Reptile Scale Paradigm: Evo-Devo, Pattern Formation and Regeneration
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Reptile-Like Physiology in Early Jurassic Stem-Mammals
bioRxiv preprint doi: https://doi.org/10.1101/785360; this version posted October 10, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Title: Reptile-like physiology in Early Jurassic stem-mammals Authors: Elis Newham1*, Pamela G. Gill2,3*, Philippa Brewer3, Michael J. Benton2, Vincent Fernandez4,5, Neil J. Gostling6, David Haberthür7, Jukka Jernvall8, Tuomas Kankanpää9, Aki 5 Kallonen10, Charles Navarro2, Alexandra Pacureanu5, Berit Zeller-Plumhoff11, Kelly Richards12, Kate Robson-Brown13, Philipp Schneider14, Heikki Suhonen10, Paul Tafforeau5, Katherine Williams14, & Ian J. Corfe8*. Affiliations: 10 1School of Physiology, Pharmacology & Neuroscience, University of Bristol, Bristol, UK. 2School of Earth Sciences, University of Bristol, Bristol, UK. 3Earth Science Department, The Natural History Museum, London, UK. 4Core Research Laboratories, The Natural History Museum, London, UK. 5European Synchrotron Radiation Facility, Grenoble, France. 15 6School of Biological Sciences, University of Southampton, Southampton, UK. 7Institute of Anatomy, University of Bern, Bern, Switzerland. 8Institute of Biotechnology, University of Helsinki, Helsinki, Finland. 9Department of Agricultural Sciences, University of Helsinki, Helsinki, Finland. 10Department of Physics, University of Helsinki, Helsinki, Finland. 20 11Helmholtz-Zentrum Geesthacht, Zentrum für Material-und Küstenforschung GmbH Germany. 12Oxford University Museum of Natural History, Oxford, OX1 3PW, UK. 1 bioRxiv preprint doi: https://doi.org/10.1101/785360; this version posted October 10, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 13Department of Anthropology and Archaeology, University of Bristol, Bristol, UK. 14Faculty of Engineering and Physical Sciences, University of Southampton, Southampton, UK. -
Reptile Genomes Open the Frontier for Comparative Analysis of Amniote Development and Regeneration MARC TOLLIS, ELIZABETH D
Int. J. Dev. Biol. 58: 863-871 (2014) doi: 10.1387/ijdb.140316kk www.intjdevbiol.com Reptile genomes open the frontier for comparative analysis of amniote development and regeneration MARC TOLLIS, ELIZABETH D. HUTCHINS and KENRO KUSUMI* School of Life Sciences, Arizona State University, Tempe, AZ, USA ABSTRACT Developmental genetic studies of vertebrates have focused primarily on zebrafish, frog and mouse models, which have clear application to medicine and well-developed genomic resources. In contrast, reptiles represent the most diverse amniote group, but have only recently begun to gather the attention of genome sequencing efforts. Extant reptilian groups last shared a common ancestor ~280 million years ago and include lepidosaurs, turtles and crocodilians. This phylogenetic diversity is reflected in great morphological and behavioral diversity capturing the attention of biologists interested in mechanisms regulating developmental processes such as somitogenesis and spinal patterning, regeneration, the evolution of “snake-like” morphology, the formation of the unique turtle shell, and the convergent evolution of the four-chambered heart shared by mammals and archosaurs. The complete genome of the first non-avian reptile, the green anole lizard, was published in 2011 and has provided insights into the origin and evolution of amniotes. Since then, the genomes of multiple snakes, turtles, and crocodilians have also been completed. Here we will review the current diversity of available reptile genomes, with an emphasis on their evolutionary relationships, and will highlight how these genomes have and will continue to facilitate research in developmental and regenerative biology. KEY WORDS: reptile, genomics, gene expression, somitogenesis, regeneration Introduction 2013) in addition to 28 avian genomes (Table 1; Zhang et al., 2014). -
Lecture 6 – Integument ‐ Scale • a Scale Is a Small Rigid Plate That Grows out of an Animal’ S Skin to Provide Protection
