TRP Channels of Intracellular Membranes
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A Computational Model of Large Conductance Voltage and Calcium
Journal of Computational Neuroscience (2019) 46:233–256 https://doi.org/10.1007/s10827-019-00713-9 A computational model of large conductance voltage and calcium activated potassium channels: implications for calcium dynamics and electrophysiology in detrusor smooth muscle cells Suranjana Gupta1 · Rohit Manchanda1 Received: 11 September 2018 / Revised: 14 February 2019 / Accepted: 19 February 2019 / Published online: 25 April 2019 © Springer Science+Business Media, LLC, part of Springer Nature 2019 Abstract The large conductance voltage and calcium activated potassium (BK) channels play a crucial role in regulating the excitability of detrusor smooth muscle, which lines the wall of the urinary bladder. These channels have been widely characterized in terms of their molecular structure, pharmacology and electrophysiology. They control the repolarising and hyperpolarising phases of the action potential, thereby regulating the firing frequency and contraction profiles of the smooth muscle. Several groups have reported varied profiles of BK currents and I-V curves under similar experimental conditions. However, no single computational model has been able to reconcile these apparent discrepancies. In view of the channels’ physiological importance, it is imperative to understand their mechanistic underpinnings so that a realistic model can be created. This paper presents a computational model of the BK channel, based on the Hodgkin-Huxley formalism, constructed by utilising three activation processes — membrane potential, calcium inflow from voltage-gated calcium channels on the membrane and calcium released from the ryanodine receptors present on the sarcoplasmic reticulum. In our model, we attribute the discrepant profiles to the underlying cytosolic calcium received by the channel during its activation. The model enables us to make heuristic predictions regarding the nature of the sub-membrane calcium dynamics underlying the BK channel’s activation. -
Entropy-Based Regulation of Cluster Ion Channel Density
www.nature.com/scientificreports OPEN Molecular and cellular correlates in Kv channel clustering: entropy‑based regulation of cluster ion channel density Limor Lewin1, Esraa Nsasra1, Ella Golbary1, Uzi Hadad2, Irit Orr1 & Ofer Yifrach1* Scafold protein-mediated ion channel clustering at unique membrane sites is important for electrical signaling. Yet, the mechanism(s) by which scafold protein-ion channel interactions lead to channel clustering or how cluster ion channel density is regulated is mostly not known. The voltage‑activated potassium channel (Kv) represents an excellent model to address these questions as the mechanism underlying its interaction with the post-synaptic density 95 (PSD-95) scafold protein is known to be controlled by the length of the extended ‘ball and chain’ sequence comprising the C-terminal channel region. Here, using sub-difraction high-resolution imaging microscopy, we show that Kv channel ‘chain’ length regulates Kv channel density with a ‘bell’-shaped dependence, refecting a balance between thermodynamic considerations controlling ‘chain’ recruitment by PSD-95 and steric hindrance due to the spatial proximity of multiple channel molecules. Our results thus reveal an entropy‑based mode of channel cluster density regulation that mirrors the entropy‑based regulation of the Kv channel-PSD-95 interaction. The implications of these fndings for electrical signaling are discussed. Action potential generation, propagation and the evoked synaptic potential all rely on precisely timed events associated with activation and inactivation gating transitions of voltage-dependent Na + and K + channels, clus- tered in multiple copies at unique membrane sites, such as the initial segment of an axon, nodes of Ranvier, pre-synaptic terminals or at the post-synaptic density (PSD)1–3. -
Transient Receptor Potential (TRP) Channels in Haematological Malignancies: an Update
