Two Earth-Tongue Genera New for Turkey
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Appendix K. Survey and Manage Species Persistence Evaluation
Appendix K. Survey and Manage Species Persistence Evaluation Establishment of the 95-foot wide construction corridor and TEWAs would likely remove individuals of H. caeruleus and modify microclimate conditions around individuals that are not removed. The removal of forests and host trees and disturbance to soil could negatively affect H. caeruleus in adjacent areas by removing its habitat, disturbing the roots of host trees, and affecting its mycorrhizal association with the trees, potentially affecting site persistence. Restored portions of the corridor and TEWAs would be dominated by early seral vegetation for approximately 30 years, which would result in long-term changes to habitat conditions. A 30-foot wide portion of the corridor would be maintained in low-growing vegetation for pipeline maintenance and would not provide habitat for the species during the life of the project. Hygrophorus caeruleus is not likely to persist at one of the sites in the project area because of the extent of impacts and the proximity of the recorded observation to the corridor. Hygrophorus caeruleus is likely to persist at the remaining three sites in the project area (MP 168.8 and MP 172.4 (north), and MP 172.5-172.7) because the majority of observations within the sites are more than 90 feet from the corridor, where direct effects are not anticipated and indirect effects are unlikely. The site at MP 168.8 is in a forested area on an east-facing slope, and a paved road occurs through the southeast part of the site. Four out of five observations are more than 90 feet southwest of the corridor and are not likely to be directly or indirectly affected by the PCGP Project based on the distance from the corridor, extent of forests surrounding the observations, and proximity to an existing open corridor (the road), indicating the species is likely resilient to edge- related effects at the site. -
4118880.Pdf (10.47Mb)
Multigene Molecular Phylogeny and Biogeographic Diversification of the Earth Tongue Fungi in the Genera Cudonia and Spathularia (Rhytismatales, Ascomycota) The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Ge, Zai-Wei, Zhu L. Yang, Donald H. Pfister, Matteo Carbone, Tolgor Bau, and Matthew E. Smith. 2014. “Multigene Molecular Phylogeny and Biogeographic Diversification of the Earth Tongue Fungi in the Genera Cudonia and Spathularia (Rhytismatales, Ascomycota).” PLoS ONE 9 (8): e103457. doi:10.1371/journal.pone.0103457. http:// dx.doi.org/10.1371/journal.pone.0103457. Published Version doi:10.1371/journal.pone.0103457 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:12785861 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA Multigene Molecular Phylogeny and Biogeographic Diversification of the Earth Tongue Fungi in the Genera Cudonia and Spathularia (Rhytismatales, Ascomycota) Zai-Wei Ge1,2,3*, Zhu L. Yang1*, Donald H. Pfister2, Matteo Carbone4, Tolgor Bau5, Matthew E. Smith3 1 Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China, 2 Harvard University Herbaria and Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, United States of America, 3 Department of Plant Pathology, University of Florida, Gainesville, Florida, United States of America, 4 Via Don Luigi Sturzo 173, Genova, Italy, 5 Institute of Mycology, Jilin Agriculture University, Changchun, Jilin, China Abstract The family Cudoniaceae (Rhytismatales, Ascomycota) was erected to accommodate the ‘‘earth tongue fungi’’ in the genera Cudonia and Spathularia. -
Preliminary Classification of Leotiomycetes
