Merluccius Rafinesque, 1810 MERLU Merlu
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(Etp) Species Caught As Bycatch in Five Major South African Fisheries
MONITORING OF ENDANGERED, THREATENED AND PROTECTED (ETP) SPECIES CAUGHT AS BYCATCH IN FIVE MAJOR SOUTH AFRICAN FISHERIES Laura Weston and Colin Attwood Department of Biological Sciences University of Cape Town Private Bag X3 Rondebosch 7701 Prepared for The Responsible Fisheries Alliance December 2017 1 CONTENTS Executive Summary ................................................................................................................................. 4 1. Introduction .................................................................................................................................... 6 1.1 Project Background ................................................................................................................. 6 1.2 Background to the Fisheries ................................................................................................... 6 1.2.1 Offshore and Inshore Hake – the Demersal Trawl Fishery ............................................. 6 1.2.2 Hake Longline Fishery ..................................................................................................... 7 1.2.3 Horse Mackerel Midwater Trawl Fishery ........................................................................ 8 1.2.4 Tuna and Swordfish - the Pelagic Longline Fishery ......................................................... 9 1.3 The Issue of Bycatch .............................................................................................................. 10 1.4 The Definition of ETP Species............................................................................................... -
HAKES of the WORLD (Family Merlucciidae)
ISSN 1020-8682 FAO Species Catalogue for Fishery Purposes No. 2 HAKES OF THE WORLD (Family Merlucciidae) AN ANNOTATED AND ILLUSTRATED CATALOGUE OF HAKE SPECIES KNOWN TO DATE FAO Species Catalogue for Fishery Purposes No. 2 FIR/Cat. 2 HAKES OF THE WORLD (Family Merlucciidae) AN ANNOTATED AND ILLUSTRATED CATALOGUE OF HAKE SPECIES KNOWN TO DATE by D. Lloris Instituto de Ciencias del Mar (CMIMA-CSIC) Barcelona, Spain J. Matallanas Facultad de Ciencias Universidad Autónoma de Barcelona Bellaterra, Barcelona, Spain and P. Oliver Instituto Español de Oceanografia Palma de Mallorca, Spain FOOD AND AGRICULTURE ORGANIZATION OF THE UNITED NATIONS Rome, 2005 The designations employed and the presentation of material in this information product do not imply the expression of any opinion whatsoever on the part of the Food and Agriculture Organization of the United Nations concerning the legal status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries. ISBN 92-5-104984-X All rights reserved. Reproduction and dissemination of material in this information product for educational or other non-commercial purposes are authorized without any prior written permission from the copyright holders provided the source is fully acknowledged. Reproduction of material in this information product for resale or other commercial purposes is prohibited without written permission of the copyright holders. Applications for such permission should be addressed to the Chief, Publishing Management Service, Information Division, FAO, Viale delle Terme di Caracalla, 00100 Rome, Italy by e-mail to [email protected] © FAO 2005 Hakes of the World iii PREPARATION OF THIS DOCUMENT his catalogue was prepared under the FAO Fisheries Department Regular Programme by the Species Identification and TData Programme in the Marine Resources Service of the Fishery Resources Division. -
DEEP SEA LEBANON RESULTS of the 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project
DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project March 2018 DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project Citation: Aguilar, R., García, S., Perry, A.L., Alvarez, H., Blanco, J., Bitar, G. 2018. 2016 Deep-sea Lebanon Expedition: Exploring Submarine Canyons. Oceana, Madrid. 94 p. DOI: 10.31230/osf.io/34cb9 Based on an official request from Lebanon’s Ministry of Environment back in 2013, Oceana has planned and carried out an expedition to survey Lebanese deep-sea canyons and escarpments. Cover: Cerianthus membranaceus © OCEANA All photos are © OCEANA Index 06 Introduction 11 Methods 16 Results 44 Areas 12 Rov surveys 16 Habitat types 44 Tarablus/Batroun 14 Infaunal surveys 16 Coralligenous habitat 44 Jounieh 14 Oceanographic and rhodolith/maërl 45 St. George beds measurements 46 Beirut 19 Sandy bottoms 15 Data analyses 46 Sayniq 15 Collaborations 20 Sandy-muddy bottoms 20 Rocky bottoms 22 Canyon heads 22 Bathyal muds 24 Species 27 Fishes 29 Crustaceans 30 Echinoderms 31 Cnidarians 36 Sponges 38 Molluscs 40 Bryozoans 40 Brachiopods 42 Tunicates 42 Annelids 42 Foraminifera 42 Algae | Deep sea Lebanon OCEANA 47 Human 50 Discussion and 68 Annex 1 85 Annex 2 impacts conclusions 68 Table A1. List of 85 Methodology for 47 Marine litter 51 Main expedition species identified assesing relative 49 Fisheries findings 84 Table A2. List conservation interest of 49 Other observations 52 Key community of threatened types and their species identified survey areas ecological importanc 84 Figure A1. -
Merluccius Capensis) Across the Western Coast Of
SEASONAL TRANSBOUNDARY MOVEMENT OF CAPE HAKE (MERLUCCIUS CAPENSIS) ACROSS THE WESTERN COAST OF SOUTHERN AFRICA A THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE IN BIODIVERSITY MANAGEMENT OF THE UNIVERSITY OF NAMIBIA BY VERONICA KALEINASHO KAPULA 201075822 April 2018 MAIN SUPERVISOR: DR. H.ON. Ndjaula (University of Namibia) CO-SUPERVISOR: DR. R. Henriques (Stellenbosch University) ABSTRACT This study was conducted to investigate the patterns of genetic differentiation of Cape hake (Merluccius capensis) across Southern Africa, using eight nuclear microsatellite markers to understand the seasonal movements of the two previously identified stocks. The aim of the project was to assess the position of the genetic break in two different temporal sampling events: summer months (February – March) and winter months (June – August) and to investigate the level of genetic diversity for 2017. Individual fishes were chosen randomly from a pool of samples, covering the distribution from the Cunene River Mouth, in northern Namibia, to Cape Town in South Africa. Six main sampling sites were chosen based on latitude and their relative position regarding known oceanographic breaks: Northern Namibia, Central Namibia, Southern Namibia, Orange River, Central West Coast and Southern West Coast. Total genomic DNA was extracted using a standard chlorophorm: isopropanol method of Backeljau, Dewachter &Winnepenninckx (1993). The Polymerase Chain Reaction (PCR) amplification of a fragment of the Control Region (CR) of the mtDNA was done for species validation. A total of 533 individuals were screened for genetic variation at eight nuclear microsatellite loci. The results shows an overall Fixation index (FST ) = 0.160 for summer and FST = 0.112 for winter, which were statistically significant different from zero (p<0.05). -
Trophic Relationships of Hake (Merluccius Capensis and M
SoV 2.10 Trophic Relationships of Hake (Merluccius capensis and M. paradoxus) and Sharks (Centrophorus squamosus, Deania calcea and D. profundorum) in the Northern (Namibia) Benguela Current region Author(s): Johannes A Iitembu and Nicole B Richoux Source: African Zoology, 50(4):273-279. Published By: Zoological Society of Southern Africa URL: http://www.bioone.org/doi/full/10.1080/15627020.2015.1079142 BioOne (www.bioone.org) is a nonprofit, online aggregation of core research in the biological, ecological, and environmental sciences. BioOne provides a sustainable online platform for over 170 journals and books published by nonprofit societies, associations, museums, institutions, and presses. Your use of this PDF, the BioOne Web site, and all posted and associated content indicates your acceptance of BioOne’s Terms of Use, available at www.bioone.org/page/terms_of_use. Usage of BioOne content is strictly limited to personal, educational, and non-commercial use. Commercial inquiries or rights and permissions requests should be directed to the individual publisher as copyright holder. BioOne sees sustainable scholarly publishing as an inherently collaborative enterprise connecting authors, nonprofit publishers, academic institutions, research libraries, and research funders in the common goal of maximizing access to critical research. African Zoology 2015, 50(4): 273–279 Copyright © Zoological Society Printed in South Africa — All rights reserved of Southern Africa AFRICAN ZOOLOGY This is the final version of the article that is ISSN 1562-7020 EISSN 2224-073X published ahead of the print and online issue http://dx.doi.org/10.1080/15627020.2015.1079142 Trophic relationships of hake (Merluccius capensis and M. paradoxus) and sharks (Centrophorus squamosus, Deania calcea and D. -
