Oculina Experimental Closed Area Evaluation Plan
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Unfolding the Secrets of Coral–Algal Symbiosis
The ISME Journal (2015) 9, 844–856 & 2015 International Society for Microbial Ecology All rights reserved 1751-7362/15 www.nature.com/ismej ORIGINAL ARTICLE Unfolding the secrets of coral–algal symbiosis Nedeljka Rosic1, Edmund Yew Siang Ling2, Chon-Kit Kenneth Chan3, Hong Ching Lee4, Paulina Kaniewska1,5,DavidEdwards3,6,7,SophieDove1,8 and Ove Hoegh-Guldberg1,8,9 1School of Biological Sciences, The University of Queensland, St Lucia, Queensland, Australia; 2University of Queensland Centre for Clinical Research, The University of Queensland, Herston, Queensland, Australia; 3School of Agriculture and Food Sciences, The University of Queensland, St Lucia, Queensland, Australia; 4The Kinghorn Cancer Centre, Garvan Institute of Medical Research, Sydney, New South Wales, Australia; 5Australian Institute of Marine Science, Townsville, Queensland, Australia; 6School of Plant Biology, University of Western Australia, Perth, Western Australia, Australia; 7Australian Centre for Plant Functional Genomics, The University of Queensland, St Lucia, Queensland, Australia; 8ARC Centre of Excellence for Coral Reef Studies, The University of Queensland, St Lucia, Queensland, Australia and 9Global Change Institute and ARC Centre of Excellence for Coral Reef Studies, The University of Queensland, St Lucia, Queensland, Australia Dinoflagellates from the genus Symbiodinium form a mutualistic symbiotic relationship with reef- building corals. Here we applied massively parallel Illumina sequencing to assess genetic similarity and diversity among four phylogenetically diverse dinoflagellate clades (A, B, C and D) that are commonly associated with corals. We obtained more than 30 000 predicted genes for each Symbiodinium clade, with a majority of the aligned transcripts corresponding to sequence data sets of symbiotic dinoflagellates and o2% of sequences having bacterial or other foreign origin. -
Checklist of Fish and Invertebrates Listed in the CITES Appendices
JOINTS NATURE \=^ CONSERVATION COMMITTEE Checklist of fish and mvertebrates Usted in the CITES appendices JNCC REPORT (SSN0963-«OStl JOINT NATURE CONSERVATION COMMITTEE Report distribution Report Number: No. 238 Contract Number/JNCC project number: F7 1-12-332 Date received: 9 June 1995 Report tide: Checklist of fish and invertebrates listed in the CITES appendices Contract tide: Revised Checklists of CITES species database Contractor: World Conservation Monitoring Centre 219 Huntingdon Road, Cambridge, CB3 ODL Comments: A further fish and invertebrate edition in the Checklist series begun by NCC in 1979, revised and brought up to date with current CITES listings Restrictions: Distribution: JNCC report collection 2 copies Nature Conservancy Council for England, HQ, Library 1 copy Scottish Natural Heritage, HQ, Library 1 copy Countryside Council for Wales, HQ, Library 1 copy A T Smail, Copyright Libraries Agent, 100 Euston Road, London, NWl 2HQ 5 copies British Library, Legal Deposit Office, Boston Spa, Wetherby, West Yorkshire, LS23 7BQ 1 copy Chadwick-Healey Ltd, Cambridge Place, Cambridge, CB2 INR 1 copy BIOSIS UK, Garforth House, 54 Michlegate, York, YOl ILF 1 copy CITES Management and Scientific Authorities of EC Member States total 30 copies CITES Authorities, UK Dependencies total 13 copies CITES Secretariat 5 copies CITES Animals Committee chairman 1 copy European Commission DG Xl/D/2 1 copy World Conservation Monitoring Centre 20 copies TRAFFIC International 5 copies Animal Quarantine Station, Heathrow 1 copy Department of the Environment (GWD) 5 copies Foreign & Commonwealth Office (ESED) 1 copy HM Customs & Excise 3 copies M Bradley Taylor (ACPO) 1 copy ^\(\\ Joint Nature Conservation Committee Report No. -
Habitat-Forming Deep-Sea Corals in the Northeast Pacific Ocean
