Differences in the Composition of Cultivable Aerobic and Facultative Anaerobic Oral Microbiota in Cats of Various Age Groups
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Antimicrobial Resistance in Companion Animal Pathogens in Australia and Assessment of Pradofloxacin on the Gut Microbiota
Antimicrobial resistance in companion animal pathogens in Australia and assessment of pradofloxacin on the gut microbiota Sugiyono Saputra A thesis submitted in fulfilment of the requirements of the degree of Doctor of Philosophy School of Animal and Veterinary Sciences The University of Adelaide February 2018 Table of Contents Thesis Declaration ...................................................................................................................... iii Dedication ................................................................................................................................. iv Acknowledgement ...................................................................................................................... v Preamble .................................................................................................................................... vi List of Publications ..................................................................................................................... vii Abstract .......................................................................................................................................ix Chapter 1 General Introduction ................................................................................................. 1 1.1. Antimicrobials and their consequences ............................................................................ 2 1.2. The emergence and monitoring AMR................................................................................ 2 -
Get Consistent and Reliable Results
Need help selecting? M Microbiology Free Tech Support 800-323-4340 Cole-Parmer® Dehydrated Culture Media Get consistent and reliable results – Use when ready or dehydrated culture extends shelf life – Individually numbered with certificate of compliance expiration date, and shelf-life guarantee – Quick dissolve for faster processing – For laboratory use only Media, Dehydrated Media, Media Description Size (g) Catalog number Price Agar, bacteriological This clear gel agar is high grade and manufactured using the ice method 500 GH-14200-10 Azide dextrose broth Use for detection of fecal Streptococci in water and sewage 500 GH-14202-00 Baird parker agar Use for the selective isolation of coagulase positive Staphylococci in food 500 GH-14202-01 Blood agar base with low pH Use to cultivate a wide variety of bacteria 500 GH-14202-02 This is used as a differential medium in the isolation and presumptive identification of Bile Esculin agar 500 GH-14202-03 enterococci/group D streptococci Brain heart infusion agar Use to cultivate a wide spectrum of bacteria, yeasts, and molds 500 GH-14200-12 Brain heart infusion broth Use to cultivate fastidious aerobic and anaerobic bacteria 500 GH-14202-05 Brilliant green bile broth A standard methods medium for confirmed and completed tests for coliforms in water 500 GH-14200-14 Buffered peptone water Helps in the recovery of Salmonella from foods after preservation techniques 500 GH-14202-08 Cetrimide agar Use for the selective isolation of Pseudomonas aeruginosa 500 GH-14200-52 This broth is especially suited for environmental sampling where neutralization of the chemical D/E neutralizing Broth 500 GH-14202-11 is important to determining the bactericidal activity Use to isolate E. -
The Genera Staphylococcus and Macrococcus
Prokaryotes (2006) 4:5–75 DOI: 10.1007/0-387-30744-3_1 CHAPTER 1.2.1 ehT areneG succocolyhpatS dna succocorcMa The Genera Staphylococcus and Macrococcus FRIEDRICH GÖTZ, TAMMY BANNERMAN AND KARL-HEINZ SCHLEIFER Introduction zolidone (Baker, 1984). Comparative immu- nochemical studies of catalases (Schleifer, 1986), The name Staphylococcus (staphyle, bunch of DNA-DNA hybridization studies, DNA-rRNA grapes) was introduced by Ogston (1883) for the hybridization studies (Schleifer et al., 1979; Kilp- group micrococci causing inflammation and per et al., 1980), and comparative oligonucle- suppuration. He was the first to differentiate otide cataloguing of 16S rRNA (Ludwig et al., two kinds of pyogenic cocci: one arranged in 1981) clearly demonstrated the epigenetic and groups or masses was called “Staphylococcus” genetic difference of staphylococci and micro- and another arranged in chains was named cocci. Members of the genus Staphylococcus “Billroth’s Streptococcus.” A formal description form a coherent and well-defined group of of the genus Staphylococcus was provided by related species that is widely divergent from Rosenbach (1884). He divided the genus into the those of the genus Micrococcus. Until the early two species Staphylococcus aureus and S. albus. 