biomolecules Review Transient Receptor Potential (TRP) Channels in Haematological Malignancies: An Update Federica Maggi 1,2 , Maria Beatrice Morelli 2 , Massimo Nabissi 2 , Oliviero Marinelli 2 , Laura Zeppa 2, Cristina Aguzzi 2, Giorgio Santoni 2 and Consuelo Amantini 3,* 1 Department of Molecular Medicine, Sapienza University, 00185 Rome, Italy; [email protected] 2 Immunopathology Laboratory, School of Pharmacy, University of Camerino, 62032 Camerino, Italy; [email protected] (M.B.M.); [email protected] (M.N.); [email protected] (O.M.); [email protected] (L.Z.); [email protected] (C.A.); [email protected] (G.S.) 3 Immunopathology Laboratory, School of Biosciences and Veterinary Medicine, University of Camerino, 62032 Camerino, Italy * Correspondence: [email protected]; Tel.: +30-0737403312 Abstract: Transient receptor potential (TRP) channels are improving their importance in differ- ent cancers, becoming suitable as promising candidates for precision medicine. Their important contribution in calcium trafficking inside and outside cells is coming to light from many papers published so far. Encouraging results on the correlation between TRP and overall survival (OS) and progression-free survival (PFS) in cancer patients are available, and there are as many promising data from in vitro studies. For what concerns haematological malignancy, the role of TRPs is still not elucidated, and data regarding TRP channel expression have demonstrated great variability throughout blood cancer so far. Thus, the aim of this review is to highlight the most recent findings Citation: Maggi, F.; Morelli, M.B.; on TRP channels in leukaemia and lymphoma, demonstrating their important contribution in the Nabissi, M.; Marinelli, O.; Zeppa, L.; perspective of personalised therapies. -
Snapshot: Mammalian TRP Channels David E
SnapShot: Mammalian TRP Channels David E. Clapham HHMI, Children’s Hospital, Department of Neurobiology, Harvard Medical School, Boston, MA 02115, USA TRP Activators Inhibitors Putative Interacting Proteins Proposed Functions Activation potentiated by PLC pathways Gd, La TRPC4, TRPC5, calmodulin, TRPC3, Homodimer is a purported stretch-sensitive ion channel; form C1 TRPP1, IP3Rs, caveolin-1, PMCA heteromeric ion channels with TRPC4 or TRPC5 in neurons -/- Pheromone receptor mechanism? Calmodulin, IP3R3, Enkurin, TRPC6 TRPC2 mice respond abnormally to urine-based olfactory C2 cues; pheromone sensing 2+ Diacylglycerol, [Ca ]I, activation potentiated BTP2, flufenamate, Gd, La TRPC1, calmodulin, PLCβ, PLCγ, IP3R, Potential role in vasoregulation and airway regulation C3 by PLC pathways RyR, SERCA, caveolin-1, αSNAP, NCX1 La (100 µM), calmidazolium, activation [Ca2+] , 2-APB, niflumic acid, TRPC1, TRPC5, calmodulin, PLCβ, TRPC4-/- mice have abnormalities in endothelial-based vessel C4 i potentiated by PLC pathways DIDS, La (mM) NHERF1, IP3R permeability La (100 µM), activation potentiated by PLC 2-APB, flufenamate, La (mM) TRPC1, TRPC4, calmodulin, PLCβ, No phenotype yet reported in TRPC5-/- mice; potentially C5 pathways, nitric oxide NHERF1/2, ZO-1, IP3R regulates growth cones and neurite extension 2+ Diacylglycerol, [Ca ]I, 20-HETE, activation 2-APB, amiloride, Cd, La, Gd Calmodulin, TRPC3, TRPC7, FKBP12 Missense mutation in human focal segmental glomerulo- C6 potentiated by PLC pathways sclerosis (FSGS); abnormal vasoregulation in TRPC6-/- -
Modeling of Voltage-Gated Ion Channels
Modeling of voltage-gated ion channels Modeling of voltage-gated ion channels Pär Bjelkmar c Pär Bjelkmar, Stockholm 2011, pages 1-65 Cover picture: Produced by Pär Bjelkmar and Jyrki Hokkanen at CSC - IT Center for Science, Finland. Cover of PLoS Computational Biology February 2009 issue. ISBN 978-91-7447-336-0 Printed in Sweden by US-AB, Stockholm 2011 Distributor: Department of Biochemistry and Biophysics, Stockholm University Abstract The recent determination of several crystal structures of voltage-gated ion channels has catalyzed computational efforts of studying these re- markable molecular machines that are able to conduct ions across bi- ological membranes at extremely high rates without compromising the ion selectivity. Starting from the open crystal structures, we have studied the gating mechanism of these channels by molecular modeling techniques. Firstly, by applying a membrane potential, initial stages of the closing of the channel were captured, manifested in a