Mycosphere 10(1): 310–489 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/7 Preliminary classification of Leotiomycetes Ekanayaka AH1,2, Hyde KD1,2, Gentekaki E2,3, McKenzie EHC4, Zhao Q1,*, Bulgakov TS5, Camporesi E6,7 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 4Landcare Research Manaaki Whenua, Private Bag 92170, Auckland, New Zealand 5Russian Research Institute of Floriculture and Subtropical Crops, 2/28 Yana Fabritsiusa Street, Sochi 354002, Krasnodar region, Russia 6A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy. 7A.M.B. Circolo Micologico “Giovanni Carini”, C.P. 314 Brescia, Italy. Ekanayaka AH, Hyde KD, Gentekaki E, McKenzie EHC, Zhao Q, Bulgakov TS, Camporesi E 2019 – Preliminary classification of Leotiomycetes. Mycosphere 10(1), 310–489, Doi 10.5943/mycosphere/10/1/7 Abstract Leotiomycetes is regarded as the inoperculate class of discomycetes within the phylum Ascomycota. Taxa are mainly characterized by asci with a simple pore blueing in Melzer’s reagent, although some taxa have lost this character. The monophyly of this class has been verified in several recent molecular studies. However, circumscription of the orders, families and generic level delimitation are still unsettled. This paper provides a modified backbone tree for the class Leotiomycetes based on phylogenetic analysis of combined ITS, LSU, SSU, TEF, and RPB2 loci. In the phylogenetic analysis, Leotiomycetes separates into 19 clades, which can be recognized as orders and order-level clades. -
Cudonia Circinans (Persoon) Fries Cudonie Circulaire J Eon-Luc Muller
18 Cudonia circinans (Persoon) Fries Cudonie circulaire J eon-Luc Muller Cudonia circinans (Persoon ex Fries) Fries (= Leot;a c;rc;nans Persoon) Taxonomie Règne: Fung; Division: Ascomycota S/division : Pez;zomycotina Classe: Leot;omycetes Ordre: Rhytismatales Famille: Cudon;aceae Note taxonomique: En 2001, une nouvelle description a été effectuée par Cannon sur la Famille Cudoniaceae (comprenant les gemes Cudonia et Spathularia) qui la plaça dans l'ordre des Helotiales. Pourtant, suite à des études phylogéniques récentes, celle-ci a été définitivement intégrée dans l'ordre des Rhytismatales (Mycologia - NovlDec 2006). Ethymologie : Du latin circinans qui signifie "arrondie" faisant clairement référence à la forme du chapeau. Fructification : 2 à 6 cm de hauteur. Le pied, de 2 à 4(5) cm de haut avec un diamètre d'environ 2 à 6 mm, est ocre pâle et légère ment plus foncé (brun-rougeâtre) vers une base plutôt évasée. Il est fréquemment comprimé verticalement, sillonné et finement squamuleux. La tête fertile arrondie, de 1 à 2 cm de large, est quelquefois légèrement cérébriforme avec une marge emoulée. Sa surface peut-être lisse ou ridée, ocre pâle à beige nuancé de rose-lilas. Chair ferme, mince, plutôt tenace ou coriace en séchant, non gélatineuse contrairement à Leo fia lubrica son (presque) sosie. 19 Habitat: grégaires, sur lit d'aiguilles dans les pessières. Nos exemplaires proviennent d'une station de Thollon -les - Mémises, située à 2000 m d'altitude. D'août à septembre. Grégaire, parfois même en troupes très nombreuses. Comestibilité: Vénéneux, du moins cru. Contient du monométhylhydrazine (MMH), une substance très volatile, cancérogène puissant, produit d'hydrolyse de la gyromitrine. -
9B Taxonomy to Genus
Fungus and Lichen Genera in the NEMF Database Taxonomic hierarchy: phyllum > class (-etes) > order (-ales) > family (-ceae) > genus. Total number of genera in the database: 526 Anamorphic fungi (see p. 4), which are disseminated by propagules not formed from cells where meiosis has occurred, are presently not grouped by class, order, etc. Most propagules can be referred to as "conidia," but some are derived from unspecialized vegetative mycelium. A significant number are correlated with fungal states that produce spores derived from cells where meiosis has, or is assumed to have, occurred. These are, where known, members of the ascomycetes or basidiomycetes. However, in many cases, they are still undescribed, unrecognized or poorly known. (Explanation paraphrased from "Dictionary of the Fungi, 9th Edition.") Principal authority for this taxonomy is the Dictionary of the Fungi and its online database, www.indexfungorum.org. For lichens, see Lecanoromycetes on p. 3. Basidiomycota Aegerita Poria Macrolepiota Grandinia Poronidulus Melanophyllum Agaricomycetes Hyphoderma Postia Amanitaceae Cantharellales Meripilaceae Pycnoporellus Amanita Cantharellaceae Abortiporus Skeletocutis Bolbitiaceae Cantharellus Antrodia Trichaptum Agrocybe Craterellus Grifola Tyromyces Bolbitius Clavulinaceae Meripilus Sistotremataceae Conocybe Clavulina Physisporinus Trechispora Hebeloma Hydnaceae Meruliaceae Sparassidaceae Panaeolina Hydnum Climacodon Sparassis Clavariaceae Polyporales Gloeoporus Steccherinaceae Clavaria Albatrellaceae Hyphodermopsis Antrodiella -