Habitat-forming deep-sea corals in the Northeast Pacific Ocean Peter Etnoyer1, Lance E. Morgan2 1 Aquanautix Consulting, 3777 Griffith View Drive, Los Angeles, CA 90039, USA ([email protected]) 2 Marine Conservation Biology Institute, 4878 Warm Springs Rd., Glen Ellen, CA 95442, USA Abstract. We define habitat-forming deep-sea corals as those families of octocorals, hexacorals, and stylasterids with species that live deeper than 200 m, with a majority of species exhibiting complex branching morphology and a sufficient size to provide substrata or refugia to associated species. We present 2,649 records (name, geoposition, depth, and data quality) from eleven institutions on eight habitat- forming deep-sea coral families, including octocorals in the families Coralliidae, Isididae, Paragorgiidae and Primnoidae, hexacorals in the families Antipathidae, Oculinidae and Caryophylliidae, and stylasterids in the family Stylasteridae. The data are ranked according to record quality. We compare family range and distribution as predicted by historical records to the family extent as informed by recent collections aboard the National Oceanic of Atmospheric Administration (NOAA) Office of Ocean Exploration 2002 Gulf of Alaska Seamount Expedition (GOASEX). We present a map of one of these families, the Primnoidae. We find that these habitat-forming families are widespread throughout the Northeast Pacific, save Caryophylliidae (Lophelia sp.) and Oculinidae (Madrepora sp.), which are limited in occurrence. Most coral records fall on the continental shelves, in Alaska, or Hawaii, likely reflecting research effort. The vertical range of these families, based on large samples (N >200), is impressive. Four families have maximum-recorded depths deeper than 1500 m, and minimum depths shallower than 40 m. -
Pseudosiderastrea Formosa Sp. Nov. (Cnidaria: Anthozoa: Scleractinia)
Zoological Studies 51(1): 93-98 (2012) Pseudosiderastrea formosa sp. nov. (Cnidaria: Anthozoa: Scleractinia) a New Coral Species Endemic to Taiwan Michel Pichon1, Yao-Yang Chuang2,3, and Chaolun Allen Chen2,3,4,* 1Museum of Tropical Queensland, 70-102 Flinders Street, Townsville 4810, Australia 2Biodiversity Research Center, Academia Sinica, Nangang, Taipei 115, Taiwan 3Institute of Oceanography, National Taiwan Univ., Taipei 106, Taiwan 4Institute of Life Science, National Taitung Univ., Taitung 904, Taiwan (Accepted September 1, 2011) Michel Pichon, Yao-Yang Chuang, and Chaolun Allen Chen (2012) Pseudosiderastrea formosa sp. nov. (Cnidaria: Anthozoa: Scleractinia) a new coral species endemic to Taiwan. Zoological Studies 51(1): 93-98. Pseudosiderastrea formosa sp. nov. is a new siderastreid scleractinian coral collected in several localities in Taiwan. It lives on rocky substrates where it forms encrusting colonies. Results of morphological observations and molecular genetic analyses are presented. The new species is described and compared to P. tayamai and Siderastrea savignyana, and its morphological and phylogenic affinities are discussed. http://zoolstud.sinica.edu.tw/Journals/51.1/93.pdf Key words: Pseudosiderastrea formosa sp. nov., New species, Scleractinia, Siderastreid, Western Pacific Ocean. A siderastreid scleractinian coral was Pseudosiderastrea, described as P. formosa sp. collected from several localities around Taiwan nov. and nearby islands, where it is relatively rare. The specimens present some morphological similarities with Pseudosiderastrea tayamai Yabe MATERIAL AND METHODS and Sugiyama, 1935, the only species hitherto known from that genus, and with Siderastrea Specimens were collected by scuba diving at savignyana Milne Edwards and Haime, 1849, Wanlitung (21°59'48"N, 120°42'10"E) and the outlet which is the sole representative in the Indian of the 3rd nuclear power plant (21°55'51.38"N, Ocean of the genus Siderastrea de Blainville, 120°44'46.82"E) on the southeastern coast 1830. -
The Invasive Coral Oculina Patagonica Has Not Been Recently Introduced to the Mediterranean from the Western Atlantic Karine Posbic Leydet* and Michael E Hellberg
Leydet and Hellberg BMC Evolutionary Biology (2015) 15:79 DOI 10.1186/s12862-015-0356-7 RESEARCH ARTICLE Open Access The invasive coral Oculina patagonica has not been recently introduced to the Mediterranean from the western Atlantic Karine Posbic Leydet* and Michael E Hellberg Abstract Background: Effective policies, management, and scientific research programs depend on the correct identification of invasive species as being either native or introduced. However, many species continue to be misidentified. Oculina patagonica, first recorded in the Mediterranean Sea in 1966, is believed to have been introduced in anthropogenic times and expanding in a west to east direction. However, its present identification and status as a recently