The Growing Threat of Biological Weapons
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(Pasr) Bio 3R Project “Bioterrorism Resilience, Research, Reaction”
BIO3R Supporting Activity Title: Scenario Launching Report Id: <BIO3R reference> Version: 1.0 PREPARATORY ACTION IN SECURITY AND RESEEARCH (PASR) BIO 3R PROJECT “BIOTERRORISM RESILIENCE, RESEARCH, REACTION” OPERATIONAL REQUIREMENTS 1.1 GENERAL OPERATIONAL REQUIREMENTS The issues discussed hereafter are concerning the global response to BioT crises. They are relevant for all nine scenarios. 1.1.1 Crisis management at the national level Perception of the BioT risk in the different MSs The organisation of response to BioT events varies significantly between the MSs. Differences related to the political history, the economic development, or demography and geography could probably be addressed in a specific study. Major differences in the level of preparedness are also observed between SMs with similar economical, demographic and geographical constraints. The best prepared MSs have developed comprehensive global BioT plans, while others have only BioT plans restricted for example to protocols for the treatment of suspect parcels. It appears that the perception of the BioT risk differs significantly from one MS to another. The rationale for these differences is unclear. It deserves further analysis, as the harmonization and coordination of the response at the European level requires a consensus among MSs about the priorities in health security. “Natural” resilience of Public Health System The lack of global BioT emergency plans does not necessarily means that resilience will be low in any case. The general robustness of European medical care systems together with the plans already existing or specifically developed for the response to “naturally” occurring outbreaks or major national incident or international cooperation in major crisis may provide efficient response to several scenarios. -
Exploration of Plant-Microbe Interactions for Sustainable Agriculture in CRISPR Era
microorganisms Review Exploration of Plant-Microbe Interactions for Sustainable Agriculture in CRISPR Era 1, 1, 1,2, Rahul Mahadev Shelake y , Dibyajyoti Pramanik y and Jae-Yean Kim * 1 Division of Applied Life Science (BK21 Plus Program), Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju 660-701, Korea 2 Division of Life Science (CK1 Program), Gyeongsang National University, Jinju 660-701, Korea * Correspondence: [email protected] These authors contributed equally to this work. y Received: 19 July 2019; Accepted: 14 August 2019; Published: 17 August 2019 Abstract: Plants and microbes are co-evolved and interact with each other in nature. Plant-associated microbes, often referred to as plant microbiota, are an integral part of plant life. Depending on the health effects on hosts, plant–microbe (PM) interactions are either beneficial or harmful. The role of microbiota in plant growth promotion (PGP) and protection against various stresses is well known. Recently, our knowledge of community composition of plant microbiome and significant driving factors have significantly improved. So, the use of plant microbiome is a reliable approach for a next green revolution and to meet the global food demand in sustainable and eco-friendly agriculture. An application of the multifaceted PM interactions needs the use of novel tools to know critical genetic and molecular aspects. Recently discovered clustered regularly interspaced short palindromic repeats (CRISPR)/Cas-mediated genome editing (GE) tools are of great interest to explore PM interactions. A systematic understanding of the PM interactions will enable the application of GE tools to enhance the capacity of microbes or plants for agronomic trait improvement. -
Agricultural Bioterrorism
From the pages of Recent titles Agricultural Bioterrorism: A Federal Strategy to Meet the Threat Agricultural in the McNair MCNAIR PAPER 65 Bioterrorism: Paper series: A Federal Strategy to Meet the Threat 64 The United States ignores the The Strategic Implications of a Nuclear-Armed Iran Agricultural potential for agricultural bioter- Kori N. Schake and rorism at its peril. The relative Judith S. Yaphe Bioterrorism: ease of a catastrophic bio- weapons attack against the 63 A Federal Strategy American food and agriculture All Possible Wars? infrastructure, and the devastat- Toward a Consensus View of the Future Security to Meet the Threat ing economic and social conse- Environment, 2001–2025 quences of such an act, demand Sam J. Tangredi that the Nation pursue an aggres- sive, focused, coordinated, and 62 stand-alone national strategy to The Revenge of the Melians: Asymmetric combat agricultural bioterrorism. Threats and the Next QDR The strategy should build on Kenneth F. McKenzie, Jr. counterterrorism initiatives already underway; leverage exist- 61 ing Federal, state, and local pro- Illuminating HENRY S. PARKER grams and capabilities; and Tomorrow’s War Martin C. Libicki involve key customers, stake- PARKER holders, and partners. The U.S. 60 Department of Agriculture The Revolution in should lead the development of Military Affairs: this strategy. Allied Perspectives Robbin F. Laird and Holger H. Mey Institute for National Strategic Studies National Defense University About the Author NATIONAL DEFENSE UNIVERSITY President: Vice Admiral Paul G. Gaffney II, USN Henry S. Parker is National Program Leader for Aquaculture at the Vice President: Ambassador Robin Lynn Raphel Agricultural Research Service in the U.S. -
A Scoping Study of Emergency Planning and Management in Health Care: What Further Research Is Needed?