secondary-structure change in the voltage-sensor. In a follow-up study, we found that the energetic cost of translocating this 310-helix was significantly lower than in the origi- nal conformation. Thirdly, collaborators of ours identified new molecular constraints for different states along the gating pathway. We used those to build new protein models that were evaluated by simulations. All these results point to a gating mechanism where the S4 helix undergoes a secondary structure transformation during gating. These simulations also provide information about how the protein in- teracts with the surrounding membrane. In particular, we found that lipid molecules close to the protein diffuse together with it, forming a large dynamic lipid-protein cluster. -
Stem Cells and Ion Channels
Stem Cells International Stem Cells and Ion Channels Guest Editors: Stefan Liebau, Alexander Kleger, Michael Levin, and Shan Ping Yu Stem Cells and Ion Channels Stem Cells International Stem Cells and Ion Channels Guest Editors: Stefan Liebau, Alexander Kleger, Michael Levin, and Shan Ping Yu Copyright © 2013 Hindawi Publishing Corporation. All rights reserved. This is a special issue published in “Stem Cells International.” All articles are open access articles distributed under the Creative Com- mons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Editorial Board Nadire N. Ali, UK Joseph Itskovitz-Eldor, Israel Pranela Rameshwar, USA Anthony Atala, USA Pavla Jendelova, Czech Republic Hannele T. Ruohola-Baker, USA Nissim Benvenisty, Israel Arne Jensen, Germany D. S. Sakaguchi, USA Kenneth Boheler, USA Sue Kimber, UK Paul R. Sanberg, USA Dominique Bonnet, UK Mark D. Kirk, USA Paul T. Sharpe, UK B. Bunnell, USA Gary E. Lyons, USA Ashok Shetty, USA Kevin D. Bunting, USA Athanasios Mantalaris, UK Igor Slukvin, USA Richard K. Burt, USA Pilar Martin-Duque, Spain Ann Steele, USA Gerald A. Colvin, USA EvaMezey,USA Alexander Storch, Germany Stephen Dalton, USA Karim Nayernia, UK Marc Turner, UK Leonard M. Eisenberg, USA K. Sue O’Shea, USA Su-Chun Zhang, USA Marina Emborg, USA J. Parent, USA Weian Zhao, USA Josef Fulka, Czech Republic Bruno Peault, USA Joel C. Glover, Norway Stefan Przyborski, UK Contents Stem Cells and Ion Channels, Stefan Liebau, -
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STRUCTURAL AND FUNCTIONAL STUDIES OF TRPML1 AND TRPP2 Nicole Marie Benvin Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Graduate School of Arts and Sciences COLUMBIA UNIVERSITY 2017 © 2017 Nicole Marie Benvin All Rights Reserved ABSTRACT Structural and Functional Studies of TRPML1 and TRPP2 Nicole Marie Benvin In recent years, the determination of several high-resolution structures of transient receptor potential (TRP) channels has led to significant progress within this field. The primary focus of this dissertation is to elucidate the structural characterization of TRPML1 and TRPP2. Mutations in TRPML1 cause mucolipidosis type IV (MLIV), a rare neurodegenerative lysosomal storage disorder. We determined the first high-resolution crystal structures of the human TRPML1 I-II linker domain using X-ray crystallography at pH 4.5, pH 6.0, and pH 7.5. These structures revealed a tetramer with a highly electronegative central pore which plays a role in the dual Ca2+/pH regulation of TRPML1. Notably, these physiologically relevant structures of the I-II linker domain harbor three MLIV-causing mutations. Our findings suggest that these pathogenic mutations destabilize not only the tetrameric structure of the I-II linker, but also the overall architecture of full-length TRPML1. In addition, TRPML1 proteins containing MLIV- causing mutations mislocalized in the cell when imaged by confocal fluorescence microscopy. Mutations in TRPP2 cause autosomal dominant polycystic kidney disease (ADPKD). Since novel technological advances in single-particle cryo-electron microscopy have now enabled the determination of high-resolution membrane protein structures, we set out to solve the structure of TRPP2 using this technique. -
TRPM7 Facilitates Cholinergic Vesicle Fusion with the Plasma Membrane
