Wheat Blast: a New Threat to Food Security M
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Exploration of Plant-Microbe Interactions for Sustainable Agriculture in CRISPR Era
microorganisms Review Exploration of Plant-Microbe Interactions for Sustainable Agriculture in CRISPR Era 1, 1, 1,2, Rahul Mahadev Shelake y , Dibyajyoti Pramanik y and Jae-Yean Kim * 1 Division of Applied Life Science (BK21 Plus Program), Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju 660-701, Korea 2 Division of Life Science (CK1 Program), Gyeongsang National University, Jinju 660-701, Korea * Correspondence: [email protected] These authors contributed equally to this work. y Received: 19 July 2019; Accepted: 14 August 2019; Published: 17 August 2019 Abstract: Plants and microbes are co-evolved and interact with each other in nature. Plant-associated microbes, often referred to as plant microbiota, are an integral part of plant life. Depending on the health effects on hosts, plant–microbe (PM) interactions are either beneficial or harmful. The role of microbiota in plant growth promotion (PGP) and protection against various stresses is well known. Recently, our knowledge of community composition of plant microbiome and significant driving factors have significantly improved. So, the use of plant microbiome is a reliable approach for a next green revolution and to meet the global food demand in sustainable and eco-friendly agriculture. An application of the multifaceted PM interactions needs the use of novel tools to know critical genetic and molecular aspects. Recently discovered clustered regularly interspaced short palindromic repeats (CRISPR)/Cas-mediated genome editing (GE) tools are of great interest to explore PM interactions. A systematic understanding of the PM interactions will enable the application of GE tools to enhance the capacity of microbes or plants for agronomic trait improvement. -
Agricultural Bioterrorism
From the pages of Recent titles Agricultural Bioterrorism: A Federal Strategy to Meet the Threat Agricultural in the McNair MCNAIR PAPER 65 Bioterrorism: Paper series: A Federal Strategy to Meet the Threat 64 The United States ignores the The Strategic Implications of a Nuclear-Armed Iran Agricultural potential for agricultural bioter- Kori N. Schake and rorism at its peril. The relative Judith S. Yaphe Bioterrorism: ease of a catastrophic bio- weapons attack against the 63 A Federal Strategy American food and agriculture All Possible Wars? infrastructure, and the devastat- Toward a Consensus View of the Future Security to Meet the Threat ing economic and social conse- Environment, 2001–2025 quences of such an act, demand Sam J. Tangredi that the Nation pursue an aggres- sive, focused, coordinated, and 62 stand-alone national strategy to The Revenge of the Melians: Asymmetric combat agricultural bioterrorism. Threats and the Next QDR The strategy should build on Kenneth F. McKenzie, Jr. counterterrorism initiatives already underway; leverage exist- 61 ing Federal, state, and local pro- Illuminating HENRY S. PARKER grams and capabilities; and Tomorrow’s War Martin C. Libicki involve key customers, stake- PARKER holders, and partners. The U.S. 60 Department of Agriculture The Revolution in should lead the development of Military Affairs: this strategy. Allied Perspectives Robbin F. Laird and Holger H. Mey Institute for National Strategic Studies National Defense University About the Author NATIONAL DEFENSE UNIVERSITY President: Vice Admiral Paul G. Gaffney II, USN Henry S. Parker is National Program Leader for Aquaculture at the Vice President: Ambassador Robin Lynn Raphel Agricultural Research Service in the U.S. -
Investigating the Biology of Plant Infection by Magnaporthe Oryza
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Fungal Molecular Plant-Microbe Interactions Plant Pathology Department 2009 Under Pressure: Investigating the Biology of Plant Infection by Magnaporthe oryza Nicholas J. Talbot University of Exeter, [email protected] Richard A. Wilson University of Nebraska - Lincoln, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/plantpathfungal Part of the Plant Pathology Commons Talbot, Nicholas J. and Wilson, Richard A., "Under Pressure: Investigating the Biology of Plant Infection by Magnaporthe oryza" (2009). Fungal Molecular Plant-Microbe Interactions. 