Identifying AGRRA Corals: Part 4 Branching and Nodular Corals
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Unfolding the Secrets of Coral–Algal Symbiosis
The ISME Journal (2015) 9, 844–856 & 2015 International Society for Microbial Ecology All rights reserved 1751-7362/15 www.nature.com/ismej ORIGINAL ARTICLE Unfolding the secrets of coral–algal symbiosis Nedeljka Rosic1, Edmund Yew Siang Ling2, Chon-Kit Kenneth Chan3, Hong Ching Lee4, Paulina Kaniewska1,5,DavidEdwards3,6,7,SophieDove1,8 and Ove Hoegh-Guldberg1,8,9 1School of Biological Sciences, The University of Queensland, St Lucia, Queensland, Australia; 2University of Queensland Centre for Clinical Research, The University of Queensland, Herston, Queensland, Australia; 3School of Agriculture and Food Sciences, The University of Queensland, St Lucia, Queensland, Australia; 4The Kinghorn Cancer Centre, Garvan Institute of Medical Research, Sydney, New South Wales, Australia; 5Australian Institute of Marine Science, Townsville, Queensland, Australia; 6School of Plant Biology, University of Western Australia, Perth, Western Australia, Australia; 7Australian Centre for Plant Functional Genomics, The University of Queensland, St Lucia, Queensland, Australia; 8ARC Centre of Excellence for Coral Reef Studies, The University of Queensland, St Lucia, Queensland, Australia and 9Global Change Institute and ARC Centre of Excellence for Coral Reef Studies, The University of Queensland, St Lucia, Queensland, Australia Dinoflagellates from the genus Symbiodinium form a mutualistic symbiotic relationship with reef- building corals. Here we applied massively parallel Illumina sequencing to assess genetic similarity and diversity among four phylogenetically diverse dinoflagellate clades (A, B, C and D) that are commonly associated with corals. We obtained more than 30 000 predicted genes for each Symbiodinium clade, with a majority of the aligned transcripts corresponding to sequence data sets of symbiotic dinoflagellates and o2% of sequences having bacterial or other foreign origin. -
Volume 2. Animals
AC20 Doc. 8.5 Annex (English only/Seulement en anglais/Únicamente en inglés) REVIEW OF SIGNIFICANT TRADE ANALYSIS OF TRADE TRENDS WITH NOTES ON THE CONSERVATION STATUS OF SELECTED SPECIES Volume 2. Animals Prepared for the CITES Animals Committee, CITES Secretariat by the United Nations Environment Programme World Conservation Monitoring Centre JANUARY 2004 AC20 Doc. 8.5 – p. 3 Prepared and produced by: UNEP World Conservation Monitoring Centre, Cambridge, UK UNEP WORLD CONSERVATION MONITORING CENTRE (UNEP-WCMC) www.unep-wcmc.org The UNEP World Conservation Monitoring Centre is the biodiversity assessment and policy implementation arm of the United Nations Environment Programme, the world’s foremost intergovernmental environmental organisation. UNEP-WCMC aims to help decision-makers recognise the value of biodiversity to people everywhere, and to apply this knowledge to all that they do. The Centre’s challenge is to transform complex data into policy-relevant information, to build tools and systems for analysis and integration, and to support the needs of nations and the international community as they engage in joint programmes of action. UNEP-WCMC provides objective, scientifically rigorous products and services that include ecosystem assessments, support for implementation of environmental agreements, regional and global biodiversity information, research on threats and impacts, and development of future scenarios for the living world. Prepared for: The CITES Secretariat, Geneva A contribution to UNEP - The United Nations Environment Programme Printed by: UNEP World Conservation Monitoring Centre 219 Huntingdon Road, Cambridge CB3 0DL, UK © Copyright: UNEP World Conservation Monitoring Centre/CITES Secretariat The contents of this report do not necessarily reflect the views or policies of UNEP or contributory organisations. -
Pulley Ridge, Gulf of Mexico, USA 4 John K
