XLV0%RWDQD (6 3URI'U1XUD\dD÷ODU 75 3URI'U6XNDQWD'DVK ,1 'U6RRILD7 (OLDV 8. 3URI'U$(YUHQ(UJLQDO 75 $VVRF3URI'U&QH\W(UHQR÷OX 75 'U'LHWHU)ULWVFK '( 3URI 'UdL÷GHP*|NVHO 75 3URI'U/HQD+DORXQRYD &= 3URI'U0DQLN.DOXEDUPH ,1 'U+DNDQ.D\D 75 $VVLVW3URI'U6HUNDQ.NUHU 75 $VVRF3URI'U0DJHG0DUJKDQ\ 0< 3URI'U0LFKDHO0HDGRZV =$ 3URI 'U 1HEL\H 0XVDR÷OX 75 3URI 'U 0DVDIXPL 1DNDJDZD -3 3URI 'U +DVDQ g]GHPLU 75 3URI 'U &KU\VV\3RWVLRX *5 3URI'U(URO6DUÕ 75 3URI'U0DULD3DUDGLVR ,7 3URI'U3HWURV3DWLDV *5 3URI'U (OLI6HUWHO 75 3URI'U1NHW6LYUL 75 3URI'U)VXQ%DOÕNùDQOÕ 75 3URI'U8÷XUùDQOÕ 75 'X\JXhONHU 75 3URI'U6H\IHWWLQ7Dú 75 $VVRF3URI'UgPHU6XDW7DúNÕQ TR Assist. Prof. Dr. Tuba Ünsal (TR), Dr. Manousos Valyrakis (UK), 'UøQHVH9DUQD /9 'U3HWUD9LVVHU 1/ 3URI'U6HOPDhQO 75 Assoc. Prof. Dr. Oral Yağcı (TR), 3URI'U0XUDW<DNDU 75 Assoc. Prof. Dr. İ. Noyan Yılmaz (AU); $VVLW3URI'U6LEHO=HNL 75 $EVWUDFWLQJ DQG ,QGH[LQJ 75 ',=,1 '2$- ,QGH[ &RSHUQLFXV 2$-, 6FLHQWLILF ,QGH[LQJ 6HUYLFHV ,QWHUQDWLRQDO 6FLHQWLILF ,QGH[LQJ-RXUQDO)DFWRU*RRJOH6FKRODU8OULFK V3HULRGLFDOV'LUHFWRU\:RUOG&DW'5-,5HVHDUFK%LE62%,$' International Journal of Environment and Geoinformatics 8(4): 402-413 (2021) Review Article Mucilage Problem in the Semi-Enclosed Seas: Recent Outbreak in the Sea of Marmara Başak Savun-Hekimoğlu* , Cem Gazioğlu Institute of Marine Sciences and Management, İstanbul University, İstanbul, Turkey * Corresponding author: B. -
Mucilage in Yellow Mustard (Brassica Hirta) Seeds
Food Structure Volume 5 Number 1 Article 17 1986 Mucilage in Yellow Mustard (Brassica Hirta) Seeds I. R. Siddiqui S. H. Yiu J. D. Jones M. Kalab Follow this and additional works at: https://digitalcommons.usu.edu/foodmicrostructure Part of the Food Science Commons Recommended Citation Siddiqui, I. R.; Yiu, S. H.; Jones, J. D.; and Kalab, M. (1986) "Mucilage in Yellow Mustard (Brassica Hirta) Seeds," Food Structure: Vol. 5 : No. 1 , Article 17. Available at: https://digitalcommons.usu.edu/foodmicrostructure/vol5/iss1/17 This Article is brought to you for free and open access by the Western Dairy Center at DigitalCommons@USU. It has been accepted for inclusion in Food Structure by an authorized administrator of DigitalCommons@USU. For more information, please contact [email protected]. FOOD MICROSTRUCTURE, Vol. 5 (1986), pp. 157-162 0730-54 19/86$ I. 00 •. OS SEM, Inc., AMF O'Hare (Chicago), IL 60666- 0507 U.S.A . MUCILAGE IN YELLOW MUSTARD (BRASSICA H I RT A) SEEDS I. R. Siddiqui. S. H. V!u, J . 0. Jones, and M. Kal.ib Food Resea r ch Cen tre, Research Branch, Agriculture Canada Ottawa, On tario, Canada KlA OC6 Introduction Release of mucJ !age fr011 yellow JDUstard (Brass lea Seeds of the genus Brass i ca arc known to contain hirta, also IOlown as Sinapis alba) seed coats (hulls) varying a.ounts of •ucilage. The 110cf I age Is of particu was studied by optical and scanning electron •icroscopy. lar Importance in -.!stard seeds because it contributes Mi crographs were obtained of the aucilage which had to the consistency of prepared lllllstard (Weber et a l. -
Insights Into the Ph-Dependent, Extracellular Sucrose Utilization and Concomitant Levan Formation by Gluconobacter Albidus TMW 2.1191
