Triticeae Biodiversity and Conservation, a “Genebanker” View
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Registration of the Triticeae-CAP Spring Wheat Nested Association Mapping Population
Published February 28, 2019 JOURNAL OF PLANT REGISTRATIONS MAPPING POPULATION Registration of the Triticeae-CAP Spring Wheat Nested Association Mapping Population N. K. Blake, M. Pumphrey, K. Glover, S. Chao, K. Jordan, J.-L. Jannick, E. A. Akhunov, J. Dubcovsky, H. Bockelman, and L. E. Talbert* Abstract andrace accessions of wheat (Triticum aestivum The Triticeae-CAP spring wheat nested association mapping L.) are a potentially important resource for superior population (Reg. No. MP-10, NSL 527060 MAP) consisting of genes to improve modern wheat cultivars. The landrace recombinant inbred line (RIL) populations derived from 32 Laccessions themselves are typically inferior to modern cultivars spring wheat (Triticum aestivum L.) accessions each crossed to for both agronomic and quality characteristics. This is particu- a common spring wheat parent, ‘Berkut’, has been released. larly true when landraces from one region are grown in a differ- The spring wheat accessions consisted of 29 landraces and ent locale in that important alleles for adaptation to biotic and three cultivars. Each population consists of approximately 75 abiotic factors are lacking. A challenge for breeders is that supe- lines for a total of 2325 RILs (Reg. Nos. GSTR No. 14701–GSTR 17133). The RILs have all been genotyped with the Illumina rior alleles are difficult to detect in a background of undesir- wheat iSelect 90K single nucleotide polymorphism array able alleles that typify the landraces. The increased efficiency of using the Infinium assay method and through genotype-by- modern genotyping capabilities has provided an opportunity to sequencing. This nested association mapping population identify superior alleles from nonadapted germplasm for incor- provides a genotyped germplasm resource for the wheat poration into elite breeding material. -
Taxonomy and Phylogeny in Triticeae: a Historical Review and Current Status
Advances in Plants & Agriculture Research Review Article Open Access Taxonomy and phylogeny in Triticeae: a historical review and current status Abstract Volume 3 Issue 5 - 2016 The Triticeae is an economically important tribe within the Poaceae. Because a number of cereal crops and forage grasses belong to the tribe it has attracted much scientific Mohannad G Al–Saghir attention covering many species: taxonomy, phylogeny, genetics, cytogenetic, genome Department of Environmental and Plant Biology, Ohio analyses (crossing ability and chromosome pairing), isoenzymes, molecular biology University, USA (RFLP, RAPD, PCR sequencing) and breeding. This paper contains a brief historical outline of the taxonomy of the tribe. Phylogenetic hypotheses regarding this tribe Correspondence: Mohannad G Al–Saghir, Department of inferred from different methods, techniques and approaches, are reviewed. The Environmental and Plant Biology, Ohio University, Zanesville, different phylogenies are discussed and compared and conflicts are elucidated. Ohio, USA, Email al–[email protected] Keywords: triticeae, phylogeny, taxonomy, poaceae, perennial species, durum Received: April 23, 2016 | Published: May 10, 2016 wheat, phylogenies, genetic diversity, cytogenetics, molecular biology, chromosomes, perennial, caespitose, thizomatous species Introduction as cited above. We can therefore conclude that the most appropriate outgroup for the tribe will be Bromus. The tribe Triticeae Dum is economically the most important tribe in the grass family (Poaceae). It encompasses between 350 and 500 Definition annual or perennial species,1–3 including the important cereal crops wheat (Triticum aestivium L.), durum wheat (T. turgidum sup. durum The Triticeae encompasses annual and perennial, caespitose or (Desf. MacKay) barley (Hordeum vulgare L.), rye (Secale cereal L.) thizomatous species. -
Molecular Analyses of the Genera Eremopyrum (Ledeb.) Jaub