1970s, the genus Staphylococcus consisted of Zopf (1885) placed the mass-forming staphylo- three species: the coagulase-positive species S. cocci and tetrad-forming micrococci in the genus aureus and the coagulase-negative species S. epi- Micrococcus. In 1886, the genus Staphylococcus dermidis and S. saprophyticus, but a deeper look was separated from Micrococcus by Flügge into the chemotaxonomic and genotypic proper- (1886). He differentiated the two genera mainly ties of staphylococci led to the description of on the basis of their action on gelatin and on many new staphylococcal species. -
UNIVERSIDADE NOVA DE LISBOA Instituto De Higiene E Medicina Tropical Caracterização De Plasmídeos De Staphylococcus Epidermid
UNIVERSIDADE NOVA DE LISBOA Instituto de Higiene e Medicina Tropical Caracterização de plasmídeos de Staphylococcus epidermidis e correlação com a resistência a compostos antimicrobianos mediada por efluxo Frederico Duarte Holtreman DISSERTAÇÃO PARA OBTENÇÃO DO GRAU DE MESTRE EM CIÊNCIAS BIOMÉDICAS ESPECIALIDADE EM BIOLOGIA MOLECULAR EM MEDICINA TROPICAL E INTERNACIONAL ABRIL DE 2018 UNIVERSIDADE NOVA DE LISBOA Instituto de Higiene e Medicina Tropical Caracterização de plasmídeos de Staphylococcus epidermidis e correlação com a resistência a compostos antimicrobianos mediada por efluxo Frederico Duarte Holtreman DISSERTAÇÃO PARA OBTENÇÃO DO GRAU DE MESTRE EM CIÊNCIAS BIOMÉDICAS ESPECIALIDADE EM BIOLOGIA MOLECULAR EM MEDICINA TROPICAL E INTERNACIONAL Orientadora: Professora Doutora Isabel Couto Co-orientadoras: Doutora Sofia Santos Costa Professora Doutora Constança Pomba Laboratório onde o trabalho experimental foi desenvolvido: Unidade de Microbiologia Médica Instituto de Higiene e Medicina Tropical, Universidade Nova de Lisboa ABRIL DE 2018 Comunicações em congressos Os resultados apresentados na presente Dissertação foram objecto de apresentação em co- autoria das seguintes comunicações em congressos, sob a forma de Poster: Holtreman F, Costa SS, Rosa M, Viveiros M, Pomba C, Couto I. Influência do efluxo na resistência a antibióticos e susceptibilidade reduzida aos biocidas em Staphylococcus epidermidis. In Livro de abstracts do 4º Congresso Nacional de Medicina Tropical, IHMT, pp. 96. Lisboa, Portugal, 19-21 de Abril 2017 Holtreman F, Costa SS, Rosa M, Viveiros M, Pomba C, Couto I. Characterization of plasmid encoded efflux determinants from Staphylococcus epidermidis. In Livro de abstracts do Congresso Nacional de Microbiologia e Biotecnologia (Microbiotec17), pp. 353, P-273. Porto, Portugal, 7-9 de Dezembro 2017. Costa SS, Rosa M, Rodrigues AC, Santos CM, Holtreman F, Viveiros M, Pomba C, Couto I. -
BD Industry Catalog
PRODUCT CATALOG INDUSTRIAL MICROBIOLOGY BD Diagnostics Diagnostic Systems Table of Contents Table of Contents 1. Dehydrated Culture Media and Ingredients 5. Stains & Reagents 1.1 Dehydrated Culture Media and Ingredients .................................................................3 5.1 Gram Stains (Kits) ......................................................................................................75 1.1.1 Dehydrated Culture Media ......................................................................................... 3 5.2 Stains and Indicators ..................................................................................................75 5 1.1.2 Additives ...................................................................................................................31 5.3. Reagents and Enzymes ..............................................................................................75 1.2 Media and Ingredients ...............................................................................................34 1 6. Identification and Quality Control Products 1.2.1 Enrichments and Enzymes .........................................................................................34 6.1 BBL™ Crystal™ Identification Systems ..........................................................................79 1.2.2 Meat Peptones and Media ........................................................................................35 6.2 BBL™ Dryslide™ ..........................................................................................................80 -