A Taxonomic and Phylogenetic Investigation of Conifer Endophytes
A Taxonomic and Phylogenetic Investigation of Conifer Endophytes of Eastern Canada by Joey B. Tanney A thesis submitted to the Faculty of Graduate and Postdoctoral Affairs in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Biology Carleton University Ottawa, Ontario © 2016 Abstract Research interest in endophytic fungi has increased substantially, yet is the current research paradigm capable of addressing fundamental taxonomic questions? More than half of the ca. 30,000 endophyte sequences accessioned into GenBank are unidentified to the family rank and this disparity grows every year. The problems with identifying endophytes are a lack of taxonomically informative morphological characters in vitro and a paucity of relevant DNA reference sequences. A study involving ca. 2,600 Picea endophyte cultures from the Acadian Forest Region in Eastern Canada sought to address these taxonomic issues with a combined approach involving molecular methods, classical taxonomy, and field work. It was hypothesized that foliar endophytes have complex life histories involving saprotrophic reproductive stages associated with the host foliage, alternative host substrates, or alternate hosts. Based on inferences from phylogenetic data, new field collections or herbarium specimens were sought to connect unidentifiable endophytes with identifiable material. Approximately 40 endophytes were connected with identifiable material, which resulted in the description of four novel genera and 21 novel species and substantial progress in endophyte taxonomy. Endophytes were connected with saprotrophs and exhibited reproductive stages on non-foliar tissues or different hosts. These results provide support for the foraging ascomycete hypothesis, postulating that for some fungi endophytism is a secondary life history strategy that facilitates persistence and dispersal in the absence of a primary host. -
A Multigene Phylogeny Toward a New Phylogenetic Classification of Leotiomycetes Peter R
Johnston et al. IMA Fungus (2019) 10:1 https://doi.org/10.1186/s43008-019-0002-x IMA Fungus RESEARCH Open Access A multigene phylogeny toward a new phylogenetic classification of Leotiomycetes Peter R. Johnston1* , Luis Quijada2, Christopher A. Smith1, Hans-Otto Baral3, Tsuyoshi Hosoya4, Christiane Baschien5, Kadri Pärtel6, Wen-Ying Zhuang7, Danny Haelewaters2,8, Duckchul Park1, Steffen Carl5, Francesc López-Giráldez9, Zheng Wang10 and Jeffrey P. Townsend10 Abstract Fungi in the class Leotiomycetes are ecologically diverse, including mycorrhizas, endophytes of roots and leaves, plant pathogens, aquatic and aero-aquatic hyphomycetes, mammalian pathogens, and saprobes. These fungi are commonly detected in cultures from diseased tissue and from environmental DNA extracts. The identification of specimens from such character-poor samples increasingly relies on DNA sequencing. However, the current classification of Leotiomycetes is still largely based on morphologically defined taxa, especially at higher taxonomic levels. Consequently, the formal Leotiomycetes classification is frequently poorly congruent with the relationships suggested by DNA sequencing studies. Previous class-wide phylogenies of Leotiomycetes have been based on ribosomal DNA markers, with most of the published multi-gene studies being focussed on particular genera or families. In this paper we collate data available from specimens representing both sexual and asexual morphs from across the genetic breadth of the class, with a focus on generic type species, to present a phylogeny based on up to 15 concatenated genes across 279 specimens. Included in the dataset are genes that were extracted from 72 of the genomes available for the class, including 10 new genomes released with this study. To test the statistical support for the deepest branches in the phylogeny, an additional phylogeny based on 3156 genes from 51 selected genomes is also presented. -
Die Familie Der Erdzungen (Ge - Kennzeichnet