Integrative Taxonomy, a New Tool for Fisheries Conservation
W&M ScholarWorks Presentations 10-9-2015 Integrative Taxonomy, a New Tool for Fisheries Conservation Adela Roa-Varon Virginia Institute of Marine Science Eric J. Hilton Virginia Institute of Marine Science Follow this and additional works at: https://scholarworks.wm.edu/presentations Part of the Aquaculture and Fisheries Commons, Biodiversity Commons, and the Zoology Commons Recommended Citation Roa-Varon, Adela and Hilton, Eric J.. "Integrative Taxonomy, a New Tool for Fisheries Conservation". 10-9-2015. VIMS 75th Anniversary Alumni Research Symposium. This Presentation is brought to you for free and open access by W&M ScholarWorks. It has been accepted for inclusion in Presentations by an authorized administrator of W&M ScholarWorks. For more information, please contact [email protected]. Integrave Taxonomy: a New Tool for Fisheries Conservaon Adela Roa-Varon and Eric Hilton Virginia InsFtute of Marine Science, William & Mary College [email protected], [email protected] What is Integrave Taxonomy? The Process of Integrave Results to Date Glossary Taxonomy Baits libraries were designed based on Species play a central role in nearly all candidate single-copy markers for disciplines of biology. Therefore delimitaon Gadus morhua genome, using the Species are the fundamental of species has broad implicaons for efforts taxonomic unit for a wide array of MYBaits target enrichment system. A biological studies and applied fields ranging from biological conservaon to preliminary analysis was run to test the such as conservaon planning. comparave evoluFonary analyses. The rise of baits using Merluccius bilinearis and new genomic and bioinformacs tools led for Gadus morhua as a posiFve control. Species delimitaon: the process of species delimitaon is becoming increasingly Approximately, 1500 to 3000 target idenFfying species-level biological objecFve and integrave. -
Evolutionary Divergence Between Sympatric Species of Southern African Hakes, Merluccius Capensis and M
Heredity 61(1988)13—20 The Genetical Society of Great Britain Received 17 September 1987 Evolutionary divergence between sympatric species of southern African Hakes, Merluccius capensis and M. paradoxus. I. Electrophoretic analysis of proteins W. Stewart Grant,* Department of Microbiology, University of Cape Inga I. Becker and Town, Rondebosch 7700, South Africa. t Sea Fisheries Research Institute, Private Bag X2, Rob W. Lesliet Rogge Bay 8012, South Africa. We estimated the amount of genetic divergence between two morphologically similar species of southern African hake, Merluccius capensis and M. paradoxus, with the electrophoretic analysis of proteins encoded by 31 loci. Nei's genetic distance between these taxa was 0•583 (±0.160) and is typical of evolutionary divergence between well differentiated congeneric species. We found no evidence of hybrid individuals. The mean heterozygosity over 13 samples of M. capensis was 0055 and over 10 samples of M. paradoxus was 0•067. The present sympatric distributions of these fish are most likely the result of secondary contact after speciation in allopatry or the result of repeated dispersals of ancestral populations of other Atlantic Ocean hakes to southern Africa, rather than the result of sympatric speciation. There were significant excesses of rare alleles in both species as compared with that expected for neutral alleles in species at drift-mutation equilibrium. Average heterozygosities, however, were not appreciably reduced in comparison with other marine fish. Using genetic distance and the assumptions of the molecular clock, we estimate that the lineages leading to these species diverged from one another between 7 and 13 million years ago. -
Synopsis Iconographique Des Otolithes De Quelques Espèces De Poissons Des Côtes Ouest Africaines