Pulley Ridge, Gulf of Mexico, USA 4 John K. Reed, Stephanie Farrington, Andy David, Stacey Harter, Shirley A. Pomponi, M. Cristina Diaz, Joshua D. Voss, Keith D. Spring, Albert C. Hine, Villy H. Kourafalou, Ryan H. Smith, Ana C. Vaz, Claire B. Paris, and M. Dennis Hanisak Abstract sponges had 1.2% cover. In the past 10 years, the Pulley Pulley Ridge is a limestone ridge that extends nearly Ridge MCE had a substantial loss of scleractinian coral. 300 km along the southwestern Florida shelf in the east- The percent coral cover on the Main Ridge dropped ern Gulf of Mexico. The southern terminus of Pulley from 12.8% in 2003 to 0.9% by 2012–2015, a 93% loss Ridge supports a mesophotic coral ecosystem (MCE) at of coral. However, recent surveys show the majority of depths of 59–105 m and is the deepest known photosyn- corals to be relatively healthy; only 1.21% of the colo- thetic coral reef off the continental United States. The nies counted (38,368) showed signs consistent with biodiversity consists of 95 species of macroalgae, 92 “white syndromes” disease. The prevalence of disease demosponges, 18 octocorals, 17 scleractinian corals, 9 on Pulley Ridge is relatively low compared to the antipatharian corals, and 86 fishes. Twenty managed Caribbean. The factors causing the decline of the coral fishery species occur at Pulley Ridge including red grou- communities at Pulley Ridge between 2003 and 2012 per, and since 2010 the lionfish population has dramati- are unknown. cally increased. The dominant scleractinian corals are plate like corals of the family Agariciidae (Agaricia spp. -
Correspondence Between Cold Tolerance and Temperate
J. Phycol. 44, 1126–1135 (2008) Ó 2008 Phycological Society of America DOI: 10.1111/j.1529-8817.2008.00567.x CORRESPONDENCE BETWEEN COLD TOLERANCE AND TEMPERATE BIOGEOGRAPHY IN A WESTERN ATLANTIC SYMBIODINIUM (DINOPHYTA) LINEAGE1 Daniel J. Thornhill2 Odum School of Ecology, University of Georgia, Athens, Georgia 30602, USA Department of Biological Sciences, 101 Rouse Life Sciences Building, Auburn University, Auburn, Alabama 36849, USA Dustin W. Kemp Odum School of Ecology, University of Georgia, Athens, Georgia 30602, USA Brigitte U. Bruns Department of Plant Biology, University of Georgia, Athens, Georgia 30602, USA William K. Fitt Odum School of Ecology, University of Georgia, Athens, Georgia 30602, USA and Gregory W. Schmidt Department of Plant Biology, University of Georgia, Athens, Georgia 30602, USA Many corals form obligate symbioses with photo- climates correspond significantly with the photosyn- synthetic dinoflagellates of the genus Symbiodinium thetic cold tolerance of these symbiotic algae. Freudenthal (1962). These symbionts vary geno- Key index words: Astrangia poculata; biogeogra- typically, with their geographical distribution and phy; cold temperature stress; coral; molecular abundance dependent upon host specificity and tol- diversity; Oculina arbuscula; Symbiodinium; zoo- erance to temperature and light variation. Despite xanthellae the importance of these mutualistic relationships, the physiology and ecology of Symbiodinium spp. Abbreviations: ITS2, internal transcribed spacer remain poorly characterized. Here, we report -
USCRTF Handbook on Coral Reef Impacts 2016
U.S. Coral Reef Task Force Handbook on Coral Reef Impacts: Avoidance, Minimization, Compensatory Mitigation, and Restoration Prepared by: U.S. Coral Reef Task Force Coral Injury and Mitigation Working Group December 2016 Handbook on Coral Reef Impacts: Avoidance, Minimization, Compensatory Mitigation, and Restoration EXECUTIVE SUMMARY In response to the National Ocean Council’s Implementation Plan (National Ocean Policy Implementation Plan, 2013) and U.S. Coral Reef Task Force’s (USCRTF) Resolution 16.7, the USCRTF developed the Handbook on Coral Reef Impacts: Avoidance, Minimization, Compensatory Mitigation, and Restoration. The Handbook is a review of the federal authorities, existing policies, and federal agency, state, and territory roles and responsibilities; a compendium of current best practices, science-based methodologies for quantifying ecosystem functions or services; and a general overview of basic protocols available for use when assessing impacts to coral reef ecosystems, and mitigating or restoring for unavoidable impacts to coral reef ecosystems, including the use of appropriate compensatory action to replace the lost functions and services. The Handbook is a compilation of current coral reef mitigation and restoration best management practices. The target audience for this Handbook includes project applicants, proponents, permittees or consultants for projects that may affect coral reefs, or for responsible parties (RP) and their consultants in the event of unplanned impact events. This Handbook is also intended to be -