Lecture 6 – Integument ‐ Scale • A scale is a small rigid plate that grows out of an animal’s skin to provide protection. • Scales are quite common and have evolved multiple times with varying structure and function. • Scales are generally classified as part of an organism's integumentary system. • There are various types of scales according to shape and to class of animal. • Although the meat and organs of some species of fish are edible by humans, the scales are usually not eaten. Scale structure • Fish scales Fish scales are dermally derived, specifically in the mesoderm. This fact distinguishes them from reptile scales paleontologically. Genetically, the same genes involved in tooth and hair development in mammals are also involved in scale development. Earliest scales – heavily armoured thought to be like Chondrichthyans • Fossil fishes • ion reservoir • osmotic control • protection • Weighting Scale function • Primary function is protection (armor plating) • Hydrodynamics Scales are composed of four basic compounds: ((gmoving from inside to outside in that order) • Lamellar bone • Vascular or spongy bone • Dentine (dermis) and is always associated with enamel. • Acellular enamel (epidermis) • The scales of fish lie in pockets in the dermis and are embeded in connective tissue. • Scales do not stick out of a fish but are covered by the Epithelial layer. • The scales overlap and so form a protective flexible armor capable of withstanding blows and bumping. • In some catfishes and seahorses, scales are replaced by bony plates. • In some other species there are no scales at all. Evolution of scales Placoid scale – (Chondricthyes – cartilagenous fishes) develop in dermis but protrude through epidermis. -
A Review of Vertebrate Track-Bearing Formations
5 Lockley, M.G. & Lucas, S.G., eds., 2014, Fossil footprints of western North America: NMMNHS Bulletin 62 A REVIEW OF VERTEBRATE TRACK-BEARING FORMATIONS FROM THE MESOZOIC AND EARLIEST CENOZOIC OF WESTERN CANADA WITH A DESCRIPTION OF A NEW THEROPOD ICHNOSPECIES AND REASSIGNMENT OF AN AVIAN ICHNOGENUS RICHARD T. MCCREA1, LISA G. BUCKLEY1, A. GUY PLINT2, PHILIP J. CURRIE3, JAMES W. HAGGART4, CHARLES W. HELM1 AND S. GEORGE PEMBERTON5 1Peace Region Palaeontology Research Centre; Box 1540; Tumbler Ridge, British Columbia; V0C 2W0; CANADA; 2Department of Earth Sciences; University of Western Ontario; London, Ontario; N6A 5B7; CANADA; 3Department of Biological Sciences; University of Alberta, Edmonton, Alberta; T6G 2E9; CANADA; 4Geological Survey of Canada; 1500-605 Robson Street; Vancouver, British Columbia; V6B 5J3; CANADA; 5Department of Earth and Atmospheric Sciences; University of Alberta; Edmonton, Alberta; T6G 2E3; CANADA Abstract—The past quarter century has seen a marked increase in the recognition of fossil vertebrate tracksites in western Canada. Most of these finds were made in Alberta and British Columbia, but the Yukon Territory can lay claim to at least one tracksite and probably has the potential to yield more sites. The record of dinosaur tracks with skin impressions has increased dramatically, and is now represented by specimens of ankylosaurs, large ornithopods, small theropods and tyrannosauroids. Notable new finds include the first record of sauropods in Canada, evidence of herding behavior in ankylosaurs and the first pterosaur tracks in Canada. First discoveries of track specimens from several formations in western Canada include the Mountain Park Member of the Gates Formation in Alberta, and the Boulder Creek, Goodrich, Kaskapau, Cardium and Marshybank formations in northeastern British Columbia. -
History and Function of Scale Microornamentation in Lacertid Lizards
JOURNALOFMORPHOLOGY252:145–169(2002) HistoryandFunctionofScaleMicroornamentation inLacertidLizards E.N.Arnold* NaturalHistoryMuseum,CromwellRoad,LondonSW75BD,UK ABSTRACTDifferencesinsurfacestructure(ober- mostfrequentlyinformsfromdryhabitatsorformsthat hautchen)ofbodyscalesoflacertidlizardsinvolvecell climbinvegetationawayfromtheground,situations size,shapeandsurfaceprofile,presenceorabsenceoffine wheredirtadhesionislessofaproblem.Microornamen- pitting,formofcellmargins,andtheoccurrenceoflongi- tationdifferencesinvolvingotherpartsofthebodyand tudinalridgesandpustularprojections.Phylogeneticin- othersquamategroupstendtocorroboratethisfunctional formationindicatesthattheprimitivepatterninvolved interpretation.Microornamentationfeaturescandevelop narrowstrap-shapedcells,withlowposteriorlyoverlap- onlineagesindifferentordersandappeartoactadditively pingedgesandrelativelysmoothsurfaces.Deviations inreducingshine.Insomecasesdifferentcombinations fromthisconditionproduceamoresculpturedsurfaceand maybeoptimalsolutionsinparticularenvironments,but havedevelopedmanytimes,althoughsubsequentovert lineageeffects,suchaslimitedreversibilityanddifferent reversalsareuncommon.Likevariationsinscaleshape, developmentalproclivities,mayalsobeimportantintheir differentpatternsofdorsalbodymicroornamentationap- peartoconferdifferentandconflictingperformancead- genesis.Thefinepitsoftenfoundoncellsurfacesare vantages.Theprimitivepatternmayreducefrictiondur- unconnectedwithshinereduction,astheyaresmaller inglocomotionandalsoenhancesdirtshedding,especially thanthewavelengthsofmostvisiblelight.J.Morphol. -