1 SUPPLEMENTARY INFORMATION Captive Bottlenose Dolphins And
SUPPLEMENTARY INFORMATION Captive bottlenose dolphins and killer whales harbor a species-specific skin microbiota that varies among individuals Chiarello M., Villéger S., Bouvier C., Auguet JC., and Bouvier T. 1 Supplementary Information S1: Description of the two PCR protocols used in this study and comparison of bacterial composition on water samples Skin samples Water samples Kit Phusion High-Fidelity PuRe Taq Ready-To-Go PCR Beads Total vol. (µL) 20 25 DNA vol. (µL) 2 5 Initial denaturation 1 min 98°C 2 min 94°C PCR cycle 1 min 94°C; 40s 57.8°C; 30s 72°C 1 min 94°C; 40s 57.8°C; 30s 72°C Nb. of cycles 35 35 Final extension 10 min 72°C 10 min 72°C S1-Table 1: PCR reagents and conditions used for the two sample types studied. Skin DNA and water DNA were respectively amplified using the Phusion High-Fidelity DNA polymerase (Biolabs, Ipswich, USA) and PuRe Taq Ready-To-Go PCR Beads (Amersham Biosciences, Freiburg, Germany) following manufacturer’s instructions. 2 S1-Fig 1: Most abundant classes and families in planktonic communities analyzed using Phusion and Ready-To-Go kits. Both PCR types were performed on the same DNA extracted from animals’ surrounding water. Class-level bacterial composition was very similar between both PCR types. 3 S1-Fig 2: PCoAs based on Weighted Unifrac, showing planktonic communities analyzed using both PCR types. On (A) panel, all samples included in this study plus water replicates that could be amplified using Phusion kit. On (B) panel, only planktonic communities were displayed. -
Molecular Population and Colonisation Factor Analysis of The
Molecular population and colonisation factor analysis of the Staphylococcus intermedius group Jeanette Bannoehr Thesis presented for the degree of Doctor of Philosophy The University of Edinburgh 2009 Declaration The research presented in this thesis is entirely my own work, except where otherwise stated. No part of this thesis has been submitted in any other application for a degree or professional qualification. Jeanette Bannoehr September 2009 ii Acknowledgements I would like to thank my supervisors Dr. J. Ross Fitzgerald, Professor Keith L. Thoday, and Professor Adri H. M. van den Broek for their support, guidance, and advice throughout the course of this study. I am also grateful to Keith and Adri for encouraging my interest in small animal dermatology. I also would like to thank Dr. Nouri L. Ben Zakour for invaluable help and patience with all the bioinformatics, and to Dr. Caitriona Guinane for sharing her molecular knowledge and technical expertise. I am thankful to many people at The University of Edinburgh for technical assistance, including Dr. Jeremy Brown for helping with the computerised image analysis, Robyn Cartwright for the work with CK10, Dr. Even Fossum and Professor Juergen Haas for introducing me to Gateway cloning, Lorna Hume for help with the moisture chambers, Dr. Arvind Mahajan and Edith Paxton for the introduction to cell culture work, and Dr. Darren Shaw for support and advice with the statistical analysis. I am very grateful to Professor Magnus Hook, Texas A & M University, USA for inviting me and to Dr. Sabitha Prabhakaran for fantastic technical support during my stay in Texas. I would like to acknowledge the Royal (Dick) School of Veterinary Studies for funding this research. -
Microbial Diversity and Dynamics During the Production of May Bryndza Cheese
