Understanding and Altering Cell Tropism of Vesicular Stomatitis Virus
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Novel Circular DNA Viruses in Stool Samples of Wild-Living Chimpanzees
Journal of General Virology (2010), 91, 74–86 DOI 10.1099/vir.0.015446-0 Novel circular DNA viruses in stool samples of wild-living chimpanzees Olga Blinkova,1 Joseph Victoria,1 Yingying Li,2 Brandon F. Keele,2 Crickette Sanz,33 Jean-Bosco N. Ndjango,4 Martine Peeters,5 Dominic Travis,6 Elizabeth V. Lonsdorf,7 Michael L. Wilson,8,9 Anne E. Pusey,9 Beatrice H. Hahn2 and Eric L. Delwart1 Correspondence 1Blood Systems Research Institute, San Francisco and the Department of Laboratory Medicine, Eric L. Delwart University of California, San Francisco, CA, USA [email protected] 2Departments of Medicine and Microbiology, University of Alabama at Birmingham, Birmingham, AL, USA 3Max-Planck Institute for Evolutionary Anthropology, Leipzig, Germany 4Department of Ecology and Management of Plant and Animal Ressources, Faculty of Sciences, University of Kisangani, Democratic Republic of the Congo 5UMR145, Institut de Recherche pour le De´velopement and University of Montpellier 1, Montpellier, France 6Department of Conservation and Science, Lincoln Park Zoo, Chicago, IL 60614, USA 7The Lester E. Fisher Center for the Study and Conservation of Apes, Lincoln Park Zoo, Chicago, IL 60614, USA 8Department of Anthropology, University of Minnesota, Minneapolis, MN 55455, USA 9Jane Goodall Institute’s Center for Primate Studies, Department of Ecology, Evolution and Behavior, University of Minnesota, St Paul, MN 55108, USA Viral particles in stool samples from wild-living chimpanzees were analysed using random PCR amplification and sequencing. Sequences encoding proteins distantly related to the replicase protein of single-stranded circular DNA viruses were identified. Inverse PCR was used to amplify and sequence multiple small circular DNA viral genomes. -
Identification of a Nanovirus-Alphasatellite Complex in Sophora Alopecuroides
Accepted Manuscript Title: Identification of a nanovirus-alphasatellite complex in Sophora alopecuroides Author: Jahangir Heydarnejad Mehdi Kamali Hossain Massumi Anders Kvarnheden Maketalena F. Male Simona Kraberger Daisy Stainton Darren P. Martin Arvind Varsani PII: S0168-1702(17)30009-6 DOI: http://dx.doi.org/doi:10.1016/j.virusres.2017.03.023 Reference: VIRUS 97113 To appear in: Virus Research Received date: 5-1-2017 Revised date: 15-3-2017 Accepted date: 18-3-2017 Please cite this article as: Heydarnejad, J., Kamali, M., Massumi, H., Kvarnheden, A., Male, M.F., Kraberger, S., Stainton, D., Martin, D.P., Varsani, A.,Identification of a nanovirus-alphasatellite complex in Sophora alopecuroides, Virus Research (2017), http://dx.doi.org/10.1016/j.virusres.2017.03.023 This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain. 1 Identification of a nanovirus-alphasatellite complex in Sophora alopecuroides 2 Jahangir Heydarnejad 1* , Mehdi Kamali 1, Hossain Massumi 1, Anders Kvarnheden 2, Maketalena 3 F. Male 3, Simona Kraberger 3,4 , Daisy Stainton 3,5 , Darren P. Martin 6 and Arvind Varsani 3,7,8* 4 5 1Department of Plant Protection, College -
Evidence That a Plant Virus Switched Hosts to Infect a Vertebrate and Then Recombined with a Vertebrate-Infecting Virus
Proc. Natl. Acad. Sci. USA Vol. 96, pp. 8022–8027, July 1999 Evolution Evidence that a plant virus switched hosts to infect a vertebrate and then recombined with a vertebrate-infecting virus MARK J. GIBBS* AND GEORG F. WEILLER Bioinformatics, Research School of Biological Sciences, The Australian National University, G.P.O. Box 475, Canberra 2601, Australia Communicated by Bryan D. Harrison, Scottish Crop Research Institute, Dundee, United Kingdom, April 28, 1999 (received for review December 22, 1998) ABSTRACT There are several similarities between the The history of viruses is further complicated by interspecies small, circular, single-stranded-DNA genomes of circoviruses recombination. Distinct viruses have recombined with each that infect vertebrates and the nanoviruses that infect plants. other, producing viruses with new combinations of genes (6, 7); We analyzed circovirus and nanovirus replication initiator viruses have also captured genes from their hosts (8, 9). These