FGF Signalling Regulates Early Tail Denticle Formation in Sharks Rory L
Cooper et al. EvoDevo (2017) 8:8 DOI 10.1186/s13227-017-0071-0 EvoDevo RESEARCH Open Access Developing an ancient epithelial appendage: FGF signalling regulates early tail denticle formation in sharks Rory L. Cooper, Kyle J. Martin, Liam J. Rasch and Gareth J. Fraser* Abstract Background: Vertebrate epithelial appendages constitute a diverse group of organs that includes integumentary structures such as reptilian scales, avian feathers and mammalian hair. Recent studies have provided new evidence for the homology of integumentary organ development throughout amniotes, despite their disparate fnal morpholo- gies. These structures develop from conserved molecular signalling centres, known as epithelial placodes. It is not yet certain whether this homology extends beyond the integumentary organs of amniotes, as there is a lack of knowl- edge regarding their development in basal vertebrates. As the ancient sister lineage of bony vertebrates, extant chon- drichthyans are well suited to testing the phylogenetic depth of this homology. Elasmobranchs (sharks, skates and rays) possess hard, mineralised epithelial appendages called odontodes, which include teeth and dermal denticles (placoid scales). Odontodes constitute some of the oldest known vertebrate integumentary appendages, predating the origin of gnathostomes. Here, we used an emerging model shark (Scyliorhinus canicula) to test the hypothesis that denticles are homologous to other placode-derived amniote integumentary organs. To examine the conservation of putative gene regulatory network (GRN) member function, we undertook small molecule inhibition of fbroblast growth factor (FGF) signalling during caudal denticle formation. Results: We show that during early caudal denticle morphogenesis, the shark expresses homologues of conserved developmental gene families, known to comprise a core GRN for early placode morphogenesis in amniotes. -
Key to the Freshwater Fishes of Maryland Key to the Freshwater Fishes of Maryland
KEY TO THE FRESHWATER FISHES OF MARYLAND KEY TO THE FRESHWATER FISHES OF MARYLAND Compiled by P.F. Kazyak; R.L. Raesly Graphics by D.A. Neely This key to the freshwater fishes of Maryland was prepared for the Maryland Biological Stream Survey to support field and laboratory identifications of fishes known to occur or potentially occurring in Maryland waters. A number of existing taxonomic keys were used to prepare the initial version of this key to provide a more complete set of identifiable features for each species and minimize the possibility of incorrectly identifying new or newly introduced species. Since that time, we have attempted to remove less useful information from the key and have enriched the key by adding illustrations. Users of this key should be aware of the possibility of taking a fish species not listed, especially in areas near the head-of- tide. Glossary of anatomical terms Ammocoete - Larval lamprey. Lateral field - Area of scales between anterior and posterior fields. Basal - Toward the base or body of an object. Mandible - Lower jaw. Branchial groove - Horizontal groove along which the gill openings are aligned in lampreys. Mandibular pores - Series of pores on the ventral surface of mandible. Branchiostegal membranes - Membranes extending below the opercles and connecting at the throat. Maxillary - Upper jaw. Branchiostegal ray - Splint-like bone in the branchiostegal Myomeres - Dorsoventrally oriented muscle bundle on side of fish. membranes. Myoseptum - Juncture between myomeres. Caudal peduncle - Slender part of body between anal and caudal fin. Palatine teeth - Small teeth just posterior or lateral to the medial vomer. -
Spatial Distribution of the Nile Crocodile (Crocodylus Niloticus)