Pak. J. Bot., 46(3): 769-774, 2014. MOLECULAR ANALYSES OF THE GENERA EREMOPYRUM (LEDEB.) JAUB. & SPACH AND AGROPYRON GAERTNER (POACEAE) BY PCR METHODS REMZİYE YILMAZ1, EVREN CABİ2* AND MUSA DOGAN3 1Middle East Technical University, Central Laboratory, Molecular Biology & Biotechnology R&D Center, 06530, Ankara, Turkey 2Namık Kemal University, Department of Biology, 59030 Tekirdağ, Turkey, 3Middle East Technical University, Department of Biological Sciences, 06530, Ankara-Turkey *Corresponding author’s e-mail: [email protected]; [email protected]; Ph: +90-282-2502670 Abstract RAPD-PCR (Random Amplified Polymorphic DNA Polymerase Chain Reaction) and Post PCR (Polymerase Chain Reaction) Melting Curve Analysis (MCA) have been used to investigate the pattern of genetic variation among some species in the genera Eremopyrum (Ledeb.) Jaub. & Spach and Agropyron Gaertner (Poaceae). Thirteen primers have been used in the study based on the RAPD-PCR and MCA analyses. Each species produced a distinct pattern of DNA fragments which have been used as a measure of the degree of relationship between species by means of using the RAPD-PCR results with three primers selected for identifying the genetic similarities. Polymorphic melting profiles have been obtained with Post PCR MCA method using three primers. Genetic similarities are calculated for all the species studied with RAPD-PCR and MCA methods, the dendrograms are obtained with the MVSP (Multi Variate Statistical Package) software using UPGMA (Unweighted Pair Group Method with Arithmetic Averages) and Jaccard’s Coefficient. Polymorphism between 18 populations of Eremopyrum and 6 Agropyron populations and within the species are determined by using RAPD-PCR and Post PCR melting curve analysis (MCA) respectively. -
Evolutionary Consequences of Dioecy in Angiosperms: the Effects of Breeding System on Speciation and Extinction Rates
EVOLUTIONARY CONSEQUENCES OF DIOECY IN ANGIOSPERMS: THE EFFECTS OF BREEDING SYSTEM ON SPECIATION AND EXTINCTION RATES by JANA C. HEILBUTH B.Sc, Simon Fraser University, 1996 A THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES (Department of Zoology) We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA July 2001 © Jana Heilbuth, 2001 Wednesday, April 25, 2001 UBC Special Collections - Thesis Authorisation Form Page: 1 In presenting this thesis in partial fulfilment of the requirements for an advanced degree at the University of British Columbia, I agree that the Library shall make it freely available for reference and study. I further agree that permission for extensive copying of this thesis for scholarly purposes may be granted by the head of my department or by his or her representatives. It is understood that copying or publication of this thesis for financial gain shall not be allowed without my written permission. The University of British Columbia Vancouver, Canada http://www.library.ubc.ca/spcoll/thesauth.html ABSTRACT Dioecy, the breeding system with male and female function on separate individuals, may affect the ability of a lineage to avoid extinction or speciate. Dioecy is a rare breeding system among the angiosperms (approximately 6% of all flowering plants) while hermaphroditism (having male and female function present within each flower) is predominant. Dioecious angiosperms may be rare because the transitions to dioecy have been recent or because dioecious angiosperms experience decreased diversification rates (speciation minus extinction) compared to plants with other breeding systems. -
JRG Consulting Wheat Barley Breeding Report Annexes for Public
Exploring Options for Producer Involvement in Wheat and Barley Variety Development Annexes Prepared for Wheat and Barley Variety Working Group Prepared by JRG Consulting Group a division of 1260977 Ontario Inc. Guelph, Ontario (519) 836-1860 November 2015 JRG Consulting Group Collaborating for Success in the Agri-Food Sector Exploring Options for Producer Involvement in Wheat and Barley Variety Development - Annexes November 2015 Table of Contents Annex Page A Wheat and Barley Variety Development in Western Canada Today 1 B Funding of Variety Development and Value Capture Today 16 C Constraints and Gaps in Wheat and Barley Variety Development 21 D Summary and Assessment of Producer Involvement Approaches 30 E Producer Involvement in Variety Development in Some Other Crops 34 F Producer Involvement in Variety Development with Royalties 41 G Variety Development in the United States 62 H Producer Involvement in Variety Development 86 I Potential Models for Producer Involvement in Variety Development 100 Prepared by JRG Consulting Group ii for Wheat and Barley Variety Working Group Exploring Options for Producer Involvement in Wheat and Barley Variety Development - Annexes November 2015 Annex A - Wheat and Barley Variety Development in Western Canada Today There are a number of institutions involved in wheat and barley variety development in western Canada. These range from public sector bodies such as Agriculture and Agri-Food Canada (AAFC), Alberta’s Field Crop Development Centre (FCDC), the Crop Development Centre (CDC) at the University of Saskatchewan (U of S), the National Research Council (NRC), the University of Alberta (U of M), University of Manitoba (U of M) and private sector bodies such as Bayer Crop Science, Canterra, and Syngenta. -