7. https://digitalcommons.unl.edu/plantpathfungal/7 This Article is brought to you for free and open access by the Plant Pathology Department at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Fungal Molecular Plant- Microbe Interactions by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Published in Nature Reviews: Microbiology (March 2009) 7: 185-195. Copyright 2009, Macmillan. DOI: 10.1038/nrmicro2032. Used by permission. Reviews Under Pressure: Investigating the Biology of Plant Infection by Magnaporthe oryza Richard A. Wilson and Nicholas J. Talbot School of Biosciences, University of Exeter, Exeter, United Kingdom; correspondence to [email protected] Wilson, affiliation 2012: University of Nebraska-Lincoln, Lincoln, Nebraska, U.S.A.; [email protected] Abstract The filamentous fungus Magnaporthe oryzae causes rice blast, the most serious disease of cultivated rice. Cellular differentia- tion of M. oryzae forms an infection structure called the appressorium, which generates enormous cellular turgor that is suffi- cient to rupture the plant cuticle. Here, we show how functional genomics approaches are providing new insight into the ge- netic control of plant infection by M. -
Streptomyces with Antifungal Activity Against Rice Blast Causing Fungus, Magnaporthe Grisea
J. Microbiol. Biotechnol. (2002), 12(6), 1026–1028 Streptomyces with Antifungal Activity Against Rice Blast Causing Fungus, Magnaporthe grisea LEE, CHUL-HOON2, BUM-JOON KIM3, GYUNG JA CHOI4, KWANG YUN CHO4, HEEJUNG YANG1, 1 1 1 CHOONSHIK SHIN ,SHINYOUNG MIN , AND YOONGHO LIM 1Bio/Molecular Informatics Center, Konkuk University, Seoul 143-701, Korea 2Department of Medical Genetics & Institute of Biomedical Science, College of Medicine, Hanyang University, Seoul 133-791, Korea 3Medical School, Cheju National University, Jeju 690-756, Korea 4Screening Division, Korea Research Institute of Chemical Technology, Daejon 305-600, Korea Received: November 5, 2002 Accepted: November 26, 2002 Abstract Screening tests against fungus causing rice blast, samples were collected during 2001 at several sites near Magnaporthe grisea, were performed in order to develop Hanla Mountain, on Jeju Island, Korea. Samples were used biopesticides. More than 400 actinomycetes collected at several as substrates for isolation of actinomycetes that exhibited sites near Hanla Mountain on Jeju Island, Korea were tested, antifungal activities. The isolation medium was starch- and strain BG2-53 showed potent antifungal activity. The casein agar. Autoclaved cyclohexamide was added to the in vivo screening was performed with fermentation broth, and isolation medium (50 µg/ml) for inhibition of fungal growth, the strain taxon was identified. and sterilized heat-labile nystatin (50 µg/ml) was also added. Key words: In vivo antifungal activities, Magnaporthe grisea, The final pH of the medium for isolation of actinomycetes rice blast, Streptomyces was adjusted to 7.0- 7.2. Approximately 1 g of soil was ground in a petri dish and heated at 60oC for 90 min in a drying oven. -
The Growing Threat of Biological Weapons
A reprint from American Scientist the magazine of Sigma Xi, The Scientific Research Society This reprint is provided for personal and noncommercial use. For any other use, please send a request to Permissions, American Scientist, P.O. Box 13975, Research Triangle Park, NC, 27709, U.S.A., or by electronic mail to [email protected]. ©Sigma Xi, The Scientific Research Society and other rightsholders The Growing Threat of Biological Weapons The terrorist threat is very real, and it’s about to get worse. Scientists should concern themselves before it’s too late Steven M. Block or half a century, America has par- cal development and use of biological um (Bacillus anthracis). Pasteur devel- F ticipated with the world’s nuclear weapons, as well as some recent trends oped the first animal vaccine against powers in an uneasy standoff of mutu- in their evolution and the prospects for anthrax, which, together with Lister’s ally assured destruction. Despite the containing their proliferation. ideas about antiseptic precautions, seemingly relentless proliferation of nu- helped turn the tide against outbreaks clear arms, there’s reason to hope that The Plague and Anthrax of the disease. some version of the current stalemate Biological warfare is not a new phe- Anthrax is only weakly communica- will continue to hold. Against this back- nomenon. The ancient Romans, and ble in humans and rarely causes dis- drop, terrorist factions and “nations of others before them, threw carrion into ease, unless the bacterium comes into concern” (the current government eu- wells to poison their adversaries’ contact with the bloodstream through a phemism for rogue states) have sought drinking water. -