International Journal of Food Microbiology 170 (2014) 38–43 Contents lists available at ScienceDirect International Journal of Food Microbiology journal homepage: www.elsevier.com/locate/ijfoodmicro Microbial diversity and dynamics during the production of May bryndza cheese Domenico Pangallo a,⁎, Nikoleta Šaková a,c, Janka Koreňová b, Andrea Puškárová a, Lucia Kraková a, Lubomír Valík c,Tomáš Kuchta b a Institute of Molecular Biology, Slovak Academy of Sciences, Dúbravská cesta 21, 845 51 Bratislava, Slovakia b Department of Microbiology and Molecular Biology, Food Research Institute, Priemyselná 4, P. O. Box 25, 824 75 Bratislava 26, Slovakia c Department of Nutrition and Food Quality Assessment, Faculty of Chemical and Food Technology, Slovak University of Technology, Radlinského 9, 812 37 Bratislava, Slovakia article info abstract Article history: Diversity and dynamics of microbial cultures were studied during the production of May bryndza cheese, a tra- Received 18 March 2013 ditional Slovak cheese produced from unpasteurized ewes' milk. Quantitative culture-based data were obtained Received in revised form 27 August 2013 for lactobacilli, lactococci, total mesophilic aerobic counts, coliforms, E. coli, staphylococci, coagulase-positive Accepted 23 October 2013 staphylococci, yeasts, fungi and Geotrichum spp. in ewes' milk, curd produced from it and ripened for 0 – Available online 30 October 2013 10 days, and in bryndza cheese produced from the curd, in three consecutive batches. Diversity of prokaryotes fi Keywords: and eukaryotes in selected stages of the production was studied by non-culture approach based on ampli cation Ewes' cheese of 16S rDNA and internal transcribed spacer region, coupled to denaturing gradient gel electrophoresis and se- Microbial dynamic quencing. -
Protective Effects of Probiotics on Cognitive and Motor Functions, Anxiety Level, Visceral Sensitivity, Oxidative Stress And
life Article Protective Effects of Probiotics on Cognitive and Motor Functions, Anxiety Level, Visceral Sensitivity, Oxidative Stress and Microbiota in Mice with Antibiotic-Induced Dysbiosis Alisa Arslanova 1, Aksiniya Tarasova 1, Anastasia Alexandrova 2, Vera Novoselova 2, Ilnar Shaidullov 1 , Dilyara Khusnutdinova 3, Tatiana Grigoryeva 3, Dina Yarullina 2, Olga Yakovleva 1 and Guzel Sitdikova 1,* 1 Department of Human and Animal Physiology, Institute of Fundamental Medicine and Biology, Kazan Federal University, 420008 Kazan, Republic of Tatarstan, Russia; [email protected] (A.A.); [email protected] (A.T.); [email protected] (I.S.); [email protected] (O.Y.) 2 Department of Microbiology, Institute of Fundamental Medicine and Biology, Kazan Federal University, 420008 Kazan, Republic of Tatarstan, Russia; [email protected] (A.A.); [email protected] (V.N.); [email protected] (D.Y.) 3 “Omics Technologies” Laboratory, Institute of Fundamental Medicine and Biology, Kazan Federal University, 420008 Kazan, Republic of Tatarstan, Russia; [email protected] (D.K.); [email protected] (T.G.) * Correspondence: [email protected] Citation: Arslanova, A.; Tarasova, A.; Abstract: Accumulating clinical and preclinical data indicate a prominent role of gut microbiota in Alexandrova, A.; Novoselova, V.; regulation of physiological functions. The gut-brain axis imbalance due to gut dysbiosis is associated Shaidullov, I.; Khusnutdinova, D.; with a range of neurodegenerative diseases. Probiotics were suggested not only to restore intestinal Grigoryeva, T.; Yarullina, D.; dysbiosis but also modulate stress response and improve mood and anxiety symptoms. In this study, Yakovleva, O.; Sitdikova, G. we assessed the effects of probiotic lactobacilli on behavioral reactions, the level of oxidative stress Protective Effects of Probiotics on and microbiota content in mice administered to broad-spectrum antibiotics. -
International Catalogue 2014
Microbiology Microbiology IVD IVD INTERNATIONALINTERNATIONAL CATACATALOGUELOGUE 2014 Microbiology In Vitro Diagnostics Viale Monza 272, 20128 Milan, Italy Biolife Leader in Microbiology 2 1 20162 0 6 CHROMOGENICCHHROOMOG6 CRE 1992 19929 C-EC AGARAGA [ \ 2 1 20152 0 5 of E.coli 5 CHROMOGENICCHHROOMOG ESBL for the detection of ESBL 1996 19961 1968 ALOA 19 19869 86 [ Dehydrated culture 6 medium for the media manufacturing. MUCAPMUCCAP TESTTE detection and [ enumeration of Hektoen Enteric Agar, L.monocytogenes Giolitti & Cantoni Broth, for Salmonella, made Staphylococci 110 Medium: Biolife 2 1 20132 0 3 [ 3 Biolife. CHROMOGENICCHHROOMOG STREP B for the detection of S.agalactiae 19 2 19 19821 1985 8 85 SELECTIVE MICROBIOLOGY8 MUG MEDIA 199898 19989 Biolife [ CHROMOGENICOMOGENIC Biolife SALMONELLA AGAR (CSA) [ culture media for the detection of 2 12 20122 0 Salmonella 0 CHROMOGENICCHHROOMOG CANDIDA AGAR for the detection of clinically important Candida! 2 2 20002 2006 000 006 IMMUNOCROMATHOGRAPHICIM0MUNOCR TESTS SENECA [ the enumeration of E.coli + Enterobacteriaceae Some of our milestones INTERNATIONAL CATALOGUE PRODUCTS FOR MICROBIOLOGY IN VITRO DIAGNOSTICS Biolife Italiana S.r.l. Mascia Brunelli S.p.A. International Catalogue - Finito di stampare nel mese di ottobre 2017 presso INGRAF srl (MI) - Rev. 11/2017 Biolife - Mascia Brunelli International Catalogue Biolife Italiana S.r.l. and Mascia Brunelli Spa are two sisters companies belonging to the same Group, operating, since long time, in the fields of Microbiology, Immunological IVDs and Medical Devices. Biolife Italiana S.r.l. has a well-established reputation in the production of powdered and ready-to use culture media for microbiology, supplements and enrichments, kits and reagents for microbial identifi- cation. -