Importance of Crop Wild Relatives in Climate Resilience
Int.J.Curr.Microbiol.App.Sci (2020) 9(3): 2922-2932 International Journal of Current Microbiology and Applied Sciences ISSN: 2319-7706 Volume 9 Number 3 (2020) Journal homepage: http://www.ijcmas.com Review Article https://doi.org/10.20546/ijcmas.2020.903.336 Importance of Crop Wild Relatives in Climate Resilience B. Keerthiraj1*, Anju M. Job2, K. S. Shankarprasad3, G. S. Sathisha4, SadanandKumbar5 and C. M. Karthik6 1Department of Genetics and Plant Breeding, College of Agriculture, UAHS, Shivamogga-577204, India 2Department of Plant Breeding and Genetics, College of Horticulture, KAU, Thrissur-680656, India 3Department of Plantation Crops and Spices, College of Horticulture, UHS, Bagalkot-560065, India 4Department of Agronomy, College of Agriculture, UAHS, Shivamogga-577204, India 5Department of Vegetable science, OUAT, Odisha -751003, India 6Department of Agricultural Entomology, College of Agriculture, UAHS, Shivamogga-577204, India *Corresponding author ABSTRACT Inferable from the impressive populace of wild relatives and forebears, the hereditary base of harvests was peaceful wide before taming. Through the span of time, hereditarily uniform improved assortments supplanted the profoundly differing nearby cultivars and landraces. These high yielding K eyw or ds assortments have restricted inconstancy to battle the impact of biotic and abiotic stresses not at all like the Crop Wild Relative (CWR), which is an enormous store of agronomically critical Crop wild relatives. characteristics. The usage of qualities from wild hereditary assets (CWR) for harvest improvement is Wild genetic entrenched with essential models going back over a century. In this paper, the data on the resources. significance and use of wild qualities for expanding efficiency, biotic and abiotic stress opposition in Importance of wild major developed harvests is audited. -
Chloroplast Phylogenomic Analyses Resolve Multiple Origins of the Kengyilia Species Via Independent Polyploidization Events
Chloroplast phylogenomic analyses resolve multiple origins of the Kengyilia species via independent polyploidization events Shi-Yong Chen Triticeae Research Institute Hao Yan Triticeae Research Institute Li-Na Sha Triticeae Research Institute Ning Chen Triticeae Research Institute Yue Zhang Triticeae Research Institute Yi Wang Triticeae Research Institute Hou-Yang Kang Triticeae Research Institute Hai-Qin Zhang Triticeae Research Insitute Yong-Hong Zhou Triticeae Research Institute Xing Fan ( [email protected] ) Triticeae Research Institute Research article Keywords: Polyploid, Triticeae, multiple origins, maternal donor Posted Date: February 5th, 2020 DOI: https://doi.org/10.21203/rs.2.22669/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/15 Abstract Background Kengyilia is a group of allohexaploid species that arose from two hybridization events followed by genome doubling of three ancestral diploid species with different genomes St, Y and P in the wheat tribe. Estimating phylogenetic relationship in resolution of the maternal lineages has been dicult, owing to the extremely low rate of sequence divergence. Here, phylogenetic reconstructions based on the plastome sequences were used to explore the role of maternal progenitors in establishment of Kengyilia polyploid species. Results The plastome sequences of 11 Kengyilia species were analyzed together with 11 tetraploid species (PP, StP, and StY) and 33 diploid taxa representing 20 basic genomes in the Triticeae. Phylogenomic analysis and genetic divergence patterns suggested that (1) Kengyilia is closely related to Roegneria, Pseudoroegneria, Agropyron, Lophopyrum, Thinopyrum, and Dasypyrum; (2) both the StY genome Roegneria tetraploids and the PP genome Agropyron tetraploids severed as the maternal donor during the speciation of Kengyilia species; (3) the different Kengyilia species derived their StY genome from different Roegneria species. -
Toward a Taxonomic Definition of Perennial Wheat: a New Species ×Tritipyrum Aaseae Described