Enhanced Disease Resistance Conferred by Expression of An
Enhanced resistance to the rice blast fungus Magnaporthe grisea conferred by expression of a cecropin A gene in transgenic rice María Coca1, Gisela Peñas2, Jorge Gómez1, Sonia Campo1, Cristina Bortolotti1, Joaquima Messeguer2 and Blanca San Segundo1. Laboratorio de Genética Molecular Vegetal, Consorcio CSIC-IRTA; 1Departamento de Genética Molecular, Instituto de Biología Molecular de Barcelona, CSIC. Jordi Girona 18, 08034 Barcelona, Spain; 2Departamento de Genética Vegetal, IRTA Centro de Cabrils. Carretera de Cabrils s/n, Cabrils 08348, Barcelona, Spain Corresponding author: María Coca E-mail: [email protected] Tel: 34934006128 FAX: 34932045904 1 Abstract Cecropins are a family of antimicrobial peptides which constitute an important key component of the immune response in insects. Here, we demonstrate that transgenic rice (Oryza sativa L.) plants expressing the cecropin A gene from the giant silk moth Hyalophora cecropia show enhanced resistance to Magnaporthe grisea, the causal agent of the rice blast disease. Two plant codon-optimized synthetic cecropin A genes which were designed either to retain the cecropin A peptide in the endoplasmic reticulum, the ER-CecA gene, or to secrete cecropin A to the extracellular space, the Ap- CecA gene, were prepared. Both cecropin A genes were efficiently expressed in transgenic rice. The inhibitory activity of protein extracts prepared from leaves of cecropin A-expressing plants on the in vitro growth of M. grisea indicated that the cecropin A protein produced by the transgenic rice plants was biologically active. Whereas no effect on plant phenotype was observed in ER-CecA plants, most of the rice lines expressing the Ap-CecA gene were non fertile. -
In Coxiella Burnetii: Implications for Protein and Small RNA Evolution Shaun Wachter1, Rahul Raghavan2, Jenny Wachter3 and Michael F
Wachter et al. BMC Genomics (2018) 19:247 https://doi.org/10.1186/s12864-018-4608-y RESEARCH ARTICLE Open Access Identification of novel MITEs (miniature inverted-repeat transposable elements) in Coxiella burnetii: implications for protein and small RNA evolution Shaun Wachter1, Rahul Raghavan2, Jenny Wachter3 and Michael F. Minnick1* Abstract Background: Coxiella burnetii is a Gram-negative gammaproteobacterium and zoonotic agent of Q fever. C. burnetii’s genome contains an abundance of pseudogenes and numerous selfish genetic elements. MITEs (miniature inverted- repeat transposable elements) are non-autonomous transposons that occur in all domains of life and are thought to be insertion sequences (ISs) that have lost their transposase function. Like most transposable elements (TEs), MITEs are thought to play an active role in evolution by altering gene function and expression through insertion and deletion activities. However, information regarding bacterial MITEs is limited. Results: We describe two MITE families discovered during research on small non-coding RNAs (sRNAs) of C. burnetii. Two sRNAs, Cbsr3 and Cbsr13, were found to originate from a novel MITE family, termed QMITE1. Another sRNA, CbsR16, was found to originate from a separate and novel MITE family, termed QMITE2. Members of each family occur ~ 50 times within the strains evaluated. QMITE1 is a typical MITE of 300-400 bp with short (2-3 nt) direct repeats (DRs) of variable sequence and is often found overlapping annotated open reading frames (ORFs). Additionally, QMITE1 elements possess sigma-70 promoters and are transcriptionally active at several loci, potentially influencing expression of nearby genes. QMITE2 is smaller (150-190 bps), but has longer (7-11 nt) DRs of variable sequences and is mainly found in the 3′ untranslated region of annotated ORFs and intergenic regions. -
Genotypic and Phenotypic Diversity of Pyricularia Oryzae in the Contemporary Rice Blast Pathogen Population in Arkansas Lu Zhai University of Arkansas, Fayetteville