Photographic Identification Guide to Some Common Marine Invertebrates of Bocas Del Toro, Panama
Caribbean Journal of Science, Vol. 41, No. 3, 638-707, 2005 Copyright 2005 College of Arts and Sciences University of Puerto Rico, Mayagu¨ez Photographic Identification Guide to Some Common Marine Invertebrates of Bocas Del Toro, Panama R. COLLIN1,M.C.DÍAZ2,3,J.NORENBURG3,R.M.ROCHA4,J.A.SÁNCHEZ5,A.SCHULZE6, M. SCHWARTZ3, AND A. VALDÉS7 1Smithsonian Tropical Research Institute, Apartado Postal 0843-03092, Balboa, Ancon, Republic of Panama. 2Museo Marino de Margarita, Boulevard El Paseo, Boca del Rio, Peninsula de Macanao, Nueva Esparta, Venezuela. 3Smithsonian Institution, National Museum of Natural History, Invertebrate Zoology, Washington, DC 20560-0163, USA. 4Universidade Federal do Paraná, Departamento de Zoologia, CP 19020, 81.531-980, Curitiba, Paraná, Brazil. 5Departamento de Ciencias Biológicas, Universidad de los Andes, Carrera 1E No 18A – 10, Bogotá, Colombia. 6Smithsonian Marine Station, 701 Seaway Drive, Fort Pierce, FL 34949, USA. 7Natural History Museum of Los Angeles County, 900 Exposition Boulevard, Los Angeles, California 90007, USA. This identification guide is the result of intensive sampling of shallow-water habitats in Bocas del Toro during 2003 and 2004. The guide is designed to aid in identification of a selection of common macroscopic marine invertebrates in the field and includes 95 species of sponges, 43 corals, 35 gorgonians, 16 nem- erteans, 12 sipunculeans, 19 opisthobranchs, 23 echinoderms, and 32 tunicates. Species are included here on the basis on local abundance and the availability of adequate photographs. Taxonomic coverage of some groups such as tunicates and sponges is greater than 70% of species reported from the area, while coverage for some other groups is significantly less and many microscopic phyla are not included. -
Protected Species Order 2015
Protected Species Order 2015 August 2015 GOVERNMENT OF BERMUDA MINISTRY OF HEALTH, SENIORS AND ENVIRONMENT Department of Conservation Services Protected Species Order 2015 – Protected Species Act 2003 2015 Bermuda and the surrounding reef platform, 1998 Bermuda and the surrounding reef platform, 1998 Protected Species Order 2015 – Protected Species Act 2003 Table of Contents 1.0. Introduction ................................................................................................................................................................................................ 1 Purpose of legislation ...................................................................................................................................................................................... 2 Goal ................................................................................................................................................................................................................. 2 Objectives ........................................................................................................................................................................................................ 2 How species are nominated ............................................................................................................................................................................. 2 Levels of protection for protected species ...................................................................................................................................................... -
Oculine Diffuse / GP2020 Espmarinesprotegees