protein (Rep) sequences and confirmed that an N-terminal interspecies recombinational events join sequences with dif- region in circovirus Reps is similar to an equivalent region in ferent evolutionary histories; hence, it is important to test viral nanovirus Reps. However, we found that the remaining C- sequence datasets for evidence of recombination before phy- terminal region is related to an RNA-binding protein (protein logenetic trees are inferred. If a set of aligned sequences 2C), encoded by picorna-like viruses, and we concluded that contains regions with significantly different phylogenetic sig- the sequence encoding this region of Rep was acquired from nals and the regions are not delineated, errors may result. one of these single-stranded RNA viruses, probably a calici- Interspecies recombination between viruses has been linked virus, by recombination. -
1 Chapter I Overall Issues of Virus and Host Evolution
CHAPTER I OVERALL ISSUES OF VIRUS AND HOST EVOLUTION tree of life. Yet viruses do have the This book seeks to present the evolution of characteristics of life, can be killed, can become viruses from the perspective of the evolution extinct and adhere to the rules of evolutionary of their host. Since viruses essentially infect biology and Darwinian selection. In addition, all life forms, the book will broadly cover all viruses have enormous impact on the evolution life. Such an organization of the virus of their host. Viruses are ancient life forms, their literature will thus differ considerably from numbers are vast and their role in the fabric of the usual pattern of presenting viruses life is fundamental and unending. They according to either the virus type or the type represent the leading edge of evolution of all of host disease they are associated with. In living entities and they must no longer be left out so doing, it presents the broad patterns of the of the tree of life. evolution of life and evaluates the role of viruses in host evolution as well as the role Definitions. The concept of a virus has old of host in virus evolution. This book also origins, yet our modern understanding or seeks to broadly consider and present the definition of a virus is relatively recent and role of persistent viruses in evolution. directly associated with our unraveling the nature Although we have come to realize that viral of genes and nucleic acids in biological systems. persistence is indeed a common relationship As it will be important to avoid the perpetuation between virus and host, it is usually of some of the vague and sometimes inaccurate considered as a variation of a host infection views of viruses, below we present some pattern and not the basis from which to definitions that apply to modern virology. -
Varsani, Arvind Devshi
Dr Arvind Varsani Current Address: The Biodesign Institute and School of Life Sciences Tel No.: +1 480-727-2093 Arizona State University Cell No.: +1 480-410-9366 1001 S. McAllister Ave Tempe, AZ 85287-5001 USA E-mail: [email protected] EDUCATION 1998 - 2003 University of Cape Town, Cape Town, South Africa Degree course: PhD in Molecular and Cell Biology Thesis title: Development of candidate Human papillomavirus vaccines I investigated deleted and mutated gene products of the HPV-16 major capsid protein gene towards expressing candidate HPV vaccines in plants, with the final aim being the design and analysis of novel chimaeric HPV vaccines. 1993 - 1997 Loughborough University, Loughborough, England Degree Course: Medicinal and Pharmaceutical Chemistry (BSc, DIS) WORK EXPERIENCE 07/16 – current Arizona State University, Tempe, USA Associate professor in the Biodesign Center of Fundamental and Applied Microbiomics and the School of Life Sciences. I hold adjunct positions in the Biodesign Center for Molecular Evolution and the Center of Evolution and Medicine. I teach both undergraduate and postgraduate courses and run an active research group focused on virus evolution and virus discovery. 02/09 – 07/16 University of Canterbury, Christchurch, New Zealand Senior lecturer/ researcher in molecular biology / virology I taught virology, general molecular and microbiology to 1st, 2nd, 3rd and 4th year students and ran an active research program in DNA virus discovery and evolution. 07/03 – 09/08 University of Cape Town, Cape Town, South Africa Lecturer for the Masters program in Structural Biology at the University of Cape Town. Funded (5 years) by the Carnegie Corporation of New York, this was the first structural biology initiative in Africa. -
