Synthesis of New Linear Polymers Containing Thiocarbonyl Groups: Polyaddition of Dicarbothioic Acid to Diolefins
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8.6 Acidity of Alcohols and Thiols 355
08_BRCLoudon_pgs5-1.qxd 12/8/08 11:05 AM Page 355 8.6 ACIDITY OF ALCOHOLS AND THIOLS 355 ural barrier to the passage of ions. However, the hydrocarbon surface of nonactin allows it to enter readily into, and pass through, membranes. Because nonactin binds and thus transports ions, the ion balance crucial to proper cell function is upset, and the cell dies. Ion Channels Ion channels, or “ion gates,” provide passageways for ions into and out of cells. (Recall that ions are not soluble in membrane phospholipids.) The flow of ions is essen- tial for the transmission of nerve impulses and for other biological processes. A typical chan- nel is a large protein molecule imbedded in a cell membrane. Through various mechanisms, ion channels can be opened or closed to regulate the concentration of ions in the interior of the cell. Ions do not diffuse passively through an open channel; rather, an open channel contains regions that bind a specific ion. Such an ion is bound specifically within the channel at one side of the membrane and is somehow expelled from the channel on the other side. Remark- ably, the structures of the ion-binding regions of these channels have much in common with the structures of ionophores such as nonactin. The first X-ray crystal structure of a potassium- ion channel was determined in 1998 by a team of scientists at Rockefeller University led by Prof. Roderick MacKinnon (b. 1956), who shared the 2003 Nobel Prize in Chemistry for this work. The interior of the channel contains binding sites for two potassium ions; these sites are oxygen-rich, much like the interior of nonactin. -
Nomenclature of Carboxylic Acids • Select the Longest Carbon Chain Containing the Carboxyl Group
Chapter 5 Carboxylic Acids and Esters Carboxylic Acids • Carboxylic acids are weak organic acids which Chapter 5 contain the carboxyl group (RCO2H): Carboxylic Acids and Esters O C O H O RCOOH RCO2H Chapter Objectives: O condensed ways of • Learn to recognize the carboxylic acid, ester, and related functional groups. RCOH writing the carboxyl • Learn the IUPAC system for naming carboxylic acids and esters. group a carboxylic acid C H • Learn the important physical properties of the carboxylic acids and esters. • Learn the major chemical reaction of carboxylic acids and esters, and learn how to O predict the products of ester synthesis and hydrolysis reactions. the carboxyl group • Learn some of the important properties of condensation polymers, especially the polyesters. Mr. Kevin A. Boudreaux • The tart flavor of sour-tasting foods is often caused Angelo State University CHEM 2353 Fundamentals of Organic Chemistry by the presence of carboxylic acids. Organic and Biochemistry for Today (Seager & Slabaugh) www.angelo.edu/faculty/kboudrea 2 Nomenclature of Carboxylic Acids • Select the longest carbon chain containing the carboxyl group. The -e ending of the parent alkane name is replaced by the suffix -oic acid. • The carboxyl carbon is always numbered “1” but the number is not included in the name. • Name the substituents attached to the chain in the Nomenclature of usual way. • Aromatic carboxylic acids (i.e., with a CO2H Carboxylic Acids directly connected to a benzene ring) are named after the parent compound, benzoic acid. O C OH 3 -
THIOL OXIDATION a Slippery Slope the Oxidation of Thiols — Molecules RSH Oxidation May Proceed Too Predominates
RESEARCH HIGHLIGHTS Nature Reviews Chemistry | Published online 25 Jan 2017; doi:10.1038/s41570-016-0013 THIOL OXIDATION A slippery slope The oxidation of thiols — molecules RSH oxidation may proceed too predominates. Here, the maximum of the form RSH — can afford quickly for intermediates like RSOH rate constants indicate the order − − − These are many products. From least to most to be spotted and may also afford of reactivity: RSO > RS >> RSO2 . common oxidized, these include disulfides intractable mixtures. Addressing When the reactions are carried out (RSSR), as well as sulfenic (RSOH), the first problem, Chauvin and Pratt in methanol-d , the obtained kinetic reactions, 1 sulfinic (RSO2H) and sulfonic slowed the reactions down by using isotope effect values (kH/kD) are all but have (RSO3H) acids. Such chemistry “very sterically bulky thiols, whose in the range 1.1–1.2, indicating that