Genet Resour Crop Evol DOI 10.1007/s10722-016-0463-3 RESEARCH ARTICLE Toward a taxonomic definition of perennial wheat: a new species 3Tritipyrum aaseae described Colin Curwen-McAdams . Matthew Arterburn . Kevin Murphy . Xiwen Cai . Stephen S. Jones Received: 5 April 2016 / Accepted: 17 October 2016 Ó The Author(s) 2016. This article is published with open access at Springerlink.com Abstract Nearly a century has passed since the first convention based on the International Code for crosses were made between wheat (Triticum L.) and Nomenclature and describe one combination within perennial Triticeae relatives with the goal of develop- the new nothogenus 9Tritipyrum. The development of ing a perennial grain and forage crop. Numerous perennial grains has the potential to allow for new crosses of different species and genera have been agricultural systems that take advantage of the persis- attempted, and many have yielded fertile hybrids. tent nature of the crop. The taxonomic definition of Despite these successes, a definitive taxonomic treat- this new crop type will help focus research and ment of stable hybrids has never been established. breeding efforts as well as organize the literature and ‘‘Perennial wheat’’ is the term commonly used to refer facilitate collaboration. to these hybrids when the traits of interest are the perennial growth habit and grain yield, regardless of Keywords Intergeneric hybridization Á New parentage. In order to establish a consistent system in species Á Nomenclature Á Perennial wheat Á which researchers can effectively communicate and Taxonomy Á Triticum aestivum Á Thinopyrum collaborate, it is important to characterize unique ponticum Á 9Tritipyrum Á Wheatgrass combinations. -
What Is Bread Wheat
1 WHEAT Classification, Biodiversity and Issues for Conservation Ph.D. Studies: Paper compiled by Sharon Rempel, 1997. Contents: page Wheat Classification 02 Evolution 02 Place of Origin and Domestication 04 Morphology 05 Definitions of Biodiversity 10 How Biodiversity is measured and conserved 12 Molecular Genetics 13 Collections (gene banks) 22 Summary of the wheat genome mapping project 28 Work in Centers of Diversity on crop diversity 29 Impact of Modern Agriculture on wheat genetic diversity 32 Major Issues for the future conservation and utilization of wheat genetic diversity 37 2 Wheat Classification, Evolution, Place of origin and Domestication and Morphology Classification: There are one quarter of a million species of higher plants; 3000 domesticated; 150 extensively. Ninety-eight percent of the food on earth is derived from these 150 plants. Wheat is the staple food for thirty five percent of the world and is grown on 240 million hectares annually. (Knott 1987). Wheat is a member of the Grass family Gramineae (Poaceae) and the tribe Triticeae (= Hordeae) (Briggle and Reitz 1963) in which the one to several flowered spikelets are sessile and alternate on opposite sides of the rachis forming a true spike. Wheats (Triticum) and ryes (Secale) together with Aegilops, Agropyron, Eremopyron and Haynalidia form the subtribe Triticinae (Simmonds 1976). Linnaeus in 1753 first classified wheat. In 1918 Sakamura reported the chromosome number sets (genomes) for each commonly recognized type; this was a turning point in Triticum classification for it separated wheat into three groups. Diploids had 14 chromosomes (n=7), tetraploids had 28 (n=14) and the hexaploids had 42 (n=21). -
Crop Wild Relatives in Durum Wheat Breeding: Drift Or Thrift?
Received: 1 April 2020 Accepted: 18 May 2020 DOI: 10.1002/csc2.20223 Crop Science SPECIAL ISSUE ARTICLE Adapting Agriculture to Climate Change: A Walk on the Wild Side Crop wild relatives in durum wheat breeding: Drift or thrift? Noureddine El Haddad1 Hafssa Kabbaj1,2 Meryem Zaïm1,2 Khaoula El Hassouni3 Amadou Tidiane Sall1,4 Mounira Azouz5 Rodomiro Ortiz6 Michael Baum1 Ahmed Amri1 Fernanda Gamba7 Filippo Maria Bassi1 1 International Center for the Agricultural Research in the Dry Areas (ICARDA), Abstract Rabat 1000, Morocco Crop wild relatives (CWRs) are an important source of genetic diversity for crop 2 Lab. of Microbiology and Molecular improvement. The aim of this study was to assess the usefulness of deploying Biology, Faculty of Sciences, Univ. Mohammed V, Rabat 10000, Morocco CWRs in durum wheat [Triticum turgidum L. subsp. durum (Desf.) van Slageren] 3 State Plant Breeding Inst., Univ. of breeding. A set of 60 accessions was selected to include cultivars from nine coun- Hohenheim, Stuttgart, Germany tries, top lines obtained via elite-by-elite crossing, and CWR-derived lines. These 4 Inst. Sénégalais de Recherches Agricoles accessions were screened for resistance against four major fungal diseases to (ISRA), Saint-Louis 46024, Senegal reveal that CWR-derived lines are a good source of resistance against Septo- 5 Inst. National de la Recherche Agronomique d’Algérie (INRAA), Alger ria leaf blotch (Zymoseptoria tritici), while they were highly susceptible to tan 16200, Algeria spot (Pyrenophora tritici-repentis). Drought tolerance was assessed at eight envi- 6 Sveriges lantbruksuniversitet (SLU), ronments with contrasting nitrogen levels and tillage practices to reveal a clear Inst. -