TRPM7 facilitates cholinergic vesicle fusion with the plasma membrane Sebastian Brauchi*, Grigory Krapivinsky, Luba Krapivinsky, and David E. Clapham† Department of Cardiology, Howard Hughes Medical Institute, Children’s Hospital Boston, and Department of Neurobiology, Harvard Medical School, Enders Building 1309, 320 Longwood Avenue, Boston, MA 02115 Contributed by David E. Clapham, January 29, 2008 (sent for review December 3, 2007) TRPM7, of the transient receptor potential (TRP) family, is both an the inclusion of a zinc-finger domain (13). This kinase phos- ion channel and a kinase. Previously, we showed that TRPM7 is phorylates TRPM7 (14) and other substrates [e.g., annexin 1 (15) located in the membranes of acetylcholine (ACh)-secreting synaptic and myosin heavy chain (16)], but its physiological role is not vesicles of sympathetic neurons, forms a molecular complex with known. The pore of TRPM7 was proposed to be a major entry proteins of the vesicular fusion machinery, and is critical for mechanism for Mg2ϩ ions and, in this role, critical for cell stimulated neurotransmitter release. Here, we targeted pHluorin survival (17). TRPM7 is localized in the membrane of sympa- to small synaptic-like vesicles (SSLV) in PC12 cells and demonstrate thetic neuronal acetylcholine (ACh)-secreting synaptic vesicles that it can serve as a single-vesicle plasma membrane fusion as part of a molecular complex of synaptic vesicle-specific reporter. In PC12 cells, as in sympathetic neurons, TRPM7 is located proteins and its permeability is critical -
The Role of TRP Proteins in Mast Cells
View metadata, citation and similar papers at core.ac.uk brought to you by CORE REVIEW ARTICLE published: 12 Juneprovided 2012 by Frontiers - Publisher Connector doi: 10.3389/fimmu.2012.00150 The role ofTRP proteins in mast cells Marc Freichel*, Julia Almering and VolodymyrTsvilovskyy Pharmakologisches Institut, Universität Heidelberg, Heidelberg, Germany Edited by: Transient receptor potential (TRP) proteins form cation channels that are regulated through Ulrich Blank, Université Paris-Diderot strikingly diverse mechanisms including multiple cell surface receptors, changes in tem- Paris 7, France 2+ 2+ perature, in pH and osmolarity, in cytosolic free Ca concentration ([Ca ]i), and by Reviewed by: Marc Benhamou, Institut National de phosphoinositides which makes them polymodal sensors for fine tuning of many cellu- la Santé et de la Recherche Médicale, lar and systemic processes in the body. The 28 TRP proteins identified in mammals are France classified into six subfamilies: TRPC, TRPV, TRPM, TRPA, TRPML, and TRPP.When acti- Pierre Launay, Institut National de la vated, they contribute to cell depolarization and Ca2+ entry. In mast cells, the increase of Santé et de la Recherche Médicale, 2+ 2+ France [Ca ]i is fundamental for their biological activity, and several entry pathways for Ca and 2+ 2+ *Correspondence: other cations were described including Ca release activated Ca (CRAC) channels. Like 2+ Marc Freichel, Pharmakologisches in other non-excitable cells, TRP channels could directly contribute to Ca influx via the Institut, Universität Heidelberg, Im plasma membrane as constituents of Ca2+ conducting channel complexes or indirectly by Neuenheimer Feld 366, 69120 shifting the membrane potential and regulation of the driving force for Ca2+ entry through Heidelberg, Germany. -
Supplementary Table 2
Supplementary Table 2. Differentially Expressed Genes following Sham treatment relative to Untreated Controls Fold Change Accession Name Symbol 3 h 12 h NM_013121 CD28 antigen Cd28 12.82 BG665360 FMS-like tyrosine kinase 1 Flt1 9.63 NM_012701 Adrenergic receptor, beta 1 Adrb1 8.24 0.46 U20796 Nuclear receptor subfamily 1, group D, member 2 Nr1d2 7.22 NM_017116 Calpain 2 Capn2 6.41 BE097282 Guanine nucleotide binding protein, alpha 12 Gna12 6.21 NM_053328 Basic helix-loop-helix domain containing, class B2 Bhlhb2 5.79 NM_053831 Guanylate cyclase 2f Gucy2f 5.71 AW251703 Tumor necrosis factor receptor superfamily, member 12a Tnfrsf12a 5.57 NM_021691 Twist homolog 2 (Drosophila) Twist2 5.42 NM_133550 Fc receptor, IgE, low affinity II, alpha polypeptide Fcer2a 4.93 NM_031120 Signal sequence receptor, gamma Ssr3 4.84 NM_053544 Secreted frizzled-related protein 4 Sfrp4 4.73 NM_053910 Pleckstrin homology, Sec7 and coiled/coil domains 1 Pscd1 4.69 BE113233 Suppressor of cytokine signaling 2 Socs2 4.68 NM_053949 Potassium voltage-gated channel, subfamily H (eag- Kcnh2 4.60 related), member 2 NM_017305 Glutamate cysteine ligase, modifier subunit Gclm 4.59 NM_017309 Protein phospatase 3, regulatory subunit B, alpha Ppp3r1 4.54 isoform,type 1 NM_012765 5-hydroxytryptamine (serotonin) receptor 2C Htr2c 4.46 NM_017218 V-erb-b2 erythroblastic leukemia viral oncogene homolog Erbb3 4.42 3 (avian) AW918369 Zinc finger protein 191 Zfp191 4.38 NM_031034 Guanine nucleotide binding protein, alpha 12 Gna12 4.38 NM_017020 Interleukin 6 receptor Il6r 4.37 AJ002942 -