Die Familiie deer Erdzuunnggeen K. Montag, red. keine Speisepilze in diesem Beitrag 5Gemeine Haarzunge Trichoglossum hirsutum 4 Trockene Erdzunge Geoglossum cookeianum Beide Fotos: MARkuS WILHELM Erdzungen und ihre Verwandten sind seltene und schützenswerte kostbar - keiten, die teilweise in offenem, unge - düngtem Grasland wachsen, aber auch an bewaldeten Standorten und an Gewässern. Wer sie finden möchte, muss schon ein bißchen genauer hin - sehen und wer die einzelnen Arten, insbesondere die der Gattung Ge - Die Familie Geoglossaceae (Erdzungenverwandte) gehört oglossum, säuberlich auseinanderhal - zu den Schlauchpilzen (Ascomycetes) und hier insbeson - ten will, muss sich unbedingt eines dere zu den inoperculaten Ascomyceten. Diese Ordnung Mikroskopes bedienen. (Helotiales) ist dadurch gekennzeichnet, dass die reifen In dieser Arbeit soll aber weniger auf Sporen durch einen komplexen, mit Melzers Reagenz oder die oft subtilen und fließenden mikro - Lugolscher Lösung anfärbbarem Apikalapparat aus dem skopischen unterscheidungsmerk - Ascus entlassen werden. male der einzelnen Arten eingegangen Im Gegensatz dazu haben die Pezizales am Scheitel ein werden, sondern es soll primär ein Au - Deckelchen, das sich bei der Sporenreife öffnet. Diese genmerk darauf gelegt werden, was nennt man operculate Ascomyceten (von Operculum , lat. überhaupt zur Familie gehört und was = Deckel). diese Zugehörigkeit im Einzelnen Im engen Sinn besteht die Familie der Erdzungen (Ge - kennzeichnet. oglossaceae) aus drei Gattungen: Der Tintling 3 (2010) Seite 43 Schwarze Erdzunge Die Trockene Erdzunge 1. Geoglossum , Erdzunge. Das ist die Ty - Geoglossum umbratile G. cookeianum hat pusgattung der Familie Geoglossaceae Foto: MARkuS WILHELM ebenfalls solche typisch und sie wurde von CHRISTIAAn HEnDRIk Geoglossum barlae wird verbogenen Paraphy - PERSOOn (1761-1836) 1794 beschrieben, - wie auch G. nigritum - sen, dann aber meist bevor ELIAS MAGnuS FRIES sie 1821 sank - heute als Synonym zu mehr im Stielbereich. -
Downloaded from Mycoportal (2020)
Provided for non-commercial research and educational use. Not for reproduction, distribution or commercial use. This article was originally published in the Encyclopedia of Mycology published by Elsevier, and the attached copy is provided by Elsevier for the author's benefit and for the benefit of the author's institution, for non-commercial research and educational use, including without limitation, use in instruction at your institution, sending it to specific colleagues who you know, and providing a copy to your institution's administrator. All other uses, reproduction and distribution, including without limitation, commercial reprints, selling or licensing copies or access, or posting on open internet sites, your personal or institution's website or repository, are prohibited. For exceptions, permission may be sought for such use through Elsevier's permissions site at: https://www.elsevier.com/about/policies/copyright/permissions Quandt, C. Alisha and Haelewaters, Danny (2021) Phylogenetic Advances in Leotiomycetes, an Understudied Clade of Taxonomically and Ecologically Diverse Fungi. In: Zaragoza, O. (ed) Encyclopedia of Mycology. vol. 1, pp. 284–294. Oxford: Elsevier. http://dx.doi.org/10.1016/B978-0-12-819990-9.00052-4 © 2021 Elsevier Inc. All rights reserved. Author's personal copy Phylogenetic Advances in Leotiomycetes, an Understudied Clade of Taxonomically and Ecologically Diverse Fungi C Alisha Quandt, University of Colorado, Boulder, CO, United States Danny Haelewaters, Purdue University, West Lafayette, IN, United States; Ghent University, Ghent, Belgium; Universidad Autónoma ̌ de Chiriquí, David, Panama; and University of South Bohemia, Ceské Budejovice,̌ Czech Republic r 2021 Elsevier Inc. All rights reserved. Introduction The class Leotiomycetes represents a large, diverse group of Pezizomycotina, Ascomycota (LoBuglio and Pfister, 2010; Johnston et al., 2019) encompassing 6440 described species across 53 families and 630 genera (Table 1). -
Of Macrofungi Recorded from Singapore: Macritchie-Pierce