historically is pervasive in nature, in which corresponding sulfenic acids were no acidic proton is transferred in the been very disulfide bonds between cysteine known to be isolable but were yet rate-determining step. Rather, the residues stabilize protein structures, to be thoroughly explored in terms oxidations involve a specific base- difficult to and where thiols and thiolates often of reactivity”. The second problem catalysed mechanism wherein an study undergo oxidation by H2O2 or O2 in was tackled by modifying the model acid–base equilibrium precedes the order to protect important biological system, 9-mercaptotriptycene, by rate-determining nucleophilic attack − − − structures from damage. Among including a fluorine substituent to of RS , RSO or RSO2 on H2O2. the oxidation products, sulfenic serve as a spectroscopic handle. -
Optimisation Du Métabolisme Énergétique Du Soufre Chez La Bactérie Hyperthermophile Aquifex Aeolicus
Aix-Marseille Université Ecole Doctorale des Sciences de la Vie et de la Santé Thèse de Doctorat d’Université Mention Microbiologie Clément AUSSIGNARGUES Optimisation du métabolisme énergétique du soufre chez la bactérie hyperthermophile Aquifex aeolicus Soutenue le 17 Décembre 2012 devant le jury: Pr. Frédéric BARRAS Dr. Laurent COURNAC Dr. Bruno FRANZETTI Dr. Marie-Thérèse GIUDICI-ORTICONI Dr. Anne GODFROY Dr. Marianne ILBERT Laboratoire de Bioénergétique et Ingénierie des Protéines Centre National de la Recherche Scientifique Aix-Marseille Université Ecole Doctorale des Sciences de la Vie et de la Santé Thèse de Doctorat d’Université Mention Microbiologie Clément AUSSIGNARGUES Optimisation du métabolisme énergétique du soufre chez la bactérie hyperthermophile Aquifex aeolicus Soutenue le 17 Décembre 2012 devant le jury: Pr. Frédéric BARRAS Dr. Laurent COURNAC Dr. Bruno FRANZETTI Dr. Marie-Thérèse GIUDICI-ORTICONI Dr. Anne GODFROY Dr. Marianne ILBERT Laboratoire de Bioénergétique et Ingénierie des Protéines Centre National de la Recherche Scientifique Sommaire Sommaire Introduction 2 Chapitre I- Métabolismes énergétiques du soufre 4 I) Le soufre, un élément essentiel aux multiples facettes 6 II) Le soufre utilisé comme composé énergétique 9 A) Oxydation des composés du soufre 10 1. Oxydation du sulfure d’hydrogène H2S 10 a) La Sulfure Quinone Oxydoréductase (SQR) 10 b) La flavocytochrome c sulfure déshydrogénase (FCSD) 13 2- 2. Oxydation du thiosulfate (S2O3 ) 14 a) Thiosulfate : accepteur oxydoréductase (TAOR) 14 b) Le système Sox 16 2- 3. Oxydation du sulfite (SO3 ) 20 a) Sulfite : accepteur oxydoréductase (SAOR) 21 b) Voie de l’APS 23 4. Oxydation du soufre stocké dans les globules 26 B) La réduction du soufre : soufre/polysulfure réductase 29 C) Un cas particulier : la dismutation du soufre (SOR) 33 1. -
Thiolated Polymers: Stability of Thiol Moieties Under Different Storage Conditions
Scientia Pharmaceutica (Sci. Pharm.) 70, 331-339 (2002) 0 Osterreichische Apotheker-Verlagsgesellschaftm.b.H., Wien, Printed in Austria Thiolated polymers: Stability of thiol moieties under different storage conditions A. ~ernko~-schnijrchi*,M.D. ~ornof'*,C.E. ~ast'and N. ~angoth' 'institute of Pharmaceutical Technology and Biopharmaceutics, Center of Pharmacy, University of Vienna, Althanstr. 14, 1090 Vienna, Austria 2~romaPharma GmbH, lndustriezeile 6, 2100 Leobendorf, Austria Abstract: The purpose of this study was to evaluate the stability of thiolated polymers - so-called thiomers. A polycarbophil-cysteine conjugate and a chitosan-thioglycolic acid conjugate were chosen as representative anionic and cationic thiomer. The thiol group bearing compounds L-cysteine and thioglycolic acid were introduced to polycarbophil and chitosan, respectively with a coupling reaction mediated by a carbodiimide. The resulting thiolated polymers were freeze-dried and the amount of thiol groups on the thiomer was determined spectrophotometrically. Each kind of polymer was directly used or compressed into 1 mg matrix-tablets. Polymers were stored for a period of six months at four different storage conditions, namely at -20°C (56% relative humidity; RH), 4°C (53% RH), at 20°C (70% RH), and at 22°C (25% RH). Samples were taken after 6 months to determine the formation of disulfide bonds and the remaining thiol groups on the polymer. When the polycarbophil-cysteine and chitosan-thioglycolic acid conjugate were stored as powder a decrease of free thiol groups was observed only after storage at 20°C and 70% RH. Both polymers were found to be stable under all storage conditions when compressed into matrix tablets. -