Structure of a Plant Geminivirus Using Cryo-EM
ARTICLE DOI: 10.1038/s41467-018-04793-6 OPEN The 3.3 Å structure of a plant geminivirus using cryo-EM Emma L. Hesketh 1, Keith Saunders2, Chloe Fisher1, Joran Potze2, John Stanley2, George P. Lomonossoff2 & Neil A. Ranson 1 Geminiviruses are major plant pathogens that threaten food security globally. They have a unique architecture built from two incomplete icosahedral particles, fused to form a geminate 1234567890():,; capsid. However, despite their importance to agricultural economies and fundamental bio- logical interest, the details of how this is realized in 3D remain unknown. Here we report the structure of Ageratum yellow vein virus at 3.3 Å resolution, using single-particle cryo-electron microscopy, together with an atomic model that shows that the N-terminus of the single capsid protein (CP) adopts three different conformations essential for building the interface between geminate halves. Our map also contains density for ~7 bases of single-stranded DNA bound to each CP, and we show that the interactions between the genome and CPs are different at the interface than in the rest of the capsid. With additional mutagenesis data, this suggests a central role for DNA binding-induced conformational change in directing the assembly of geminate capsids. 1 Astbury Centre for Structural Molecular Biology, School of Molecular & Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK. 2 Department of Biological Chemistry, John Innes Centre, Norwich Research Park, Colney, Norwich NR4 7UH, UK. These authors contributed equally: Emma L. Hesketh, Keith Saunders. Correspondence and requests for materials should be addressed to G.P.L. -
Virus De La Marchitez Del Tomate (Tomarv) En El Noroeste De México E Identificación De Hospedantes Alternos” TESIS
INSTITUTO POLITÉCNICO NACIONAL CENTRO INTERDISCIPLINARIO DE INVESTIGACIÓN PARA EL DESARROLLO INTEGRAL REGIONAL UNIDAD SINALOA “Presencia del Virus de la marchitez del tomate (ToMarV) en el Noroeste de México e identificación de hospedantes alternos” TESIS QUE PARA OBTENER EL GRADO DE MAESTRÍA EN RECURSOS NATURALES Y MEDIO AMBIENTE PRESENTA ROGELIO ARMENTA CHÁVEZ GUASAVE, SINALOA; MÉXICO DICIEMBRE, 2012 Agradecimientos a proyectos El trabajo de tesis se desarrolló en el Departamento de Biotecnología Agrícola del Centro Interdisciplinario de Investigación para el Desarrollo Integral Regional (CIIDIR) Unidad Sinaloa del Instituto Politécnico Nacional (IPN). El presente trabajo fue apoyado económicamente por el IPN y recursos autogenerados. El alumno Rogelio Armenta Chávez fue apoyado con una beca CONACYT con clave 366650 y por el IPN a través de la beca PIFI dentro del proyecto Determinación de la importancia de hospedantes alternos en la dispersión de Ca. Liberibacter sp. en el Norte de México (Con número de registro 20120507). DEDICATORIA A mis padres A ellos por haberme dado la vida y haberse preocupado día a día por mi bienestar y futuro, a ellos les dedicó esta tesis, mi vida y mi ser. Gracias por ser mis padres. A mi novia A mi novia Karen quien siempre me ha apoyado en todo, sin condición alguna; por darme su amor y cariño, por eso gracias. A mi tía Soledad Armenta Por estar a mi lado en los momentos difíciles y haberme dado su apoyo y fuerza para salir adelante día con día. Gracias por eso y por todo lo que venga. A mi hermana Quien ha estado conmigo en las buenas y en las malas a lo largo de mi vida; gracias hermana por ese apoyo tan peculiar que me das. -
Potential Role of Viruses in White Plague Coral Disease