Historical Review and Prospect of Taxonomy of Tribe Triticeae Dumortier (Poaceae)
Breeding Science 59: 513–518 (2009) Review Historical review and prospect of taxonomy of tribe Triticeae Dumortier (Poaceae) Chi Yen* and Jun Liang Yang Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, Sichuan, The People’s Republic of China The tribe Triticeae is a taxon in the Poaceae that includes several important cereal crops and forage grasses. All its species, including those that are not used for cereals or forage, are potential sources of genes for crop and forage improvement so they all have high economic value. Taxonomic treatments, including those of the Triticeae, are the basis for identification. They are often designed to reflect phylogenetic relationships and provide a guide for germplasm utilization. Traditional taxonomic treatments of the Triticeae were based on comparative morphology and geography. Morphological characters are phenotypes of an organism, resulting from interactions between or among dominant genes and environmental factors. Morphology cannot reflect recessive inheritance. Similar environmental conditions may result in morphological convergence in distantly related taxa and different environmental conditions in morphological divergence of closely related taxa. Con- sequently, traditional morphological taxonomy may result in misclassification. Cytogenetic and/or molecular genomic analysis may reveal such mistakes. On the basis of recent genomic investigations of the Triticeae, we have recognized 30 genera in this tribe. The taxonomic changes and genomic constitution of these genera are presented in this paper. Key Words: Triticeae, genera, genomic constitution, phylogenetic relationships. Introduction Linnaeus (1753) later named them Aegilops ovata and Ae. triuncialis, respectively. These names are, however, al- The tribe Triticeae is a taxon in the Poaceae that includes ways attributed to Linnaeus because, ever since acceptance several important cereal crops and forage grasses. -
Ardabil-Tabriz, Iran, by the Members of Kyoto University Scientific Expedition to the Karakorani and Hindukush in 1955 (Sakamoto and Muramatsu, 1965)
INTERGENERIC HYBRIDISATION BETWEEN EREMOPYRUM ORIENTALE AND HENRARDIA PERSICA, AN EXAMPLE OF POLYPLOID SPECIES FORMATION* SADAO SAKAMOTO National Institute of Genetics, Misima, Japan Received5.iv.71 1. INTRODUCTION THE tribe Triticeae, Gramineae, includes about 14 genera. Among them Henrardia C. E. Hubbard represents a very small genus which contains two annual species, Hn. persica (Boiss.) C. E. Hubbard and Hn. pubescens (Bertol.) C. E. Hubbard (Hubbard, 1946). The chromosome numbers of both have been reported as 2n =14,for the former by Sakamoto and Muramatsu (1965) and for the latter by Bowden (1966). The two representatives have quite a characteristic morphology, different, according to Bor (1960), from other genera of the tribe by the following characters: spikelets 1-2-flowered, awnless, sunk into a jointed fragile spike-axis and closely appressed to it; florets enclosed in collateral glumes; lemmas thin, membranous, 3-5-nerved. Both species are distributed in Turkey (Anatolia) and from there have dispersed eastwards through Armenia and Transcaucasia to Russian Central Asia and southwards to Iraq, Iran, Afghanistan and Baluchistan (Hubbard, bc. cit.). In an attempt to clarify the genetic relationships between this odd looking genus and other genera of the tribe, Hn. persica was crossed as either female or male parent with Aegilops bicornis Jaub. et Spach, Ae. caudata L., Ae. cylindrica Host, Ae. ovata L., Ae. sharonensis Eig, Ae. squarrosa L., Ae umbellulata Zhuk., Agropron tsukushiense (Honda) Ohwi, Ereinopyrum bonaepartis (Spreng.) Nevski, Er. orientate (L.) Jaub. et Spach, Heteranthelium pi1ferum (Banks et Sol.) Hochst, Taeniatherum asperum (Simonkai) Nevski and Triticum boeoticum Boiss. From these crosses intergeneric hybrids were obtained so far only in crosses of Henrardia persica with Eremopyrum orientate.