s e r i a d . i e e s n é u r C f f o i l / d o c L ) e a t i n A i d n l e e u M m culine diffuse I c i O m k o i e N ’ r w d ( è A i (Oculina diffusa ) l e A i u A n c i Classification O o t l N r Autres noms : Madrepora virfinea, o a C p Diffuse ivory bush coral (EN) Phylum Cnidaires ( Cnidaria ) E Classe Anthozoaires ( Anthozoa ) sp èc Ordre Scléractiniaires ( Scleractinia ) e e m gé Famille Oculinidés ( Oculinidae ) arine proté Statut Liste Rouge UICN – mondial : préoccupation mineure ) h r I c k dentification r c i a l e 1 f ( s n e e t Taille : jusqu’à 30 cm de diamètre R u e t i n f i t l Teinte : jaune-brun, pouvant varier suivant la couleur des organismes accrochés, s d l n i calices sombres I ou blanche en absence de zooxanthelles ; W n buissons denses et très branchus d n Aspect : colonies en forme de ; branches a h nombreuses corallites s i courtes et tordues (<1,5 cm de diamètre) portant de F dressées C W n Squelette (ou corallites) : corallites de 3-5 mm de diamètre ; septes longs et F courts alternés ; columelle bien développée et trabéculaire ) n C t s o ycle de vie i l n a a r 2 t u n s t a Longévité : inconnue a C N n i ( o Maturité sexuelle inconnue o m r n n e e l l i Alimentation : composés organiques (photosynthèse des algues symbiotiques) et h u G G zooplanctonique l e n x Reproduction : sexuée et asexuée ; tous les ans entre juillet et septembre (dépend A de la profondeur) Comportement Espèce sessile vivant en colonies en symbiose avec des algues ( zooxanthellae ). -
Milleporidae, Stylasteridae, Scleractinia) in the National Museum of Natural History, Smithsonian Institution
Catalog of the Type Specimens of Stony Corals (Milleporidae, Stylasteridae, Scleractinia) in the National Museum of Natural History, Smithsonian Institution STEPHEN D. CAIRNS W9\ I SMITHSONIAN CONTRIBUTIONS TO ZOOLOGY • NUMBER 514 SERIES PUBLICATIONS OF THE SMITHSONIAN INSTITUTION Emphasis upon publication as a means of "diffusing knowledge" was expressed by the first Secretary of the Smithsonian. In his formal plan for the Institution, Joseph Henry outlined a program that included the following statement: "It is proposed to publish a series of reports, giving an account of the new discoveries in science, and of the changes made from year to year in all branches of knowledge." This theme of basic research has been adhered to through the years by thousands of titles issued in series publications under the Smithsonian imprint, commencing with Smithsonian Contributions to Knowledge in 1848 and continuing with the following active series: Smithsonian Contributions to Anthropology Smithsonian Contributions to Astrophysics Smithsonian Contributions to Botany Smithsonian Contributions to the Earth Sciences Smithsonian Contributions to the Marine Sciences Smithsonian Contributions to Paleobiology Smithsonian Contributions to Zoology Smithsonian Folklife Studies Smithsonian Studies in Air and Space Smithsonian Studies in History and Technology In these series, the Institution publishes small papers and full-scale monographs that report the research and collections of its various museums and bureaux or of professional colleagues in the world of science and scholarship. The publications are distributed by mailing lists to libraries, universities, and similar institutions throughout the world. Papers or monographs submitted for series publication are received by the Smithsonian Institution Press, subject to its own review for format and style, only through departments of the various Smithsonian museums or bureaux, where the manuscripts are given substantive review. -
Dinoflagellates of the Genus Symbiodinium in Corals and Sea Anemones
MARINE ECOLOGY PROGRESS SERIES Vol. 244: 17–26, 2002 Published November 29 Mar Ecol Prog Ser Molecular diversity of symbiotic algae at the latitudinal margins of their distribution: dinoflagellates of the genus Symbiodinium in corals and sea anemones A. M. Savage1, M. S. Goodson1, S. Visram1, H. Trapido-Rosenthal2, J. Wiedenmann3, A. E. Douglas1,* 1Department of Biology, University of York, PO Box 373, York YO10 5YW, United Kingdom 2Bermuda Biological Station for Research, Ferry Reach, Bermuda GE01 3Department of General Zoology and Endocrinology, University of Ulm, Albert Einstein Allee 11, 89069 Ulm, Germany ABSTRACT: To investigate the molecular diversity of symbiotic algae at the latitudinal limits of their distribution, the ribosomal RNA gene sequences (rDNA) of the dinoflagellate Symbiodinium in ben- thic Cnidaria (corals, sea anemones etc.) on Bermuda (32°N) and in the Mediterranean and NE Atlantic (35 to 53°N) were analysed. The algae in Bermudian Cnidaria were identified as Symbio- dinium of Phylotypes A, B and C, as previously described for benthic Cnidaria in the Caribbean (12 to 27°N). The algae in every sample of sea anemones (Anemonia spp. and Cereus pedunculatus) in the NE Atlantic and Mediterranean were a previously undescribed group within Phylotype A, possibly endemic to this high latitude region. KEY WORDS: Symbiosis · Symbiodinium · Zooxanthellae · Molecular diversity · Marginal populations Resale or republication not permitted without written consent of the publisher INTRODUCTION been reported in the free-living condition and those that have are invariably close to symbioses (Carlos et Reef-building scleractinian corals and most other al. 1999), suggesting that free-living populations are benthic Cnidaria (e.g. -