In This Handout, All of Our Functional Groups Are Presented As Condensed Line Formulas, 2D and 3D Formulas and with Nomenclature Prefixes and Suffixes (If Present)
In this handout, all of our functional groups are presented as condensed line formulas, 2D and 3D formulas and with nomenclature prefixes and suffixes (if present). Organic names are built on a foundation of alkanes, alkenes and alkynes. Those examples are presented first and you need to know those rules. The strategies can be found in Chapter 4 of our textbook (alkanes: pages 93-98, cycloalkanes 102-104, alkenes: pages 104-110, alkynes: pages 112-113 and combinations of all of them 113-115). After introducing examples of alkanes, alkenes, alkynes and combinations of them, the functional groups are presented in order of priority. A few nomenclature examples are provided for each of the functional groups. Examples of the various functional groups are presented on pages 115-135 in the textbook. Two overview pages are on pages 136-137. Some functional groups have a suffix name when they are the highest priority functional group and a prefix name when they are not the highest priority group, and these are added to the skeletal names with identifying numbers and stereochemistry terms (E and Z for alkenes, R and S for chiral centers and cis and trans for rings). Several low priority functional groups only have a prefix name. A few additional special patterns are shown on pages 98-102. The only way to learn this topic is practice (over and over). The best practice approach is to actually write out the names (on an extra piece of paper or on a white board, and then do it again). The same functional groups are used throughout the entire course. -
And Intermolecular Addition of Carboxylic Acids to Alkynes in Aqueous Media: a Review
catalysts Review Metal-Catalyzed Intra- and Intermolecular Addition of Carboxylic Acids to Alkynes in Aqueous Media: A Review Javier Francos and Victorio Cadierno * Laboratorio de Compuestos Organometálicos y Catálisis (Unidad Asociada al CSIC), Centro de Innovación en Química Avanzada (ORFEO-CINQA), Departamento de Química Orgánica e Inorgánica, IUQOEM, Facultad de Química, Universidad de Oviedo, Julián Clavería 8, E-33006 Oviedo, Spain; [email protected] * Correspondence: [email protected]; Tel.: +34-985-103453 Received: 19 October 2017; Accepted: 2 November 2017; Published: 6 November 2017 Abstract: The metal-catalyzed addition of carboxylic acids to alkynes is a very effective tool for the synthesis of carboxylate-functionalized olefinic compounds in an atom-economical manner. Thus, a large variety of synthetically useful lactones and enol-esters can be accessed through the intra- or intermolecular versions of this process. In order to reduce the environmental impact of these reactions, considerable efforts have been devoted in recent years to the development of catalytic systems able to operate in aqueous media, which represent a real challenge taking into account the tendency of alkynes to undergo hydration in the presence of transition metals. Despite this, different Pd, Pt, Au, Cu and Ru catalysts capable of promoting the intra- and intermolecular addition of carboxylic acids to alkynes in a selective manner in aqueous environments have appeared in the literature. In this review article, an overview of this chemistry is provided. The synthesis of b-oxo esters by catalytic addition of carboxylic acids to terminal propargylic alcohols in water is also discussed. Keywords: aqueous catalysis; alkynes; carboxylic acids; alkynoic acids; hydrocarboxylation reactions; cycloisomerization reactions; enol esters; lactones; b-oxo esters 1. -
Naming Ethers and Thiols (Naming and Properties)
Ethers • Contain an ─O─ between two carbon groups. • That are simple are named by listing the alkyl names in alphabetical order followed by ether Cyclic ethers (heterocyclic compounds) are often given common names. DO NOT memorize! IUPAC Names for Ethers The shorter alkyl group and the oxygen are named as an alkoxy group attached to the longer hydrocarbon. methoxy propane CH3—O—CH2—CH2—CH3 1 2 3 Numbering the longer alkane gives: 1-methoxypropane Treat all R-O- groups that you find in a molecule as alkoxy groups or branches (substituents), and follow the previous rules we’ve covered for all other families. Properties of Ethers • Slightly polar. • Cannot be H-bond donors. • Are