Antonie van Leeuwenhoek (2020) 113:863–873 https://doi.org/10.1007/s10482-020-01397-3 (0123456789().,-volV)( 0123456789().,-volV) ORIGINAL PAPER Insights into the pH-dependent, extracellular sucrose utilization and concomitant levan formation by Gluconobacter albidus TMW 2.1191 Frank Jakob . Clara Gebrande . Regina M. Bichler . Rudi F. Vogel Received: 18 December 2019 / Accepted: 20 February 2020 / Published online: 4 March 2020 Ó The Author(s) 2020 Abstract Many bacteria and archaea produce the The glucose release and formation of high molecular polydisperse fructose polymer levan from sucrose weight levans ([ 3.5 kDa) from 0.1 M initial sucrose upon biofilm formation via extracellular levansucrases was comparable between pH * 4.3–5.7 using equal (EC 2.4.1.10). We have investigated levansucrase- amounts of released levansucrase. Hence, this type of release and -activities as well as molecular size of the levansucrase appears to be structurally adapted to levan formed by the acetic acid bacterium Glu- changes in the extracellular pH and to exhibit a similar conobacter albidus TMW 2.1191 at varying environ- total activity over a wide acidic pH range, while it mental pH conditions to obtain insight in the produced higher amounts of larger levan molecules at ecological role of its constitutively expressed levan- higher production pH and sucrose concentrations. sucrase and the produced levan. A buffer system was These findings indicate the physiological adaptation of established enabling the recovery of levansucrase- G. albidus TMW 2.1191 to efficient colonisation of containing supernatants from preincubated cell sus- sucrose-rich habitats via released levansucrases pensions at pH 4.3–pH 5.7. -
The Structure, Function, and Biosynthesis of Plant Cell Wall Pectic Polysaccharides
Carbohydrate Research 344 (2009) 1879–1900 Contents lists available at ScienceDirect Carbohydrate Research journal homepage: www.elsevier.com/locate/carres The structure, function, and biosynthesis of plant cell wall pectic polysaccharides Kerry Hosmer Caffall a, Debra Mohnen a,b,* a University of Georgia, Department of Biochemistry and Molecular Biology and Complex Carbohydrate Research Center, 315 Riverbend Road Athens, GA 30602, United States b DOE BioEnergy Science Center (BESC), 315 Riverbend Road Athens, GA 30602, United States article info abstract Article history: Plant cell walls consist of carbohydrate, protein, and aromatic compounds and are essential to the proper Received 18 November 2008 growth and development of plants. The carbohydrate components make up 90% of the primary wall, Received in revised form 4 May 2009 and are critical to wall function. There is a diversity of polysaccharides that make up the wall and that Accepted 6 May 2009 are classified as one of three types: cellulose, hemicellulose, or pectin. The pectins, which are most abun- Available online 2 June 2009 dant in the plant primary cell walls and the middle lamellae, are a class of molecules defined by the pres- ence of galacturonic acid. The pectic polysaccharides include the galacturonans (homogalacturonan, Keywords: substituted galacturonans, and RG-II) and rhamnogalacturonan-I. Galacturonans have a backbone that Cell wall polysaccharides consists of -1,4-linked galacturonic acid. The identification of glycosyltransferases involved in pectin Galacturonan a Glycosyltransferases synthesis is essential to the study of cell wall function in plant growth and development and for maxi- Homogalacturonan mizing the value and use of plant polysaccharides in industry and human health. -
Polysaccharide Composition of the Mucilage of Azolla Algal Packets