Spatial distribution of the Nile crocodile ( Crocodylus niloticus ) in the Mariarano River system, Northwestern Madagascar By Caroline A. Jablonicky A Thesis Presented to the FACULTY OF THE USC GRADUATE SCHOOL UNIVERSITY OF SOUTHERN CALIFORNIA In Partial Fulfillment of the Requirements for the Degree MASTER OF SCIENCE (GEOGRAPHIC INFORMATION SCIENCE AND TECHNOLOGY) May 2013 Copyright 2013 Caroline A. Jablonicky Contents List of Tables iv List of Figures v Abstract vii Chapter 1: Introduction 1 Purpose 1 Organization 4 Chapter 2: Literature Review 6 Human-crocodile conflict 6 Species Distribution Models 8 Maximum Entropy Methods 10 Detection Probability 11 Chapter 3: Methods 12 Study Site 12 Data Collection and Methodology 13 Database 14 Model Covariates 15 Maxent Modeling Procedure 24 Model Performance Measures and Covariate Importance 25 ii Chapter 4: Results 27 Survey Results 27 Nile crocodile ( Crocodylus niloticus ) Habitat Suitability Maps 28 Model Validation 30 Variable Contribution and Importance 32 Predictor Variable (Covariate) Importance 33 Chapter 5: Discussion 36 Field Data 36 Model Strengths and Conclusions 36 Model Limitations 38 Future Research Directions 40 Future Uses 41 References 42 iii List of Tables Table 1. List, explanation and source of covariates used within the two Maxent models 15 Table 2. Maxent model regularization parameters and applied model constraints 24 Table 3. Measure of the performance of the model produced by Maxent based on the AUC value (Araújo and Guisan, 2006) 25 Table 4. Percent contribution of each predictor variable, including only biophysical covariates in the model 32 Table 5. Percent contribution of each predictor variable, when all covariates were included in the model 33 iv List of Figures Figure 1. -
Tetrapod Limb and Sarcopterygian Fin Regeneration Share a Core Genetic
ARTICLE Received 28 Apr 2016 | Accepted 27 Sep 2016 | Published 2 Nov 2016 DOI: 10.1038/ncomms13364 OPEN Tetrapod limb and sarcopterygian fin regeneration share a core genetic programme Acacio F. Nogueira1,*, Carinne M. Costa1,*, Jamily Lorena1, Rodrigo N. Moreira1, Gabriela N. Frota-Lima1, Carolina Furtado2, Mark Robinson3, Chris T. Amemiya3,4, Sylvain Darnet1 & Igor Schneider1 Salamanders are the only living tetrapods capable of fully regenerating limbs. The discovery of salamander lineage-specific genes (LSGs) expressed during limb regeneration suggests that this capacity is a salamander novelty. Conversely, recent paleontological evidence supports a deeper evolutionary origin, before the occurrence of salamanders in the fossil record. Here we show that lungfishes, the sister group of tetrapods, regenerate their fins through morphological steps equivalent to those seen in salamanders. Lungfish de novo transcriptome assembly and differential gene expression analysis reveal notable parallels between lungfish and salamander appendage regeneration, including strong downregulation of muscle proteins and upregulation of oncogenes, developmental genes and lungfish LSGs. MARCKS-like protein (MLP), recently discovered as a regeneration-initiating molecule in salamander, is likewise upregulated during early stages of lungfish fin regeneration. Taken together, our results lend strong support for the hypothesis that tetrapods inherited a bona fide limb regeneration programme concomitant with the fin-to-limb transition. 1 Instituto de Cieˆncias Biolo´gicas, Universidade Federal do Para´, Rua Augusto Correa, 01, Bele´m66075-110,Brazil.2 Unidade Genoˆmica, Programa de Gene´tica, Instituto Nacional do Caˆncer, Rio de Janeiro 20230-240, Brazil. 3 Benaroya Research Institute at Virginia Mason, 1201 Ninth Avenue, Seattle, Washington 98101, USA. 4 Department of Biology, University of Washington 106 Kincaid, Seattle, Washington 98195, USA. -
Lizard Scales in an Adaptive Radiation: Variation in Scale Number Follows Climatic and Structural Habitat Diversity in Anolis Lizards