Shirleen Mari Theisinger
Bioaerosol Composition and Associated Hazards in a Prominent Fruit Beverage Production Facility by Shirleen Mari Theisinger Submitted in fulfilment of the requirements for the Degree Doctor of Philosophy: Environmental Health Centre for Applied Food Sustainability and Biotechnology (CAFSaB) Department of Life Sciences Faculty of Health and Environmental Sciences Central University of Technology, Free State BLOEMFONTEIN 2020 Dr O de Smidt (Promotor) Prof JFR Lues (Co-promotor) i © Central University of Technology, Free State Declaration I, Shirleen Mari Theisinger, Identity Number: , (Student Number: ), hereby declare that this research project, submitted to the Central University of Technology, Free State, for the Degree Doctor of Philosophy in Environmental Health, is my own independent work. This work complies with the code of Academic Integrity, as well as other relevant policies, procedures, rules and regulations of the Central University of Technology, Free State and has not been submitted before to any institution by myself or any other person for the attainment of qualification. ……………………………………. Shirleen Mari Theisinger 2020 I certify that the above statement is correct. …………………………………… Doctor O de Smidt (Promotor) ii © Central University of Technology, Free State Dedication I dedicate this thesis to my remarkable husband. Thank you for all your love, prayers and support. I am blessed with you in my life. iii © Central University of Technology, Free State Acknowledgements Praise and gratitude are due to Almighty God for His love and grace. I am sincerely grateful to my remarkable supervisor, Dr O. de Smidt (PhD), for her professional guidance, understanding, availability and supervision during this study and manuscript preparation. I also extend my gratitude to my co-supervisor, Prof. -
CGM-18-001 Perseus Report Update Bacterial Taxonomy Final Errata
report Update of the bacterial taxonomy in the classification lists of COGEM July 2018 COGEM Report CGM 2018-04 Patrick L.J. RÜDELSHEIM & Pascale VAN ROOIJ PERSEUS BVBA Ordering information COGEM report No CGM 2018-04 E-mail: [email protected] Phone: +31-30-274 2777 Postal address: Netherlands Commission on Genetic Modification (COGEM), P.O. Box 578, 3720 AN Bilthoven, The Netherlands Internet Download as pdf-file: http://www.cogem.net → publications → research reports When ordering this report (free of charge), please mention title and number. Advisory Committee The authors gratefully acknowledge the members of the Advisory Committee for the valuable discussions and patience. Chair: Prof. dr. J.P.M. van Putten (Chair of the Medical Veterinary subcommittee of COGEM, Utrecht University) Members: Prof. dr. J.E. Degener (Member of the Medical Veterinary subcommittee of COGEM, University Medical Centre Groningen) Prof. dr. ir. J.D. van Elsas (Member of the Agriculture subcommittee of COGEM, University of Groningen) Dr. Lisette van der Knaap (COGEM-secretariat) Astrid Schulting (COGEM-secretariat) Disclaimer This report was commissioned by COGEM. The contents of this publication are the sole responsibility of the authors and may in no way be taken to represent the views of COGEM. Dit rapport is samengesteld in opdracht van de COGEM. De meningen die in het rapport worden weergegeven, zijn die van de auteurs en weerspiegelen niet noodzakelijkerwijs de mening van de COGEM. 2 | 24 Foreword COGEM advises the Dutch government on classifications of bacteria, and publishes listings of pathogenic and non-pathogenic bacteria that are updated regularly. These lists of bacteria originate from 2011, when COGEM petitioned a research project to evaluate the classifications of bacteria in the former GMO regulation and to supplement this list with bacteria that have been classified by other governmental organizations.