Symbiosis, 24 (1998) 303-314 303 Balaban, Philadelphia/Rehovot Polysaccharide Composition of the Mucilage of Azolla Algal Packets C. FORNil*, A HAEGI2, and M. DEL GALL03 1 Dipartimento di Biologia, Uniuersiia di Roma "Tor Verga ta", Via della Ricerca Scienttica, 00133 Rome, Italy, Fax. +39-6-202-3500, Tel. +39-6-7259-4345; Istituto Sperimentale per la Patologia Vegetale, Via G.C. Bertero 22, 00156 Rome, Italy; and 3Dipartimento di Biologia di Base ed Applicata, Unioersita dell 'Aquila, Via Vetoio, Coppiio, L 'Aquila, Italy Received June 27, 1997; Accepted November 23, 1997 Abstract Algal packet mucilage of different species of Azolla was analysed for their polysaccharide content and composition. The mucilage was composed, as shown by HPLC analyses, of glucose, galactose and fucose, while rhamnose was present only in A. pinnata var. imbricaia, A. caroliniana, A. rubra and A. filiculoides. Treatments of the fern with antibiotics to which Anabaena and/ or bacteria are sensitive, did not change the qualitative composition of polysaccharides, but altered the amount of single monosaccharides. Fucose was the most abundant monosaccharide, both in treated and in untreated plants, suggesting its plant origin. The amount of glucose and galactose in erythromycin treated Azolla decreased, suggesting that these monosaccharides are produced both by Anabaena and by bacteria. Lectin binding was observed microscopically using fluorescein isothiocyanate-labelled lectins. Algal packet polysaccharides of untreated plants had glucose as hapten, which was also revealed on the surface of both Anabaena and bacteria. Galactose was a hapten both of the mucilage and of the bacteria. Hypotheses about the contribution of each component of the symbiosis to the mucilage production are put forward. -
Isolation and Characterization of Agar-Degrading Paenibacillus Spp
Biosci. Biotechnol. Biochem., 67 (5), 1048–1055, 2003 Isolation and Characterization of Agar-degrading Paenibacillus spp. Associated with the Rhizosphere of Spinach Akifumi HOSODA,1 Masao SAKAI,2,† and Shinjiro KANAZAWA2 1Laboratory of Soil Microbiology, Department of Plant Resources, Graduate School of Bioresource and Bioenvironmental Sciences, and 2Laboratory of Soil Microbiology, Department of Plant Resources, Faculty of Agriculture, Kyushu University, 6-10-1 Hakozaki, Higashi-ku, Fukuoka 812-8581, Japan Received November 8, 2002; Accepted January 11, 2003 Agar-degrading bacteria in spinach plant roots culti- which is an alternating polymer of D-galactose and vated in ˆve soils were screened, and four strains of 3,6-anhydro-L-galactose linked by alternating b-(1,4) Paenibacillus sp. were isolated from roots cultivated in and a-(1,3) bonds.12) Two types of agar-degradation three soils. The agar-degrading bacteria accounted for processes have been studied on several agar-degrad- 1.3z to 2.5z of the total bacteria on the roots. In con- ing bacteria. The ˆrst type was identiˆed in studies trast, no agar-degrading colony was detected in any soil on Pseudoalteromonas atlantica ATCC 19292.9,13) (non-rhizosphere soil samples) by the plate dilution P. atlantica hydrolyzes agarose by extracellular method, and thus these agar-degrading bacteria may b-agarase. This enzyme cleaves the b-(1,4) linkage speciˆcally inhabit plant roots. All isolates produced between D-galactopyranose and 3,6-anhydro-L-galac- extracellular agarase, and could grow using agar in the tose to give a series of neoagaro-oligosaccharides. culture medium as the sole carbon source. -
MYB Transcription Factors and Its Regulation in Secondary Cell Wall Formation and Lignin Biosynthesis During Xylem Development