National Institute for Health Research Service Delivery and Organisation Programme A scoping study of emergency planning and management in health care: What further research is needed? Alan Boyd,1 Naomi Chambers,1 Simon French,1 Russell King,2 Duncan Shaw,3 and Alison Whitehead4 1 Manchester Business School 2 Royal Free London NHS Foundation Trust 3 Aston University Business School 4 Wrightington, Wigan and Leigh NHS Foundation Trust Published July 2012 This project is funded by the Service Delivery and Organisation Programme Address for correspondence: Alan Boyd Manchester Business School Booth Street West Manchester M15 6PB Email: [email protected] This report should be referenced as follows: Boyd A, Chambers N, French S, King RA, Shaw D, Whitehead AS. A scoping study of emergency planning and management in health care: What further research is needed? Final report. NIHR Health Services and Delivery Research programme; 2012. Relationship statement: This document is an output from a research project that was funded by the NIHR Service Delivery and Organisation (SDO) programme based at the National Institute for Health Research Evaluations, Trials and Studies Coordinating Centre (NETSCC) at the University of Southampton. The management of the project and subsequent editorial review of the final report was undertaken by the NIHR Service Delivery and Organisation (SDO) programme. From January 2012, the NIHR SDO programme merged with the NIHR Health Services Research (NIHR HSR) programme to establish the new NIHR Health Services and Delivery Research (NIHR HS&DR) programme. Should you have any queries please contact [email protected]. Copyright information: This report may be freely reproduced for the purposes of private research and study and extracts (or indeed, the full report) may be included in professional journals provided that suitable acknowledgement is made and the reproduction is not associated with any form of advertising. -
ECDC Insight Is a Newsletter Published by the European Cen- Tre for Disease Prevention and Control (ECDC), Stockholm
Insight www.ecdc.europa.eu Minister Ulla Schmidt & Director Zsuzsanna Jakab In this issue: present ECDC’s first report on communicable disease 1. Minister Ulla Schmidt epidemiology in the EU & Director Zsuzsanna Jakab present On 7 June 2007 Minister Ulla Schmidt, ropean data sets in order to maximise ECDC’s first report Germany’s Federal Minister for Health, the return on investment made by the on communicable and ECDC’s Director Zsuzsanna Jakab Member States and EU institutions. The disease epidemiology presented the first ever comprehensive report notes that important challenges in the EU report on the multiple threats posed by remain relating to disease surveillance. communicable diseases in the EU. The 2. Editorial by Director event took place at the European Cen- Zsuzsanna Jakab tre for Disease Prevention and Control (ECDC) in Stockholm and was organised Chikungunya fever: in partnership with the European Com- ECDC-led team visits mission and the German Presidency Italy of the EU. The report contains a large volume of epidemiological data on 49 ECDC external communicable diseases (together with evaluation launched healthcare-associated infections and antimicrobial resistance) collected from 3. Four European 25 Member States, Norway and Iceland networks’ for 2005. coordination activities to be The incidence of most of the diseases managed at ECDC looked at in the report has either fallen From right to left: German’s Health Minister Ulla Schmidt, or remained stable over the past decade. ECDC Director Zsuzsanna Jakab, Head of Health Threat Unit Evaluation and Not all the trends are positive though. John F. Ryan (EC, DG Sanco) and Ben Duncan (ECDC) assessment of EU- For example, incidence of campylobacter wide surveillance has risen in recent years. -
Transmission of Pathogens and Molecular Phylogenetics