H-bond acceptors (soluble in water up to 4 C’s). • Simple ethers are highly flammable (many form explosive peroxides). Anesthetics • Inhibit pain signals to the brain. • Such as ethyl ether CH3─CH2─O─CH2─CH3 were used for over a century, but caused nausea and were flammable. • Developed by 1960s were nonflammable. Cl F F Cl F H │ │ │ │ │ │ H─C─C─O─C─H H─C─C─O─C─H │ │ │ │ │ │ F F F H F H Ethane(enflurane) Penthrane Methyl tert-butyl ether (MTBE) • Is one of the most produced organic chemicals. • Is a fuel additive used to improve gasoline combustion. • Use is questioned since the discovery that MTBE has contaminated water supplies. Reyes Free to copy for educational purposes Thiols Thiols or mercaptans, are sulfur analogs of alcohols. (The –SH group is called the mercapto, or sulfhydryl group.) The IUPAC nomenclature system adds the ending –thiol to the name of the alkane, but without dropping the final –e. -
Interplay of Hydrophobic Thiol and Polar Epoxy Silicate Groups on Microstructural Development in Low-Alcohol, Crosslinked Sol–Gel Coatings for Corrosion Prevention
coatings Article Interplay of Hydrophobic Thiol and Polar Epoxy Silicate Groups on Microstructural Development in Low-Alcohol, Crosslinked Sol–Gel Coatings for Corrosion Prevention Shegufa Shetranjiwalla * , Andrew J. Vreugdenhil and Oliver Strong Department of Chemistry, Inorganic Materials Research Laboratory, Trent University, 1600 West Bank Drive, Peterborough, ON K9L 0G2, Canada; [email protected] (A.J.V.); [email protected] (O.S.) * Correspondence: [email protected]; Tel.: +1-705-748-1011 (ext. 7319) Abstract: We have demonstrated that our patented, crosslinked, sol–gel, epoxy–thiol silicates made from the combination of (a) tetraethoxysilane (TEOS, T), 3-glycidoxypropyltrimethoxysilane (GPTMS, G), and the (b) sulfur-containing 3-mercaptopropyltrimethoxysilane (MPTMS, S) with TEOS in a 1:1 stoichiometric ratio form the 1:1 TGST (crosslinked epoxy and thiol silicates) coating, which can be successfully utilized for the corrosion protection of low-carbon steel. Alcohols that are a by-product of sol–gel reactions influence the network formation, crosslinking density, and formulation stability, are volatile organic contents, and are regulated in the coatings industry. To improve environmental sustainability, a series of low-alcohol (LA) formulations with TG:ST ratios of 3:1 to 1:3 was prepared to investigate the microstructural development and crosslinking reactions emerging from the interplay of the hydrophobic thiol and polar epoxy silicates induced by the low-alcohol environment. The Citation: Shetranjiwalla, S.; impact on crosslinking density was characterized by Fourier Transform Infrared (FTIR), Raman, XPS, Vreugdenhil, A.J.; Strong, O. Interplay viscosity, and pot-life measurements. Low-alcohol TGST (LA(TGST)) formulations were compared, of Hydrophobic Thiol and Polar Epoxy Silicate Groups on using the example of 1:1 TGST, to corresponding TGST formulations where alcohols were retained. -
Catalysis of Peroxide Reduction by Fast Reacting Protein Thiols Focus Review †,‡ †,‡ ‡,§ ‡,§ ∥ Ari Zeida, Madia Trujillo, Gerardo Ferrer-Sueta, Ana Denicola, Darío A
Review Cite This: Chem. Rev. 2019, 119, 10829−10855 pubs.acs.org/CR Catalysis of Peroxide Reduction by Fast Reacting Protein Thiols Focus Review †,‡ †,‡ ‡,§ ‡,§ ∥ Ari Zeida, Madia Trujillo, Gerardo Ferrer-Sueta, Ana Denicola, Darío A. Estrin, and Rafael Radi*,†,‡ † ‡ § Departamento de Bioquímica, Centro de Investigaciones Biomedicaś (CEINBIO), Facultad de Medicina, and Laboratorio de Fisicoquímica Biologica,́ Facultad de Ciencias, Universidad de la Republica,́ 11800 Montevideo, Uruguay ∥ Departamento de Química Inorganica,́ Analítica y Química-Física and INQUIMAE-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, 2160 Buenos Aires, Argentina ABSTRACT: Life on Earth evolved in the presence of hydrogen peroxide, and other peroxides also emerged before and with the rise of aerobic metabolism. They were considered only as toxic byproducts for many years. Nowadays, peroxides are also regarded as metabolic products that play essential physiological cellular roles. Organisms have developed efficient mechanisms to metabolize peroxides, mostly based on two kinds of redox chemistry, catalases/peroxidases that depend on the heme prosthetic group to afford peroxide reduction and thiol-based peroxidases that support their redox activities on specialized fast reacting cysteine/selenocysteine (Cys/Sec) residues. Among the last group, glutathione peroxidases (GPxs) and peroxiredoxins (Prxs) are the most widespread and abundant families, and they are the leitmotif of this review. After presenting the properties and roles of different peroxides in biology, we discuss the chemical mechanisms of peroxide reduction by low molecular weight thiols, Prxs, GPxs, and other thiol-based peroxidases. Special attention is paid to the catalytic properties of Prxs and also to the importance and comparative outlook of the properties of Sec and its role in GPxs. -