Annotated checklist of macrofungi recorded from Singapore: MacRitchie-Pierce F. Y. Tham and R. Watling QK 609.2 Tha.Mp 2017 Original from and digitized by National University of Singapore Libraries Original from and digitized by National University of Singapore Libraries Original from and digitized by National University of Singapore Libraries Original from and digitized by National University of Singapore Libraries Annotated checklist of macrofungi recorded from Singapore: MacRitchie-Pierce F. Y. Tham and R. Watling Original from and digitized by National University of Singapore Libraries Copyright © 2017 F. Y. Tham and R. Watling Email: [email protected] All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted, in any form or by any means (electronic, mechanical, photocopying, recording or otherwise), without the prior written permission of the authors. ISBN: 978-981-11-3805-8 Printed In Singapore Original from and digitized by National University of Singapore Libraries Abbreviations aff. affinis b/w black and white cf. conferre comb. nov. combinatio nova det. determinavit f. form FB fruitbody fig- figure herb herbarium id. idem incl. including leg. legit no. number q.v. quod vide P- page pp. pages PI. plate ser. series s.l. sensu lato s.n. sine numero spp species s. str. sensu stricto subsp. subspecies tr. tribe var. variety v Original from and digitized by National University of Singapore Libraries Original from and digitized by National University of Singapore Libraries -
Sandnes.Pdf (1019.Kb)
Phylogenetic relationships among species and genera of Geoglossaceae (Helotiales) based on ITS and LSU nrDNA sequences Anne Cathrine Sønstebø Sandnes Cand. Scient. Thesis University of Oslo Department of Biology 2006 ACKNOWLEDGEMENTS Først av alt en stor takk til min veileder Trond Schumacher som har gjort det mulig for meg å skrive denne oppgaven. Takk for all hjelp og oppmuntring i denne prosessen. En stor takk går også til min biveileder Håvard som har vært til stor hjelp både praktisk og teoretisk. Takk for at du har vært tilgjengelig for meg og oppmuntret meg hele veien. Mange takk til Nanna for opplæring og hjelp på DNA lab og Emelita for god hjelp og koselig selskap på laben. En takk går og til Kenneth for sekvensering av prøvene. Tusen takk til John Bjarne Jordal som tok meg med i felt og med sin entusiasme viste meg soppene som jeg for det meste hadde lest om og bare sett fra tørt herbariemateriale. Tusen takk til Inke som gjorde det koselig å komme på lesesalen. Jeg savnet den gode stemningen da du ble ferdig og flyttet til Tromsø. Takk til studenter og andre venner som har gitt meg koselige pauser. En stor takk går også til venner og familie. Jørn Henrik som har holdt ut med mas, mange spørsmål og hjulpet til enhver tid. Mamma og pappa tusen takk for at dere har passet Marcus og gjort slik at jeg har hatt mulighet til å skrive utenom barnehagetid og mamma som kjørte inn til Oslo hver gang hun hadde fri fra jobb slik at jeg kunne få jobbe litt med oppgava mi. -
Voucher Report for the 2007 North American Mycological Association Foray
Volume 18, Number 1, 2009 55 Voucher Report for the 2007 North American Mycological Association Foray THE 48TH ANNUAL North American Myco- Adele Mehta (recorder), NAMA sponsored gradu- logical Association foray was held at Pipestem ate students Wyatt Gaswick, University of Illinois Resort State Park, West Virginia, on August 16–19, at Chicago, Matthew Kierle, University of Chicago, 2007, organized by the NAMA foray committee. Andrew M. Minnis, Southern Illinois University. There have been two previous NAMA forays in Also much thanks to Jerry Sheine for help with West Virginia, in 1977 and 1985. Participants ex- photography, and the other volunteers who gave plored a dozen state parks and other preserves in of their time. Special thanks to Donna Mitchell for southwestern West Virginia. The upland and bot- obtaining permits and compiling site information. tomland forests were made of various combina- Donna reports that six of these species are new tions of white oak, red oak, white pine, hemlock, state records for West Virginia. sugar maple, tulip poplar, rhododendron, beech, We thank the board and trustees of NAMA for and hickory, with lesser occurrences of birch, blue- their continued support of the voucher program. berry, chestnut oak, scarlet oak, sycamore, Virginia Thanks also go to mycology volunteer Alice Pilar pine, sourwood, and cedar. and our summer interns for processing specimens The resulting species list has 326 taxa (spe- in the herbarium. The NAMA 2007 specimens are cies, varieties, and some identified only to genus) accessioned into the permanent herbarium collec- comprising 65 ascomycetes (16 lichens), 242 ba- tion at the Field Museum of Natural History (F).