WHO collaborating centre for Arbovirus and Hemorrhagic Fever Reference and Research Transmission of pathogens and molecular phylogenetics: From surveillance typing to metagenomics Prof Dr Marion Koopmans, public health virology [email protected]; eLibrary @MarionKoopmans © by author ESCMID eLibrary © by author Research focus: getting ahead of the curve ESCMIDKaresh et al., 2012 eLibrary © by author EID: the challenge . Most EID come from animals, . Once introduced in people, many but prediction of transmissibility opportunities for transmission: and severity are challenging . WHEN it occurs, things can move extremely fast ESCMIDWolfe et al., 2007; http://rambaut.github.io/EBOV_Visualization/Makona_1561_D3/; eLibrary Gytis et al., 2017 © by author Perspective: The use of pathogen genetic data that can inform (emerging) disease preparedness and response . What pathogens to track and how to do that efficiently? . role of metagenomics? . From genotype to phenotype: prediction of key parameters for hazard characterisation / decision making . Ability to infect humans and transmit between them . Ability to cause (severe) disease . Treatability . TrackingESCMID of sources and transmission eLibrary pathways © by author Choice of method and necessary resolution depends on question asked ICTV, increasingly uniform Family . Caliciviridae Genus . Norovirus (vesi-, sapo, ea) diagnosis tracking outbreak Species . Genogroup I, II, III, IV, V, VI, VII X Subgroup . Genotype GII.4, 40 genotypes (X) … . GII4: antigenic variant Sydney X … . Sequence type, SNP’s X X Specialists > Wide ESCMID diversity eLibrary © by author Choice of method and necessary resolution depends on question asked Family . Orthomyxoviridae Genus . Influenza A - Toghoto diagnosis tracking outbreak Species . Influenza A virus X Subgroup . Subtypes HA and NA X … . antigenic variants, host variants X X X … . -
Investigating the Biology of Plant Infection by Magnaporthe Oryza
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Fungal Molecular Plant-Microbe Interactions Plant Pathology Department 2009 Under Pressure: Investigating the Biology of Plant Infection by Magnaporthe oryza Nicholas J. Talbot University of Exeter, [email protected] Richard A. Wilson University of Nebraska - Lincoln, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/plantpathfungal Part of the Plant Pathology Commons Talbot, Nicholas J. and Wilson, Richard A., "Under Pressure: Investigating the Biology of Plant Infection by Magnaporthe oryza" (2009). Fungal Molecular Plant-Microbe Interactions. 7. https://digitalcommons.unl.edu/plantpathfungal/7 This Article is brought to you for free and open access by the Plant Pathology Department at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Fungal Molecular Plant- Microbe Interactions by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Published in Nature Reviews: Microbiology (March 2009) 7: 185-195. Copyright 2009, Macmillan. DOI: 10.1038/nrmicro2032. Used by permission. Reviews Under Pressure: Investigating the Biology of Plant Infection by Magnaporthe oryza Richard A. Wilson and Nicholas J. Talbot School of Biosciences, University of Exeter, Exeter, United Kingdom; correspondence to [email protected] Wilson, affiliation 2012: University of Nebraska-Lincoln, Lincoln, Nebraska, U.S.A.; [email protected] Abstract The filamentous fungus Magnaporthe oryzae causes rice blast, the most serious disease of cultivated rice. Cellular differentia- tion of M. oryzae forms an infection structure called the appressorium, which generates enormous cellular turgor that is suffi- cient to rupture the plant cuticle. Here, we show how functional genomics approaches are providing new insight into the ge- netic control of plant infection by M. -
Streptomyces with Antifungal Activity Against Rice Blast Causing Fungus, Magnaporthe Grisea
J. Microbiol. Biotechnol. (2002), 12(6), 1026–1028 Streptomyces with Antifungal Activity Against Rice Blast Causing Fungus, Magnaporthe grisea LEE, CHUL-HOON2, BUM-JOON KIM3, GYUNG JA CHOI4, KWANG YUN CHO4, HEEJUNG YANG1, 1 1 1 CHOONSHIK SHIN ,SHINYOUNG MIN , AND YOONGHO LIM 1Bio/Molecular Informatics Center, Konkuk University, Seoul 143-701, Korea 2Department of Medical Genetics & Institute of Biomedical Science, College of Medicine, Hanyang University, Seoul 133-791, Korea 3Medical School, Cheju National University, Jeju 690-756, Korea 4Screening Division, Korea Research Institute of Chemical Technology, Daejon 305-600, Korea Received: November 5, 2002 Accepted: November 26, 2002 Abstract Screening tests