introduced species remain to be explored. In this study, we used multi-locus genetic data to test whether O. patagonica in the Mediterranean has been recently introduced from the western North Atlantic. Results: We found no genetic or historical demographic evidence to support a recent introduction of O. patagonica from the western North Atlantic or an expansion across the Mediterranean. Instead, Mediterranean and Atlantic populations are genetically distinct and appear to have begun diverging about 5 Mya. We also found evidence of a fossil record of Oculina spp. existing in the eastern North Atlantic millions of years before the present. Conclusions: Our results suggest that Mediterranean populations of O. patagonica have long been isolated from the western Atlantic, either in undetectable numbers or overlooked and undersampled sites and habitats, and have only recently been expanding to invasive levels as a result of environmental changes. Accurate identification of species’ invasive statuses will enable more effective research programs aimed at better understanding the mechanisms promoting the invasive nature of species, which can then lead to the implementation of efficient management plans. -
Volume 2. Animals
AC20 Doc. 8.5 Annex (English only/Seulement en anglais/Únicamente en inglés) REVIEW OF SIGNIFICANT TRADE ANALYSIS OF TRADE TRENDS WITH NOTES ON THE CONSERVATION STATUS OF SELECTED SPECIES Volume 2. Animals Prepared for the CITES Animals Committee, CITES Secretariat by the United Nations Environment Programme World Conservation Monitoring Centre JANUARY 2004 AC20 Doc. 8.5 – p. 3 Prepared and produced by: UNEP World Conservation Monitoring Centre, Cambridge, UK UNEP WORLD CONSERVATION MONITORING CENTRE (UNEP-WCMC) www.unep-wcmc.org The UNEP World Conservation Monitoring Centre is the biodiversity assessment and policy implementation arm of the United Nations Environment Programme, the world’s foremost intergovernmental environmental organisation. UNEP-WCMC aims to help decision-makers recognise the value of biodiversity to people everywhere, and to apply this knowledge to all that they do. The Centre’s challenge is to transform complex data into policy-relevant information, to build tools and systems for analysis and integration, and to support the needs of nations and the international community as they engage in joint programmes of action. UNEP-WCMC provides objective, scientifically rigorous products and services that include ecosystem assessments, support for implementation of environmental agreements, regional and global biodiversity information, research on threats and impacts, and development of future scenarios for the living world. Prepared for: The CITES Secretariat, Geneva A contribution to UNEP - The United Nations Environment Programme Printed by: UNEP World Conservation Monitoring Centre 219 Huntingdon Road, Cambridge CB3 0DL, UK © Copyright: UNEP World Conservation Monitoring Centre/CITES Secretariat The contents of this report do not necessarily reflect the views or policies of UNEP or contributory organisations. -
Pulley Ridge, Gulf of Mexico, USA 4 John K
Pulley Ridge, Gulf of Mexico, USA 4 John K. Reed, Stephanie Farrington, Andy David, Stacey Harter, Shirley A. Pomponi, M. Cristina Diaz, Joshua D. Voss, Keith D. Spring, Albert C. Hine, Villy H. Kourafalou, Ryan H. Smith, Ana C. Vaz, Claire B. Paris, and M. Dennis Hanisak Abstract sponges had 1.2% cover. In the past 10 years, the Pulley Pulley Ridge is a limestone ridge that extends nearly Ridge MCE had a substantial loss of scleractinian coral. 300 km along the southwestern Florida shelf in the east- The percent coral cover on the Main Ridge dropped ern Gulf of Mexico. The southern terminus of Pulley from 12.8% in 2003 to 0.9% by 2012–2015, a 93% loss Ridge supports a mesophotic coral ecosystem (MCE) at of coral. However, recent surveys show the majority of depths of 59–105 m and is the deepest known photosyn- corals to be relatively healthy; only 1.21% of the colo- thetic coral reef off the continental United States. The nies counted (38,368) showed signs consistent with biodiversity consists of 95 species of macroalgae, 92 “white syndromes” disease. The prevalence of disease demosponges, 18 octocorals, 17 scleractinian corals, 9 on Pulley Ridge is relatively low compared to the antipatharian corals, and 86 fishes. Twenty managed Caribbean. The factors causing the decline of the coral fishery species occur at Pulley Ridge including red grou- communities at Pulley Ridge between 2003 and 2012 per, and since 2010 the lionfish population has dramati- are unknown. cally increased. The dominant scleractinian corals are plate like corals of the family Agariciidae (Agaricia spp. -