International Journal of Molecular Sciences Review MYB Transcription Factors and Its Regulation in Secondary Cell Wall Formation and Lignin Biosynthesis during Xylem Development Ruixue Xiao 1,2, Chong Zhang 2, Xiaorui Guo 2, Hui Li 1,2 and Hai Lu 1,2,* 1 Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing 100083, China; [email protected] (R.X.); [email protected] (H.L.) 2 College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing 100083, China; [email protected] (C.Z.); [email protected] (X.G.) * Correspondence: [email protected] Abstract: The secondary wall is the main part of wood and is composed of cellulose, xylan, lignin, and small amounts of structural proteins and enzymes. Lignin molecules can interact directly or indirectly with cellulose, xylan and other polysaccharide molecules in the cell wall, increasing the mechanical strength and hydrophobicity of plant cells and tissues and facilitating the long-distance transportation of water in plants. MYBs (v-myb avian myeloblastosis viral oncogene homolog) belong to one of the largest superfamilies of transcription factors, the members of which regulate secondary cell-wall formation by promoting/inhibiting the biosynthesis of lignin, cellulose, and xylan. Among them, MYB46 and MYB83, which comprise the second layer of the main switch of secondary cell-wall biosynthesis, coordinate upstream and downstream secondary wall synthesis-related transcription factors. In addition, MYB transcription factors other than MYB46/83, as well as noncoding RNAs, Citation: Xiao, R.; Zhang, C.; Guo, X.; hormones, and other factors, interact with one another to regulate the biosynthesis of the secondary Li, H.; Lu, H. -
Identification of Nitrogen Fixation Genes in Lactococcus Isolated From
microorganisms Article Identification of Nitrogen Fixation Genes in Lactococcus Isolated from Maize Using Population Genomics and Machine Learning Shawn M. Higdon 1 , Bihua C. Huang 2,3, Alan B. Bennett 1 and Bart C. Weimer 2,3,* 1 Department of Plant Sciences, University of California, Davis, CA 95616, USA; [email protected] (S.M.H.); [email protected] (A.B.B.) 2 Department of Population Health and Reproduction, School of Veterinary Medicine, University of California, Davis, CA 95616, USA; [email protected] 3 100 K Pathogen Genome Project, University of California, Davis, CA 95616, USA * Correspondence: [email protected] Received: 10 November 2020; Accepted: 17 December 2020; Published: 20 December 2020 Abstract: Sierra Mixe maize is a landrace variety from Oaxaca, Mexico, that utilizes nitrogen derived from the atmosphere via an undefined nitrogen fixation mechanism. The diazotrophic microbiota associated with the plant’s mucilaginous aerial root exudate composed of complex carbohydrates was previously identified and characterized by our group where we found 23 lactococci capable of biological nitrogen fixation (BNF) without containing any of the proposed essential genes for this trait (nifHDKENB). To determine the genes in Lactococcus associated with this phenotype, we selected 70 lactococci from the dairy industry that are not known to be diazotrophic to conduct a comparative population genomic analysis. This showed that the diazotrophic lactococcal genomes were distinctly different from the dairy isolates. Examining the pangenome followed by genome-wide association study and machine learning identified genes with the functions needed for BNF in the maize isolates that were absent from the dairy isolates. Many of the putative genes received an ‘unknown’ annotation, which led to the domain analysis of the 135 homologs. -
Microhydrological Niches in Soils: How Mucilage and EPS Alter The