against fungus causing rice blast, samples were collected during 2001 at several sites near Magnaporthe grisea, were performed in order to develop Hanla Mountain, on Jeju Island, Korea. Samples were used biopesticides. More than 400 actinomycetes collected at several as substrates for isolation of actinomycetes that exhibited sites near Hanla Mountain on Jeju Island, Korea were tested, antifungal activities. The isolation medium was starch- and strain BG2-53 showed potent antifungal activity. The casein agar. Autoclaved cyclohexamide was added to the in vivo screening was performed with fermentation broth, and isolation medium (50 µg/ml) for inhibition of fungal growth, the strain taxon was identified. and sterilized heat-labile nystatin (50 µg/ml) was also added. Key words: In vivo antifungal activities, Magnaporthe grisea, The final pH of the medium for isolation of actinomycetes rice blast, Streptomyces was adjusted to 7.0- 7.2. Approximately 1 g of soil was ground in a petri dish and heated at 60oC for 90 min in a drying oven. -
Pandemic Influenza Preparedness Planning
Pandemic influenza preparedness planning Report on a joint WHO/European Commission workshop Luxembourg, 2–3 March 2005 European Commission Keywords INFLUENZA – prevention and control INFLUENZA, AVIAN – prevention and control DISEASE OUTBREAKS – prevention and control HEALTH PLANNING GUIDELINES NATIONAL HEALTH PROGRAMS REGIONAL HEALTH PLANNING INTERNATIONAL COOPERATION EMERGENCIES VACCINES EUROPE Address requests about publications of the WHO Regional Office to: • by e-mail [email protected] (for copies of publications) [email protected] (for permission to reproduce them) [email protected] (for permission to translate them) • by post Publications WHO Regional Office for Europe Scherfigsvej 8 DK-2100 Copenhagen Ø, Denmark © World Health Organization 2005 All rights reserved. The Regional Office for Europe of the World Health Organization welcomes requests for permission to reproduce or translate its publications, in part or in full. The designations employed and the presentation of the material in this publication do not imply the expression of any opinion whatsoever on the part of the World Health Organization concerning the legal status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries. Where the designation “country or area” appears in the headings of tables, it covers countries, territories, cities, or areas. Dotted lines on maps represent approximate border lines for which there may not yet be full agreement. The mention of specific companies or of certain manufacturers’ products does not imply that they are endorsed or recommended by the World Health Organization in preference to others of a similar nature that are not mentioned. Errors and omissions excepted, the names of proprietary products are distinguished by initial capital letters. -
Enhanced Disease Resistance Conferred by Expression of An
Enhanced resistance to the rice blast fungus Magnaporthe grisea conferred by expression of a cecropin A gene in transgenic rice María Coca1, Gisela Peñas2, Jorge Gómez1, Sonia Campo1, Cristina Bortolotti1, Joaquima Messeguer2 and Blanca San Segundo1. Laboratorio de Genética Molecular Vegetal, Consorcio CSIC-IRTA; 1Departamento de Genética Molecular, Instituto de Biología Molecular de Barcelona, CSIC. Jordi Girona 18, 08034 Barcelona, Spain; 2Departamento de Genética Vegetal, IRTA Centro de Cabrils. Carretera de Cabrils s/n, Cabrils 08348, Barcelona, Spain Corresponding author: María Coca E-mail: [email protected] Tel: 34934006128 FAX: 34932045904 1 Abstract Cecropins are a family of antimicrobial peptides which constitute an important key component of the immune response in insects. Here, we demonstrate that transgenic rice (Oryza sativa L.) plants expressing the cecropin A gene from the giant silk moth Hyalophora cecropia show enhanced resistance to Magnaporthe grisea, the causal agent of the rice blast disease. Two plant codon-optimized synthetic cecropin A genes which were designed either to retain the cecropin A peptide in the endoplasmic reticulum, the ER-CecA gene, or to secrete cecropin A to the extracellular space, the Ap- CecA gene, were prepared. Both cecropin A genes were efficiently expressed in transgenic rice. The inhibitory activity of protein extracts prepared from leaves of cecropin A-expressing plants on the in vitro growth of M. grisea indicated that the cecropin A protein produced by the transgenic rice plants was biologically active. Whereas no effect on plant phenotype was observed in ER-CecA plants, most of the rice lines expressing the Ap-CecA gene were non fertile. -