Correspondence Between Cold Tolerance and Temperate
J. Phycol. 44, 1126–1135 (2008) Ó 2008 Phycological Society of America DOI: 10.1111/j.1529-8817.2008.00567.x CORRESPONDENCE BETWEEN COLD TOLERANCE AND TEMPERATE BIOGEOGRAPHY IN A WESTERN ATLANTIC SYMBIODINIUM (DINOPHYTA) LINEAGE1 Daniel J. Thornhill2 Odum School of Ecology, University of Georgia, Athens, Georgia 30602, USA Department of Biological Sciences, 101 Rouse Life Sciences Building, Auburn University, Auburn, Alabama 36849, USA Dustin W. Kemp Odum School of Ecology, University of Georgia, Athens, Georgia 30602, USA Brigitte U. Bruns Department of Plant Biology, University of Georgia, Athens, Georgia 30602, USA William K. Fitt Odum School of Ecology, University of Georgia, Athens, Georgia 30602, USA and Gregory W. Schmidt Department of Plant Biology, University of Georgia, Athens, Georgia 30602, USA Many corals form obligate symbioses with photo- climates correspond significantly with the photosyn- synthetic dinoflagellates of the genus Symbiodinium thetic cold tolerance of these symbiotic algae. Freudenthal (1962). These symbionts vary geno- Key index words: Astrangia poculata; biogeogra- typically, with their geographical distribution and phy; cold temperature stress; coral; molecular abundance dependent upon host specificity and tol- diversity; Oculina arbuscula; Symbiodinium; zoo- erance to temperature and light variation. Despite xanthellae the importance of these mutualistic relationships, the physiology and ecology of Symbiodinium spp. Abbreviations: ITS2, internal transcribed spacer remain poorly characterized. Here, we report -
Scleractinia Fauna of Taiwan I
Scleractinia Fauna of Taiwan I. The Complex Group 台灣石珊瑚誌 I. 複雜類群 Chang-feng Dai and Sharon Horng Institute of Oceanography, National Taiwan University Published by National Taiwan University, No.1, Sec. 4, Roosevelt Rd., Taipei, Taiwan Table of Contents Scleractinia Fauna of Taiwan ................................................................................................1 General Introduction ........................................................................................................1 Historical Review .............................................................................................................1 Basics for Coral Taxonomy ..............................................................................................4 Taxonomic Framework and Phylogeny ........................................................................... 9 Family Acroporidae ............................................................................................................ 15 Montipora ...................................................................................................................... 17 Acropora ........................................................................................................................ 47 Anacropora .................................................................................................................... 95 Isopora ...........................................................................................................................96 Astreopora ......................................................................................................................99 -
The Earliest Diverging Extant Scleractinian Corals Recovered by Mitochondrial Genomes Isabela G