Synopsis iconographique des otolithes de quelques espèces de poissons des côtes ouest africaines Jan Veen et Kristiaan Hoedemakers VEDA consultancy Synopsis iconographique des otolithes de quelques espèces de poissons des côtes ouest africaines Jan Veen1, Kristiaan Hoedemakers2 1. VEDA consultancy, Wieselseweg 110, 7345 CC Wenum Wiesel, The Netherlands 2. Kristiaan Hoedemakers, Minervastraat 23, 2640 Mortsel, Belgium Wetlands International 2005 Copyright 2005 Wetlands International ISBN 9058829553 Cette publication doit être citée comme suit: Veen, J., Hoedemakers, K., 2005, Synopsis iconographique des otolithes de quelques espèces de poissons des côtes ouest africaines. Wageningen, The Netherlands. Publié par Wetlands International www.wetlands.org Dessins: Kristiaan Hoedemakers et Dirk Nolf. Tous droits réservés. Photos: Cindy van Damme, Alterra. Tous droits réservés. Texte: Jan Veen et Kristiaan Hoedemakers Lay-out: Kristiaan Hoedemakers Les données et désignations géographiques employées dans ce rapport n’impliquent en aucune manière une expression quelconque de l’opinion de la part de Wetlands International sur le statut légal d’un pays quel qu’il soit, d’une région ou d’un territoire, ou concernant la délimitation de ses limites ou frontières. Synopsis iconographique des otolithes de quelques espèces de poissons des côtes ouest africaines Organismes d’appui et de collaboration VEDA consultancy - research, advice and training in ecology and geography, The Netherlands VEDA consultancy Directorate General for International Co-operation, Ministry of Foreign Affairs, The Netherlands Directorate for Nature Management, Ministry of Agriculture, Nature and Food Quality, The Netherlands Financé par le Ministère de l’Agriculture, de la Nature et de la Qualité de l’Alimentation et le Ministère des Affaires Etrangères des Pays-Bas, dans le cadre du Programme Biodiversité de la Politique Internationale 2002-2006 des Pays-Bas. -
Biology and Fisheries of the Shallow-Water Hake (Merluccius Capensis) and the Deep-Water Hake (M
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/283086142 Biology and fisheries of the shallow-water hake (Merluccius capensis) and the deep-water hake (M. paradoxus) in Namibia Chapter · October 2015 DOI: 10.1002/9781118568262.ch3 CITATIONS READS 8 870 7 authors, including: Margit R. Wilhelm Carola Heidrun Kirchner University of Namibia Independent Fisheries consultant 23 PUBLICATIONS 106 CITATIONS 38 PUBLICATIONS 434 CITATIONS SEE PROFILE SEE PROFILE Jean-Paul Roux Astrid Jarre University of Cape Town University of Cape Town 71 PUBLICATIONS 2,254 CITATIONS 115 PUBLICATIONS 3,048 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Identification of ecto- and endo-parasites of mariculture potential candidate, Namibian Silver Kob (Argyrosomus inodorus) View project NansClim programme View project All content following this page was uploaded by Margit R. Wilhelm on 10 October 2017. The user has requested enhancement of the downloaded file. To cite as follows: Wilhelm, M.R., Kirchner, C.H., Roux, J.-P., Jarre, A., Iitembu, J.A., 70 Kathena, J.N. and Kainge, P. 2015. Biology and fisheries of the shallow-water hake (Merluccius capensis) and the deep-water hake (M. paradoxus) in Namibia. Chapter 3 In: Hakes: biology and exploitation, pp 70-100. Ed. by H. Arancibia. John Wiley & Sons, Ltd: Chichester, UK. DOI: 10.1002/9781118568262.ch3 Chapter 3 Biology and fisheries of the shallow-water hake (Merluccius capensis) and the deep- water hake (M. paradoxus) in Namibia Wilhelm, M. R.1, 6, Kirchner, C. H.2, Roux, J-P.3, 4, Jarre, A.1, Iitembu, J. -
Intrinsic Vulnerability in the Global Fish Catch
The following appendix accompanies the article Intrinsic vulnerability in the global fish catch William W. L. Cheung1,*, Reg Watson1, Telmo Morato1,2, Tony J. Pitcher1, Daniel Pauly1 1Fisheries Centre, The University of British Columbia, Aquatic Ecosystems Research Laboratory (AERL), 2202 Main Mall, Vancouver, British Columbia V6T 1Z4, Canada 2Departamento de Oceanografia e Pescas, Universidade dos Açores, 9901-862 Horta, Portugal *Email: [email protected] Marine Ecology Progress Series 333:1–12 (2007) Appendix 1. Intrinsic vulnerability index of fish taxa represented in the global catch, based on the Sea Around Us database (www.seaaroundus.org) Taxonomic Intrinsic level Taxon Common name vulnerability Family Pristidae Sawfishes 88 Squatinidae Angel sharks 