Effects of Suspended Sediment and Burial Upon Survival and Growth of Eastern Gulf of Mexico Corals
Effects of Suspended Sediment and Burial Upon Survival and Growth of Eastern Gulf of Mexico Corals Stanley A. Rice, Ph.D. Principal Investigator Submitted to: Camp Dresser & McKee Inc. 7630 Little River Turnpike Suite 500 Annandale, Virginia 22003 Submitted by: Mote Marine Laboratory 1600 City Island Park Sarasota, Florida 33577 (813) 388-4441 September 30, 1984 Suggested reference Rice SA. 1984. Effects of suspended sediment and burial upon survival and growth of Eastern Gulf of Mexico Corals. Camp Dresser & McKee, Inc.. Mote Marine Laboratory Technical Report no 87. 58 p. Available from: Mote Marine Laboratory Library. ACKNOWLEDGEMENTS This project could not have been undertaken without the support of numerous willing contributors. Field measurements and sampling were aided by Mr. Cole M. Neill, Mr. Mike Bacon and Dr. Carl A. Luer. The efforts of Capt. Peter Hull and Capt. Larry Borden toward smooth and reliable vessel operation are greatly appreciated. The invaluable assistance of Mr. John Kucklick in field and laboratory procedures is especially appreciated. Logistic support was provided by Mr. James K. Culter, Mr. Al Franklin and Ms. Denise Latulippe who are thanked for their assistance. SUMMARY Effects of Suspended Sediment and Burial Upon Survival and Growth of Eastern Gulf of Mexico Corals Laboratory experiments were undertaken to quantify the effects of high suspended sediment loads and total burial upon selected species of hard corals and sponges from the Gulf of Mexico. Suspended sediment studies lasted for 10 days each with survival and growth rates measured in control and experimental treatments. The coral species tested in these experiments included: Phyllangia americana, Scolymia lacera, Cladocora arbuscula, Manicina areolata, Isophyllia sinuosa, Solenastrea hyades, Stephanocoenia michelinii, and Siderastrea radians. -
Oculina Experimental Closed Area Evaluation Plan
FINAL Evaluation Plan For the Oculina Experimental Closed Area March 22, 2005 South Atlantic Fishery Management Council 1 Southpark Circle, Suite 306, Charleston, South Carolina 29407-4699 (843) 571-4366 / FAX (843) 769-4520 Toll Free: 866-SAFMC-10 This is a publication of the South Atlantic Fishery Management Council pursuant to National Oceanic and Atmospheric Administration Award No. NA05NMF4410004 2 Summary In April 2004, regulations were implemented through Amendment 13A to the South Atlantic Snapper Grouper Fishery Management Plan that extended the fishing restrictions for the designated 92-square mile Oculina Experimental Closed Area for an indefinite period. The amendment was developed by the South Atlantic Fishery Management Council to address the 10-year sunset provision for the closure of the area to snapper/grouper fishing. Located off the coast of Ft. Pierce, Florida, the area is part of the larger Oculina Habitat Area of Particular Concern (HAPC) designed to protect the Oculina coral found there. In addition to extending the closure, the amendment requires that the size and configuration of the Experimental Closed Area be reviewed within three years of the implementation date of Amendment 13A and that a 10-year re-evaluation be conducted for the area. The Council also stipulated that an Evaluation Plan be developed to address needed monitoring and research, outreach, and enforcement efforts within one year of implementation of the Amendment. This Evaluation Plan contains only summary background information on the science and management relating to the Oculina Bank HAPC and Closed Area. For more information please refer to Amendment 13A to the Snapper Grouper Fishery Management Plan.