bs_bs_banner Biological Journal of the Linnean Society, 2014, 113, 570–579. With 4 figures Lizard scales in an adaptive radiation: variation in scale number follows climatic and structural habitat diversity in Anolis lizards JOHANNA E. WEGENER1*, GABRIEL E. A. GARTNER2 and JONATHAN B. LOSOS3 1Department of Biological Sciences, University of Rhode Island, Kingston, RI 02881, USA 2Department of Biology, Ithaca College, Ithaca, NY 14850, USA 3Museum of Comparative Zoology and Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA Received 28 February 2014; revised 7 June 2014; accepted for publication 7 June 2014 Lizard scales vary in size, shape and texture among and within species. The overall function of scales in squamates is attributed to protection against abrasion, solar radiation and water loss. We quantified scale number of Anolis lizards across a large sample of species (142 species) and examined whether this variation was related either to structural or to climatic habitat diversity. We found that species in dry environments have fewer, larger scales than species in humid environments. This is consistent with the hypothesis that scales reduce evaporative water loss through the skin. In addition, scale number varied among groups of ecomorphs and was correlated with aspects of the structural microhabitat (i.e. perch height and perch diameter). This was unexpected because ecomorph groups are based on morphological features related to locomotion in different structural microhabitats. Body scales are not likely to play an important role in locomotion in Anolis lizards. The observed variation may relate to other features of the ecomorph niche and more work is needed to understand the putative adaptive basis of these patterns. -
I Ecomorphological Change in Lobe-Finned Fishes (Sarcopterygii
Ecomorphological change in lobe-finned fishes (Sarcopterygii): disparity and rates by Bryan H. Juarez A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science (Ecology and Evolutionary Biology) in the University of Michigan 2015 Master’s Thesis Committee: Assistant Professor Lauren C. Sallan, University of Pennsylvania, Co-Chair Assistant Professor Daniel L. Rabosky, Co-Chair Associate Research Scientist Miriam L. Zelditch i © Bryan H. Juarez 2015 ii ACKNOWLEDGEMENTS I would like to thank the Rabosky Lab, David W. Bapst, Graeme T. Lloyd and Zerina Johanson for helpful discussions on methodology, Lauren C. Sallan, Miriam L. Zelditch and Daniel L. Rabosky for their dedicated guidance on this study and the London Natural History Museum for courteously providing me with access to specimens. iii TABLE OF CONTENTS ACKNOWLEDGEMENTS ii LIST OF FIGURES iv LIST OF APPENDICES v ABSTRACT vi SECTION I. Introduction 1 II. Methods 4 III. Results 9 IV. Discussion 16 V. Conclusion 20 VI. Future Directions 21 APPENDICES 23 REFERENCES 62 iv LIST OF TABLES AND FIGURES TABLE/FIGURE II. Cranial PC-reduced data 6 II. Post-cranial PC-reduced data 6 III. PC1 and PC2 Cranial and Post-cranial Morphospaces 11-12 III. Cranial Disparity Through Time 13 III. Post-cranial Disparity Through Time 14 III. Cranial/Post-cranial Disparity Through Time 15 v LIST OF APPENDICES APPENDIX A. Aquatic and Semi-aquatic Lobe-fins 24 B. Species Used In Analysis 34 C. Cranial and Post-Cranial Landmarks 37 D. PC3 and PC4 Cranial and Post-cranial Morphospaces 38 E. PC1 PC2 Cranial Morphospaces 39 1-2. -
Developmental Plasticity and the Origin of Tetrapods
ARTICLE doi:10.1038/nature13708 Developmental plasticity and the origin of tetrapods Emily M. Standen1, Trina Y. Du2 & Hans C. E. Larsson2 The origin of tetrapods from their fish antecedents, approximately 400 million years ago, was coupled with the origin of terrestrial locomotion and the evolution of supporting limbs. Polypterus is a memberof the basal-most group of ray-finned fish (actinopterygians) and has many plesiomorphic morphologies that are comparable to elpistostegid fishes, which are stem tetrapods. Polypterus therefore serves as an extant analogue of stem tetrapods, allowing us to examine how devel- opmental plasticity affects the ‘terrestrialization’ of fish. We measured the developmental plasticity of anatomical and biomechanical responses in Polypterus reared on land. Here we show the remarkable correspondence between the envi- ronmentally induced phenotypes of terrestrialized Polypterus and the ancient anatomical changes in stem tetrapods, and we provide insight into stem tetrapod behavioural evolution. Our results raise the possibility that environmentally induced developmental plasticity facilitated the origin of the terrestrial traits that led to tetrapods. The evolution of terrestrial locomotion in vertebrates required the appear- a sister taxon to the derived groups of interest can be used to estimate the ance of new behaviours and supporting appendicular structures1–8.The ancestral plasticity12. skeletal changes included the origin of supporting limbs, the decoupling of In this study, we investigated developmental