ECDC ESCAIDE Abstract Book
th Anniversary 5 Respiratory diseases h water outbreaks food studies modelling STI vaccine care tuberculosis resistance a hiv health water-borne s preventable s zoonoses surveillancetopic ou or molecular influenza Resp fi elds vector ethods novel investigations appraoches demology diseases ABSTRACT water care vaccine BOOK ethodological health cell European Scientifi c Conference on Applied Infectious Disease Epidemiology WATERFRONT CONGRESS CENTRE 6–8 NOVEMBER 2011, STOCKHOLM www.escaide.eu EUROPEAN CENTRE FOR DISEASE PREVENTION AND CONTROL The conference is sponsored by ECDC (European Centre for Disease Prevention and Control) and jointly organised by ECDC, EPIET (European Programme for Intervention Epidemiology), EAN (EPIET Alumni Network), TEPHINET EUROPE (Training Programs in Epidemiology and Public Health Interventions NETwork) 1 TABLE OF CONTENTS SCIENTIFIC COMMITTEE 4 ABSTRACT REVIEWERS 6 PLENARY SESSION SPEAKER ABSTRACTS 9 Keynote Plenary Session: Control of infectious diseases in complex emergency situations 10 B. Parasitic infections of increasing relevance for Europe 11 C. The Hospital as an infectious disease amplifier 12 D. Enhancing health and health equality through vaccination programmes 14 PLENARY SESSION SPEAKERS 16 PARALLEL SESSION ABSTRACTS 21 01. Antimicrobial resistance/Health Care Associated Infection 22 02. Contribution of modeling to applied epidemiology 24 03. Food- and water-borne diseases 27 04. Outbreaks 1 29 05. Vector Borne Disease 31 06. HIV – STI 33 07. Travel and mass gathering 36 08. Influenza 38 09. International Health 40 10. Migration and population movement 43 11. Vaccine uptake/coverage 45 12. Novel methodology in outbreak investigation, risk assessment and communication 48 13. From outbreak investigation to policy changes 50 14. Outbreak 2 53 15. -
In Coxiella Burnetii: Implications for Protein and Small RNA Evolution Shaun Wachter1, Rahul Raghavan2, Jenny Wachter3 and Michael F
Wachter et al. BMC Genomics (2018) 19:247 https://doi.org/10.1186/s12864-018-4608-y RESEARCH ARTICLE Open Access Identification of novel MITEs (miniature inverted-repeat transposable elements) in Coxiella burnetii: implications for protein and small RNA evolution Shaun Wachter1, Rahul Raghavan2, Jenny Wachter3 and Michael F. Minnick1* Abstract Background: Coxiella burnetii is a Gram-negative gammaproteobacterium and zoonotic agent of Q fever. C. burnetii’s genome contains an abundance of pseudogenes and numerous selfish genetic elements. MITEs (miniature inverted- repeat transposable elements) are non-autonomous transposons that occur in all domains of life and are thought to be insertion sequences (ISs) that have lost their transposase function. Like most transposable elements (TEs), MITEs are thought to play an active role in evolution by altering gene function and expression through insertion and deletion activities. However, information regarding bacterial MITEs is limited. Results: We describe two MITE families discovered during research on small non-coding RNAs (sRNAs) of C. burnetii. Two sRNAs, Cbsr3 and Cbsr13, were found to originate from a novel MITE family, termed QMITE1. Another sRNA, CbsR16, was found to originate from a separate and novel MITE family, termed QMITE2. Members of each family occur ~ 50 times within the strains evaluated. QMITE1 is a typical MITE of 300-400 bp with short (2-3 nt) direct repeats (DRs) of variable sequence and is often found overlapping annotated open reading frames (ORFs). Additionally, QMITE1 elements possess sigma-70 promoters and are transcriptionally active at several loci, potentially influencing expression of nearby genes. QMITE2 is smaller (150-190 bps), but has longer (7-11 nt) DRs of variable sequences and is mainly found in the 3′ untranslated region of annotated ORFs and intergenic regions.