University of Arkansas, Fayetteville ScholarWorks@UARK Theses and Dissertations 5-2012 Genotypic and Phenotypic Diversity of Pyricularia Oryzae in the Contemporary Rice Blast Pathogen Population in Arkansas Lu Zhai University of Arkansas, Fayetteville Follow this and additional works at: http://scholarworks.uark.edu/etd Part of the Plant Pathology Commons Recommended Citation Zhai, Lu, "Genotypic and Phenotypic Diversity of Pyricularia Oryzae in the Contemporary Rice Blast Pathogen Population in Arkansas" (2012). Theses and Dissertations. 408. http://scholarworks.uark.edu/etd/408 This Thesis is brought to you for free and open access by ScholarWorks@UARK. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of ScholarWorks@UARK. For more information, please contact [email protected], [email protected]. GENOTYPIC AND PHENOTYPIC DIVERSITY OF PYRICULARIA ORYZAE IN THE CONTEMPORARY RICE BLAST PATHOGEN POPULATION IN ARKANSAS GENOTYPIC AND PHENOTYPIC DIVERSITY OF PYRICULARIA ORYZAE IN THE CONTEMPORARY RICE BLAST PATHOGEN POPULATION IN ARKANSAS A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science in Plant Pathology By Lu Zhai South China Agricultural University Bachelor of Science in Plant Protection, 2009 May 2012 University of Arkansas ABSTRACT Rice blast, caused by Pyricularia oryzae (teleomorph: Magnaporthe grisea), is one of the most economically important diseases of rice worldwide, including Arkansas. Rice blast has been severe the past few years on conventional cultivars and, more recently, has been observed on hybrid rice cultivars. The first objective of the current research was to examine the genotypic and phenotypic variation in the P. oryzae population in Arkansas during the 2009, 2010, and 2011 growing seasons and compare isolates from conventional cultivars with those from and hybrids. -
Secondary Metabolites of the Rice Blast Fungus Pyricularia Oryzae: Biosynthesis and Biological Function
International Journal of Molecular Sciences Review Secondary Metabolites of the Rice Blast Fungus Pyricularia oryzae: Biosynthesis and Biological Function Takayuki Motoyama Chemical Biology Research Group, RIKEN CSRS, Wako, Saitama 351-0198, Japan; [email protected] Received: 31 August 2020; Accepted: 17 November 2020; Published: 18 November 2020 Abstract: Plant pathogenic fungi produce a wide variety of secondary metabolites with unique and complex structures. However, most fungal secondary metabolism genes are poorly expressed under laboratory conditions. Moreover, the relationship between pathogenicity and secondary metabolites remains unclear. To activate silent gene clusters in fungi, successful approaches such as epigenetic control, promoter exchange, and heterologous expression have been reported. Pyricularia oryzae, a well-characterized plant pathogenic fungus, is the causal pathogen of rice blast disease. P. oryzae is also rich in secondary metabolism genes. However, biosynthetic genes for only four groups of secondary metabolites have been well characterized in this fungus. Biosynthetic genes for two of the four groups of secondary metabolites have been identified by activating secondary metabolism. This review focuses on the biosynthesis and roles of the four groups of secondary metabolites produced by P. oryzae. These secondary metabolites include melanin, a polyketide compound required for rice infection; pyriculols, phytotoxic polyketide compounds; nectriapyrones, antibacterial polyketide compounds produced mainly by symbiotic fungi including endophytes and plant pathogens; and tenuazonic acid, a well-known mycotoxin produced by various plant pathogenic fungi and biosynthesized by a unique NRPS-PKS enzyme. Keywords: plant pathogenic fungus; Magnaporthe oryzae; secondary metabolite biosynthetic gene cluster; biological function 1. Introduction Filamentous fungi, including plant pathogenic fungi, produce a wide variety of secondary metabolites with unique and complex structures. -
Effector Gene Reshuffling Involves Dispensable Mini-Chromosomes in the Wheat Blast Fungus
RESEARCH ARTICLE Effector gene reshuffling involves dispensable mini-chromosomes in the wheat blast fungus 1,2☯ 1☯¤a 1 1¤b 1 Zhao PengID , Ely Oliveira-Garcia , Guifang LinID , Ying HuID , Melinda Dalby , 1¤c 3 4 1 2 Pierre MigeonID , Haibao TangID , Mark Farman , David CookID , Frank F. White , 1 1 Barbara ValentID *, Sanzhen LiuID * 1 Department of Plant Pathology, Kansas State University, Manhattan, KS, United States of America, 2 Department of Plant Pathology, University of Florida, Gainesville, FL, United States of America, 3 Center for Genomics and Biotechnology and Fujian Provincial Key Laboratory of Haixia Applied Plant Systems a1111111111 Biology, Fujian Agriculture and Forestry University, Fujian, China, 4 Department of Plant Pathology, a1111111111 University of Kentucky, Lexington, KY, United States of America a1111111111 ☯ These authors contributed equally to this work. a1111111111 ¤a Current address: Department of Plant Pathology and Crop Physiology, Louisiana