80 Anarhichadidae Wolffishes 78 Carcharhinidae Requiem sharks 77 Sphyrnidae Hammerhead, bonnethead, scoophead shark 77 Macrouridae Grenadiers or rattails 75 Rajidae Skates 72 Alepocephalidae Slickheads 71 Lophiidae Goosefishes 70 Torpedinidae Electric rays 68 Belonidae Needlefishes 67 Emmelichthyidae Rovers 66 Nototheniidae Cod icefishes 65 Ophidiidae Cusk-eels 65 Trachichthyidae Slimeheads 64 Channichthyidae Crocodile icefishes 63 Myliobatidae Eagle and manta rays 63 Squalidae Dogfish sharks 62 Congridae Conger and garden eels 60 Serranidae Sea basses: groupers and fairy basslets 60 Exocoetidae Flyingfishes 59 Malacanthidae Tilefishes 58 Scorpaenidae Scorpionfishes or rockfishes 58 Polynemidae Threadfins 56 Triakidae Houndsharks 56 Istiophoridae Billfishes 55 Petromyzontidae -
Phylogenetic Prospecting for Cryptic Species of the Genus Merluccius (Actinopterygii: Merlucciidae)
Phylogenetic prospecting for cryptic species of the genus Merluccius (Actinopterygii: Merlucciidae) Montse Pérez1, María Fernández-Míguez1,2, Jesús Matallanas3, Domingo Lloris4 and Pablo Presa2,* 1AquaCOV, Centro Oceanográfico de Vigo, Instituto Español de Oceanografía, 36390 Vigo, Spain. 2CIM-Universidad de Vigo, Laboratorio de Recursos Genéticos Marinos, Facultad de Biología, 36310 Vigo, Spain. 3Unidad de Zoología, Departamento de Biología Animal, Biología Vegetal y Ecología, Universidad Autónoma de Barcelona, 08193, Spain. 4Institut de Ciències del Mar (CMIMA-CSIC), Barcelona, 08003, Spain *[email protected] a b c Supplementary Figure S1. Principal Coordinates Analysis (PCoA) built after the molecular variation of ITS1 variants using GenAlEx v6.503 [79]; a) Old World (OW) hakes (orange symbols: M. merluccius, M. senegalensis, M. capensis, M. polli and M. paradoxus), New World (NW) hakes (yellow symbols: M. productus, M. gayi, M. angustimanus, M. australis, M. albidus, M. hubbsi and M. bilinearis), and Atlantic cod (black symbol, Gadus morhua); b) Atlantic NW hakes (green symbols: M. albidus and M. bilinearis), Pacific NW hakes (blue symbols: M. australis, M. angustimanus, M. productus c) PCoA built after the molecular variation of ITS1Nes variants from Atlantic NW hakes (green symbols, M. albidus, M. bilinearis), Pacific NW hakes (blue symbols: M. angustimanus, M. productus, M. gayi), Austral NW hakes (orange symbols, M. hubbsi and M. australis) and morphotypes (red circled blue symbols: M. tasmanicus, M. patagonicus and M. polylepis). The European hake (merl, Merluccius merluccius) is the outgroup. a b Supplementary Figure S2. Phylogenetic reconstruction on ITS1 variants from genus Merluccius spp. using the substitution model HKY85+I+G. a) ML (-lnL = 1285.511) performed with PAUP v4.0 [84]). -
Fish 10000 Genomes Project
bioRxiv preprint doi: https://doi.org/10.1101/787028; this version posted September 30, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Initial data release and announcement of the Fish10K: Fish 10,000 Genomes Project Guanngyi Fan1,5,*, Yue Song1,*, Xiaoyun Huang1,*, Liandong Yang2,*, Suyu Zhang1, Mengqi Zhang1, Xianwei Yang1, Yue Chang1, He Zhang1,5, Yongxin Li3, Shanshan Liu1, Lili Yu1, Inge Seim8,9, Chenguang Feng3, Wen Wang3, Kun Wang3, Jing Wang4,6,7, Xun Xu5, Huanming Yang1,5, Nansheng Chen4,6,7,†, Xin Liu1,5,† & Shunping He2,†. 1BGI-Qingdao, BGI-Shenzhen, Qingdao 266555, China 2Key Laboratory of Aquatic Biodiversity and Conservation, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, China 3Center for Ecological and Environmental Sciences, Northwestern Polytechnical University, Xi’an, China. 4CAS Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, Shandong 266071, China 5BGI-Shenzhen, Shenzhen 518083, China 6Marine Ecology and Environmental Science Laboratory, Pilot National Laboratory for Marine Science and Technology (Qingdao), Qingdao, Shandong 266237, PR China 7Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, Shandong 266400, PR China 8Integrative Biology Laboratory, College of Life Sciences, Nanjing Normal University, Nanjing 210023, China; 9Comparative and Endocrine Biology Laboratory, Translational Research Institute-Institute of Health and Biomedical Innovation, School of Biomedical Sciences, Queensland University of Technology, Brisbane 4102, Queensland, 1 bioRxiv preprint doi: https://doi.org/10.1101/787028; this version posted September 30, 2019.