Thiol–Ene Click Reaction Initiated Rapid Gelation of PEGDA/Silk Fibroin Hydrogels
polymers Article Thiol–Ene Click Reaction Initiated Rapid Gelation of PEGDA/Silk Fibroin Hydrogels Jianwei Liang, Xiaoning Zhang * , Zhenyu Chen, Shan Li and Chi Yan State Key Laboratory of Silkworm Genome Biology, College of Biotechnology, Southwest University, Chongqing 400715, China; [email protected] (J.L.); [email protected] (Z.C.); [email protected] (S.L.); [email protected] (C.Y.) * Correspondence: [email protected]; Tel.: +86-1592-281-5612 Received: 7 October 2019; Accepted: 12 December 2019; Published: 14 December 2019 Abstract: In this work, poly(ethylene glycol) diacrylate (PEGDA) molecules were grafted to silk fibroin (SF) molecules via a thiol–ene click reaction under 405 nm UV illumination for the fabrication of a PEGDA/SF composite hydrogel. The composite hydrogels could be prepared in a short and controllable gelation time without the use of a photoinitiator. Features relevant to the drug delivery of the PEGDA/SF hydrogels were assessed, and the hydrogels were characterized by various techniques. The results showed that the prepared PEGDA/SF hydrogels demonstrated a good sustained-release performance with limited swelling behavior. It was found that a prior cooling step can improve the compressive strength of the hydrogels effectively. Additionally, the MTT assay indicated the prepared PEGDA/SF hydrogel is non-cytotoxic. Subcutaneous implantation of the PEGDA/SF hydrogel in Kunming mice did not induce an obvious inflammation, which revealed that the prepared PEGDA/SF hydrogel possessed good biocompatibility. Furthermore, the mechanism of the gelation process was discussed. Keywords: silk fibroin; PEGDA; thiol–ene click reaction; gelation; drug delivery 1. Introduction It is well known that qualified biomaterials shall possess good mechanical properties and biological compatibility [1]. -
Thiol–Ene Photopolymerization: Scaling Law and Analytical Formulas for Conversion Based on Kinetic Rate and Thiol–Ene Molar Ratio
polymers Article Thiol–Ene Photopolymerization: Scaling Law and Analytical Formulas for Conversion Based on Kinetic Rate and Thiol–Ene Molar Ratio Kuo-Ti Chen 1, Da-Chuan Cheng 2, Jui-Teng Lin 3 and Hsia-Wei Liu 4,* 1 Graduate Institute of Applied Science and Engineering, Fu Jen Catholic University, New Taipei City 24205, Taiwan; [email protected] 2 Department of Biomedical Imaging and Radiological Science, China Medical University, Taizhong 400, Taiwan; [email protected] 3 New Vision, Inc., New Taipei City 242, Taiwan; [email protected] 4 Department of Life Science, Fu Jen Catholic University, New Taipei City 24205, Taiwan * Correspondence: [email protected]; Tel.: +886-0910-688-968 Received: 22 September 2019; Accepted: 7 October 2019; Published: 10 October 2019 Abstract: Kinetics and analytical formulas for radical-mediated thiol–ene photopolymerization were developed in this paper. The conversion efficacy of thiol–ene systems was studied for various propagation to chain transfer kinetic rate-ratio (RK), and thiol–ene concentration molar-ratio (RC). Numerical data were analyzed using analytical formulas and compared with the experimental data. We demonstrated that our model for a thiol–acrylate system with homopolymerization effects, and for a thiol–norbornene system with viscosity effects, fit much better with the measured data than a previous model excluding these effects. The general features for the roles of RK and RC on the conversion efficacy of thiol (CT) and ene (CV) are: (i) for RK = 1, CV and CT have the same temporal profiles, but have a reversed dependence on RC; (ii) for RK >> 1, CT are almost independent of RC; (iii) for RK << 1, CV and CT have the same profiles and both are decreasing functions of the homopolymerization effects defined by kCV; (iv) viscosity does not affect the efficacy in the case of RK >> 1, but reduces the efficacy of CV for other values of RK.