State University, Baton a1111111111 Rouge, LA, United States of America ¤b Current address: Horticultural Sciences Department, University of Florida, Gainesville, FL, United States of America ¤c Current address: 42 Silicon Valley, Fremont, CA, United States of America * [email protected] (BV); [email protected] (SL) OPEN ACCESS Citation: Peng Z, Oliveira-Garcia E, Lin G, Hu Y, Dalby M, Migeon P, et al. (2019) Effector gene Abstract reshuffling involves dispensable mini- Newly emerged wheat blast disease is a serious threat to global wheat production. Wheat chromosomes in the wheat blast fungus. PLoS Genet 15(9): e1008272. https://doi.org/10.1371/ blast is caused by a distinct, exceptionally diverse lineage of the fungus causing rice blast journal.pgen.1008272 disease. -
The Genome Sequence of the Rice Blast Fungus Magnaporthe Grisea
articles The genome sequence of the rice blast fungus Magnaporthe grisea Ralph A. Dean1, Nicholas J. Talbot2, Daniel J. Ebbole3, Mark L. Farman4, Thomas K. Mitchell1, Marc J. Orbach5, Michael Thon3, Resham Kulkarni1*, Jin-Rong Xu6, Huaqin Pan1, Nick D. Read7, Yong-Hwan Lee8, Ignazio Carbone1, Doug Brown1, Yeon Yee Oh1, Nicole Donofrio1, Jun Seop Jeong1, Darren M. Soanes2, Slavica Djonovic3, Elena Kolomiets3, Cathryn Rehmeyer4, Weixi Li4, Michael Harding5, Soonok Kim8, Marc-Henri Lebrun9, Heidi Bohnert9, Sean Coughlan10, Jonathan Butler11, Sarah Calvo11, Li-Jun Ma11, Robert Nicol11, Seth Purcell11, Chad Nusbaum11, James E. Galagan11 & Bruce W. Birren11 1Center for Integrated Fungal Research, North Carolina State University, Raleigh, North Carolina 27695, USA 2School of Biological and Chemical Sciences, University of Exeter, Washington Singer Laboratories, Exeter EX4 4QG, UK 3Department of Plant Pathology and Microbiology, Texas A&M University, College Station, Texas 77843, USA 4Department of Plant Pathology, University of Kentucky, Lexington, Kentucky 40546, USA 5Department of Plant Pathology, University of Arizona, Tucson, Arizona 85721, USA 6Department of Botany and Plant Pathology, Purdue University, West Lafayette, Indiana 47907, USA 7Institute of Cell and Molecular Biology, University of Edinburgh, Edinburgh EH9 3JH, UK 8School of Agricultural Biotechnology, Seoul National University, Seoul 151-742, Korea 9FRE2579 CNRS-Bayer, Bayer Cropscience, 69263 Lyon Cedex 09, France 10Agilent Technologies, Wilmington, Delaware 19808, USA 11Broad -
Agroterrorismfuture Warfare Series: National No
AgroterrorismFuture Warfare Series: National No. 10203040 DefendingAvoidingTheThe “WorriedDefenseAnthrax thePanic American Assessment,Vaccine Well”and Keeping Response Debate: Homeland the A MedicalPortsStrategies, Opento Review CBRN1993-2003 inand a Events:forChemical Capabilities Commanders and BiologicalAnalysis Threat and Solu�onsEnvironment A Literature Review Edited by: TanjaLieutenantRandallMajor M. Korpi Mr.J.Richard ColonelLarsen Albertand A.Christopherand Fred MauroniHersack, Patrick P. Stone, USAF D.Hemmer EllisUSAF Dr. Robert A. Norton United States Air Force Center for Strategic Deterrence Studies 30204010 Maxwell Air Force Base, Alabama Agroterrorism: National Defense Assessment, Strategies, and Capabilities Edited by Mr. Albert Mauroni Dr. Robert A. Norton August 2020 U.S. Air Force Center for Strategic Deterrence Studies Air University Maxwell Air Force Base, Alabama 36112 Table of Contents Chapter Page Disclaimer.……………………………….…….…….…….….……….…………iii Preface…………………………………….……………….….……….…………iv About the Authors……………………………….………….….…………………vi Chapter 1. Introduction Albert Mauroni.………………….……………….…………….…………………1 Chapter 2. Agroterrorism Perspectives Reid Kirby and Dr. Seth Carus ……………………………….……….….………5 Chapter 3. The Mindset of a Terrorist Dr. Terry Oroszi and Dr. David Ellis ……………………….…….….….………29 Chapter 4. Response to Agroterrorism by Foreign Animal Disease Major Kelley J. Williams and Steven A. Schmitt …………….…………………43 Chapter 5. U.S. Federal Policies and Programs to Combat Agroterrorism Henry Parker and Janet Marroquin ……………….…….……….………………57 Chapter 6. Organoleptic Assessments as a Tool for Food Defense Chemical Threat Prioritization Dr. Nathaniel C. Rice and Dr. Todd M. Myers ……………...……….…………97 Chapter 7. Air Force Capabilities and Technologies to Counter or Mitigate Agroterrorism William Greer and Dr. Douglas Lewis …….………………………….….……129 Chapter 8. Agroterrorism Policy Col. (Dr.) Oliver J. Wisco and Paul Imbriano ………..………………….….…153 Chapter 9. Agroterrorism by Other Means: The Interconnectivity of Critical Infrastructures Dr.