The ISME Journal (2014) 8, 271–283 & 2014 International Society for Microbial Ecology All rights reserved 1751-7362/14 www.nature.com/ismej ORIGINAL ARTICLE Potential role of viruses in white plague coral disease Nitzan Soffer1,2, Marilyn E Brandt3, Adrienne MS Correa1,2,4, Tyler B Smith3 and Rebecca Vega Thurber1,2 1Department of Microbiology, Oregon State University, Corvallis, OR, USA; 2Department of Biological Sciences, Florida International University, North Miami, FL, USA; 3Center for Marine and Environmental Studies, University of the Virgin Islands, St Thomas, Virgin Islands, USA and 4Ecology and Evolutionary Biology Department, Rice University, Houston, TX, USA White plague (WP)-like diseases of tropical corals are implicated in reef decline worldwide, although their etiological cause is generally unknown. Studies thus far have focused on bacterial or eukaryotic pathogens as the source of these diseases; no studies have examined the role of viruses. Using a combination of transmission electron microscopy (TEM) and 454 pyrosequencing, we compared 24 viral metagenomes generated from Montastraea annularis corals showing signs of WP-like disease and/or bleaching, control conspecific corals, and adjacent seawater. TEM was used for visual inspection of diseased coral tissue. No bacteria were visually identified within diseased coral tissues, but viral particles and sequence similarities to eukaryotic circular Rep-encoding single-stranded DNA viruses and their associated satellites (SCSDVs) were abundant in WP diseased tissues. In contrast, sequence similarities to SCSDVs were not found in any healthy coral tissues, suggesting SCSDVs might have a role in WP disease. Furthermore, Herpesviridae gene signatures dominated healthy tissues, corroborating reports that herpes-like viruses infect all corals. -
Viral Outbreak in Corals Associated with an in Situ Bleaching Event: Atypical Herpes-Like Viruses and a New Megavirus Infecting Symbiodinium
ORIGINAL RESEARCH published: 22 February 2016 doi: 10.3389/fmicb.2016.00127 Viral Outbreak in Corals Associated with an In Situ Bleaching Event: Atypical Herpes-Like Viruses and a New Megavirus Infecting Symbiodinium Adrienne M. S. Correa1,2, Tracy D. Ainsworth3, Stephanie M. Rosales1, Andrew R. Thurber4, Christopher R. Butler1,5 and Rebecca L. Vega Thurber1* 1 Department of Microbiology, Oregon State University, Corvallis, OR, USA, 2 BioSciences at Rice, Rice University, Houston, TX, USA, 3 ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, QLD, Australia, 4 College of Earth, Ocean, and Atmospheric Sciences, Oregon State University, Corvallis, OR, USA, 5 Department of Viticulture and Enology, University of California at Davis, Davis, CA, USA Previous studies of coral viruses have employed either microscopy or metagenomics, Edited by: but few have attempted to comprehensively link the presence of a virus-like particle Ian Hewson, (VLP) to a genomic sequence. We conducted transmission electron microscopy imaging Cornell University, USA and virome analysis in tandem to characterize the most conspicuous viral types found Reviewed by: within the dominant Pacific reef-building coral genus Acropora. Collections for this Fabiano Thompson, Federal University of Rio de Janeiro, study inadvertently captured what we interpret as a natural outbreak of viral infection Brazil driven by aerial exposure of the reef flat coincident with heavy rainfall and concomitant Stéphan Jacquet, Institut National de la Recherche mass bleaching. All experimental corals in this study had high titers of viral particles. Agronomique, France Three of the dominant VLPs identified were observed in all tissue layers and budding Mya Breitbart, out from the epidermis, including viruses that were ∼70, ∼120, and ∼150 nm in University of South Florida, USA diameter; these VLPs all contained electron dense cores. -
Understanding the Pathogenesis of Porcine Circovirus Type 2 (PCV2)-Associated Diseases Tanja Ilse Opriessnig Iowa State University
Iowa State University Capstones, Theses and Retrospective Theses and Dissertations Dissertations 2006 Understanding the pathogenesis of porcine circovirus type 2 (PCV2)-associated diseases Tanja Ilse Opriessnig Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/rtd Part of the Microbiology Commons, and the Veterinary Pathology and Pathobiology Commons Recommended Citation Opriessnig, Tanja Ilse, "Understanding the pathogenesis of porcine circovirus type 2 (PCV2)-associated diseases " (2006). Retrospective Theses and Dissertations. 