www.nature.com/scientificreports OPEN The earliest diverging extant scleractinian corals recovered by mitochondrial genomes Isabela G. L. Seiblitz1,2*, Kátia C. C. Capel2, Jarosław Stolarski3, Zheng Bin Randolph Quek4, Danwei Huang4,5 & Marcelo V. Kitahara1,2 Evolutionary reconstructions of scleractinian corals have a discrepant proportion of zooxanthellate reef-building species in relation to their azooxanthellate deep-sea counterparts. In particular, the earliest diverging “Basal” lineage remains poorly studied compared to “Robust” and “Complex” corals. The lack of data from corals other than reef-building species impairs a broader understanding of scleractinian evolution. Here, based on complete mitogenomes, the early onset of azooxanthellate corals is explored focusing on one of the most morphologically distinct families, Micrabaciidae. Sequenced on both Illumina and Sanger platforms, mitogenomes of four micrabaciids range from 19,048 to 19,542 bp and have gene content and order similar to the majority of scleractinians. Phylogenies containing all mitochondrial genes confrm the monophyly of Micrabaciidae as a sister group to the rest of Scleractinia. This topology not only corroborates the hypothesis of a solitary and azooxanthellate ancestor for the order, but also agrees with the unique skeletal microstructure previously found in the family. Moreover, the early-diverging position of micrabaciids followed by gardineriids reinforces the previously observed macromorphological similarities between micrabaciids and Corallimorpharia as -
AC27 Doc. 12.5
Original language: English AC27 Doc. 12.5 CONVENTION ON INTERNATIONAL TRADE IN ENDANGERED SPECIES OF WILD FAUNA AND FLORA ____________ Twenty-seventh meeting of the Animals Committee Veracruz (Mexico), 28 April – 3 May 2014 Interpretation and implementation of the Convention Review of Significant Trade in specimens of Appendix-II species [Resolution Conf. 12.8 (Rev. CoP13)] SELECTION OF SPECIES FOR TRADE REVIEWS FOLLOWING COP16 1. This document has been prepared by the Secretariat. 2. In Resolution Conf. 12.8 (Rev. CoP13) on Review of Significant Trade in specimens of Appendix-II species, the Conference of the Parties: DIRECTS the Animals and Plants Committees, in cooperation with the Secretariat and experts, and in consultation with range States, to review the biological, trade and other relevant information on Appendix-II species subject to significant levels of trade, to identify problems and solutions concerning the implementation of Article IV, paragraphs 2 (a), 3 and 6 (a)... 3. In accordance with paragraph a) of that Resolution under the section Regarding conduct of the Review of Significant Trade, the Secretariat requested UNEP-WCMC to produce a summary from the CITES Trade Database of annual report statistics showing the recorded net level of exports for Appendix-II species over the five most recent years. Its report is attached as Annex 1 (English only) to the present document. The raw data used to prepare this summary are available in document AC27 Inf. 2. 4. Paragraph b) of the same section directs the Animals Committee, on the basis of recorded trade levels and information available to it, the Secretariat, Parties or other relevant experts, to select species of priority concern for review (whether or not such species have been the subject of a previous review). -
USCRTF Handbook on Coral Reef Impacts 2016
U.S. Coral Reef Task Force Handbook on Coral Reef Impacts: Avoidance, Minimization, Compensatory Mitigation, and Restoration Prepared by: U.S. Coral Reef Task Force Coral Injury and Mitigation Working Group December 2016 Handbook on Coral Reef Impacts: Avoidance, Minimization, Compensatory Mitigation, and Restoration EXECUTIVE SUMMARY In response to the National Ocean Council’s Implementation Plan (National Ocean Policy Implementation Plan, 2013) and U.S. Coral Reef Task Force’s (USCRTF) Resolution 16.7, the USCRTF developed the Handbook on Coral Reef Impacts: Avoidance, Minimization, Compensatory Mitigation, and Restoration. The Handbook is a review of the federal authorities, existing policies, and federal agency, state, and territory roles and responsibilities; a compendium of current best practices, science-based methodologies for quantifying ecosystem functions or services; and a general overview of basic protocols available for use when assessing impacts to coral reef ecosystems, and mitigating or restoring for unavoidable impacts to coral reef ecosystems, including the use of appropriate compensatory action to replace the lost functions and services. The Handbook is a compilation of current coral reef mitigation and restoration best management practices. The target audience for this Handbook includes project applicants, proponents, permittees or consultants for projects that may affect coral reefs, or for responsible parties (RP) and their consultants in the event of unplanned impact events. This Handbook is also intended to be