The TRPM7 Ion Channel Functions in Cholinergic Synaptic Vesicles and Affects Transmitter Release
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Neuron 52, 485–496, November 9, 2006 ª2006 Elsevier Inc. DOI 10.1016/j.neuron.2006.09.033 The TRPM7 Ion Channel Functions in Cholinergic Synaptic Vesicles and Affects Transmitter Release Grigory Krapivinsky,1 Sumiko Mochida,3 (TRPML channels) are presumed intracellular vesicular Luba Krapivinsky,1 Susan M. Cibulsky,1 channels (Di Palma et al., 2002; LaPlante et al., 2002), and David E. Clapham1,2,* but their function in vesicles is not well understood. 1 Howard Hughes Medical Institute Neurotransmitter vesicles release their cargoes by Cardiology fusion with the plasma membrane followed by diffusion Children’s Hospital Boston of their contents into the intercellular space. The fusion 1309 Enders Building process itself is not completely understood, but involves 320 Longwood Avenue a complex of proteins with specialized functions that al- 2 Department of Neurobiology low them to achieve close approximation of the vesicle Harvard Medical School to the plasma membrane and sense changes in [Ca2+] Boston, Massachusetts 02115 that trigger rapid fusion (Sudhof, 2004). Although neuro- 3 Department of Physiology transmitter release requires ion channels, ion channels Tokyo Medical University are best known for their function as the plasma mem- Tokyo 160-8402 brane mediators of the timing and entry of Ca2+ into Japan the cell, which in turn triggers vesicle fusion. Functional ion channels have been recorded in preparations of syn- aptic vesicles (Yakir and Rahamimoff, 1995; Kelly and Summary Woodbury, 1996), and a few well-established plasma membrane channels have been proposed to localize to A longstanding hypothesis is that ion channels are vesicles and regulate their ionic equilibrium (Ehrenstein present in the membranes of synaptic vesicles and et al., 1991; Grahammer et al., 2001), but their molecular might affect neurotransmitter release. -
Study of Selectivity and Permeation in Voltage-Gated Ion Channels
Study of Selectivity and Permeation in Voltage-Gated Ion Channels By Janhavi Giri, Ph.D. Visiting Research Faculty Division of Molecular Biophysics and Physiology Rush University Medical Center Chicago, IL, USA Email: [email protected] i TABLE OF CONTENTS Page TABLE OF CONTENTS ..................................................................................................... i LIST OF TABLES ............................................................................................................. iii LIST OF FIGURES ........................................................................................................... iv SUMMARY ............................................................................................................... xvi CHAPTER 1. INTRODUCTION ....................................................................................... 1 1.1. Background ................................................................................................... 1 1.2. Overview .................................................................................................... 10 CHAPTER 2. SELF-ORGANIZED MODELS OF SELECTIVITY IN CALCIUM CHANNELS ........................................................................................... 13 2.1. Introduction ................................................................................................ 13 2.2. Methods ...................................................................................................... 19 2.2.1. Model of Channel and Electrolyte ........................................................19