Published June 27, 2019 Original Research Core Ideas Microhydrological Niches in Soils: • Plant mucilage and bacterial How Mucilage and EPS Alter the extracellular polymeric substances (EPS) prevent the breakup of the soil Biophysical Properties of the Rhizosphere liquid phase. • Formation of continuous structures and Other Biological Hotspots buffers soil hydraulic properties. Pascal Benard,* Mohsen Zarebanadkouki, Mathilde Brax, • The release of viscous polymeric substances represents a universal Robin Kaltenbach, Iwan Jerjen, Federica Marone, strategy. Estelle Couradeau, Vincent J.M.N.L. Felde, Anders Kaestner, and Andrea Carminati Plant roots and bacteria are capable of buffering erratic fluctuations of water content in their local soil environment by releasing a diverse, highly polymeric blend of substances (e.g. extracellular polymeric substances [EPS] and mucilage). Although this concept is well accepted, the physical mechanisms by which EPS and mucilage interact with the soil matrix and determine the soil water dynamics remain unclear. High-resolution X-ray computed tomography revealed that upon P. Benard, M. Zarebanadkouki, and A. Car- drying in porous media, mucilage (from maize [Zea mays L.] roots) and EPS (from minati, Faculty for Biology, Chemistry, and Earth Sciences, Chair of Soil Physics, Univ. of intact biocrusts) form filaments and two-dimensional interconnected structures Bayreuth, Universitätsstraße 30, 95447 Bay- spanning across multiple pores. Unlike water, these mucilage and EPS structures reuth, Bavaria, Germany; P. Benard, Faculty connecting soil particles did not break up upon drying, which is explained by of Agricultural Sciences, Group of Soil Hydro- logy, Univ. of Göttingen, Büsgenweg 2, 37077 the high viscosity and low surface tension of EPS and mucilage. -
Uptake of Metal Ions from Solution by Inactivated Cells of Cyanobacteria J.L
UPTAKE OF METAL IONS FROM SOLUTION BY INACTIVATED CELLS OF CYANOBACTERIA J.L. Gardea-Torresdey1,*, J.L. Arenas2, R. Webb2, K.J. Tiemann1, and J.H. Gonzalez1, 1Department of Chemistry, The University of Texas at El Paso, El Paso, TX, 79968, Phone 915- 747-5359, FAX: 915-747-5748, and 2Department of Biological Sciences, The University of Texas at El Paso, El Paso, TX, 79968 ABSTRACT Some species of cyanobacteria have the ability to grow under stress conditions that would kill many other bacteria. Solutions of 0.25 mM Cu2+ were inoculated with the cyanobacteria Synechococcus sp. PCC 7942 and Synechocystis sp. PCC 6803 with the idea that these cyanobacteria may develop certain defense mechanisms allowing their survival in such stressed environments. Transmission electron microscopy showed that Synechocystis sp. grown in 0.25 mM copper(II) developed a filamentous sheath around the cell wall, which could be responsible for binding copper ions on the cell surface. The presence of copper adsorbed by Synechocystis sp. was corroborated using environmental scanning electron microscopy equipped with an x-ray energy-dispersive spectrometer. Synechococcus has the ability to grow in mass quantity under ideal conditions, providing usable biomass at a minimal effort. Using lyophilized biomass grown under normal conditions, Synechococcus was tested for its potential to bind copper(II), lead(II), and nickel(II) ions from solution. Batch experiments were performed to determine the optimum binding pH, time dependency, and metal binding capacities for copper(II), lead(II), and nickel(II), along with desorption of the metal bound. The biomass studied showed a high affinity for all metal ions as the pH increased from two to six with optimum binding occurring at pH 5.