1481. https://lib.dr.iastate.edu/rtd/1481 This Dissertation is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Retrospective Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. Understanding the pathogenesis of porcine circovirus type 2 (PCV2)-associated diseases by Tanja Ilse Opriessnig A dissertation submitted to the graduate faculty in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY Major: Veterinary Pathology Program of Study Committee: Patrick G. Halbur, Major Professor Bruce H. Janke Mark R. Ackermann Richard B. Evans Eileen L. Thacker Iowa State University Ames, Iowa 2006 Copyright © Tanja Ilse Opriessnig, 2006. All rights reserved. UMI Number: 3218983 UMI Microform 3218983 Copyright 2006 by ProQuest Information and Learning Company. All rights reserved. This microform edition is protected against unauthorized copying under Title 17, United States Code. ProQuest Information and Learning Company 300 North Zeeb Road P.O. Box 1346 Ann Arbor, MI 48106-1346 ii Graduate College Iowa State University NOTE: Electronic theses will not contain the signed thesis approval page here. -
Virus Discovery in All Three Major Lineages of Terrestrial Arthropods Highlights the Diversity of Single-Stranded DNA Viruses Associated with Invertebrates
Virus discovery in all three major lineages of terrestrial arthropods highlights the diversity of single-stranded DNA viruses associated with invertebrates Karyna Rosario1, Kaitlin A. Mettel1, Bayleigh E. Benner1, Ryan Johnson1, Catherine Scott2, Sohath Z. Yusseff-Vanegas3, Christopher C.M. Baker4,5, Deby L. Cassill6, Caroline Storer7, Arvind Varsani8,9 and Mya Breitbart1 1 College of Marine Science, University of South Florida, Saint Petersburg, FL, USA 2 Department of Biological Sciences, University of Toronto, Scarborough, Scarborough, ON, Canada 3 Department of Biology, University of Vermont, Burlington, VT, USA 4 Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ, USA 5 Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USA 6 Department of Biological Sciences, University of South Florida Saint Petersburg, Saint Petersburg, FL, USA 7 School of Forest Resources and Conservation, University of Florida, Gainesville, FL, USA 8 The Biodesign Center for Fundamental and Applied Microbiomics, School of Life Sciences, Center for Evolution and Medicine, Arizona State University, Tempe, AZ, USA 9 Structural Biology Research Unit, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, South Africa ABSTRACT Viruses encoding a replication-associated protein (Rep) within a covalently closed, single-stranded (ss)DNA genome are among the smallest viruses known to infect eukaryotic organisms, including economically valuable agricultural crops and livestock. -
Deep Roots and Splendid Boughs of the Global Plant Virome
PY58CH11_Dolja ARjats.cls May 19, 2020 7:55 Annual Review of Phytopathology Deep Roots and Splendid Boughs of the Global Plant Virome Valerian V. Dolja,1 Mart Krupovic,2 and Eugene V. Koonin3 1Department of Botany and Plant Pathology and Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon 97331-2902, USA; email: [email protected] 2Archaeal Virology Unit, Department of Microbiology, Institut Pasteur, 75015 Paris, France 3National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894, USA Annu. Rev. Phytopathol. 2020. 58:11.1–11.31 Keywords The Annual Review of Phytopathology is online at plant virus, virus evolution, virus taxonomy, phylogeny, virome phyto.annualreviews.org https://doi.org/10.1146/annurev-phyto-030320- Abstract 041346 Land plants host a vast and diverse virome that is dominated by RNA viruses, Copyright © 2020 by Annual Reviews. with major additional contributions from reverse-transcribing and single- All rights reserved stranded (ss) DNA viruses. Here, we introduce the recently adopted com- prehensive taxonomy of viruses based on phylogenomic analyses, as applied to the plant virome. We further trace the evolutionary ancestry of distinct plant virus lineages to primordial genetic mobile elements. We discuss the growing evidence of the pivotal role of horizontal virus transfer from in- vertebrates to plants during the terrestrialization of these organisms, which was enabled by the evolution of close ecological associations between these diverse organisms. It is our hope that the emerging big picture of the forma- tion and global architecture of the plant virome will be of broad interest to plant biologists and virologists alike and will stimulate ever deeper inquiry into the fascinating field of virus–plant coevolution.