Flavonoid, Phenylethanoid and Iridoid Glycosides from Globularia Aphyllanthes
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Phd Federica Gilardelli A5
Vegetation dynamics and restoration trials in limestone quarries: the Botticino case study (Brescia, Italy) Federica Gilardelli UNIVERSITÀ DEGLI STUDI DI MILANO – BICOCCA Facoltà di Scienze Matematiche, Fisiche e Naturali Vegetation dynamics and restoration trials in limestone quarries: the Botticino case study (Brescia, Italy) Federica Gilardelli PhD thesis in Environmental Science XXV cycle Tutor: Cotutors: Prof. Sandra Citterio Prof. Sergio Sgorbati Dr. Rodolfo Gentili Dr. Stefano Armiraglio Collaborations: Dr. Ing. Sergio Savoldi Dr. Pierangelo Barossi February 2013 To all the quarrymen and their families. A tutti i cavatori e le loro famiglie. Background. All over the world, the naturalistic restoration of abandoned quarry areas represents a real challenge because of the very adverse initial site conditions for plant species colonization. In order to identify the best restoration practices, the present thesis considered, as a case study, the “Botticino extractive basin” (Lombardy, Italy), that is today the second greatest Italian extractive basin and it is famous worldwide for the limestone extraction. In particular, the thesis proposes a multidisciplinary approach based on the study of the local vegetation dynamics, laboratory tests, plant selection for restoration and field experiments to test different restoration techniques. Methods. Spontaneous vegetation dynamics over the whole extractive basin was studied by an ecological approach through 108 plots, that were carried out on surfaces whose “disused time” from quarry abandonment was known; data were analysed by cluster analysis and Canonical Correspondence Analysis (CCA) and compared to the available data on grassland and woodlands related to the study area. We identified successional phases according to the trend of the most common species whose cover significantly increases or decreases with time. -
1 Contrasting Habitat and Landscape Effects on the Fitness of a Long-Lived Grassland Plant Under 1 Forest Encroachment
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Diposit Digital de Documents de la UAB 1 Contrasting habitat and landscape effects on the fitness of a long-lived grassland plant under 2 forest encroachment: do they provide evidence for extinction debt? 3 4 Guillem Bagaria1,2*, Ferran Rodà1,2, Maria Clotet1, Silvia Míguez1 and Joan Pino1,2 5 6 1CREAF, Cerdanyola del Vallès 08193, Spain; 2Univ Autònoma Barcelona, Cerdanyola del Vallès 7 08193, Spain. 8 9 *Correspondence author. CREAF, Cerdanyola del Vallès 08193, Spain. 10 E-mail: [email protected] 11 Phone: +34 935814851 12 FAX: +34 93 5814151 13 14 Running title: Plant fitness and extinction debt 15 This is the accepted version of the following article: Bagaria, G. , et al.“Contrasting habitat and landscape effects on the fitness of a long-lived grassland plant under forest encroachment: do they provide evidence for extinction debt?” in Journal of ecology (Ed. Wiley), vol. 106, issue 1 (Jan. 2018), p. 278-288, which has been published in final form at DOI 10.1111/1365-2745.12860. 1 16 Summary 17 1. Habitat loss, fragmentation and transformation threaten the persistence of many species 18 worldwide. Population and individual fitness are often compromised in small, degraded and isolated 19 habitats, but extinction can be a slow process and extinction debts are common. 20 2. Long-lived species are prone to persist as remnant populations in low quality habitats for a long 21 time, but the population and individual-level mechanisms of extinction debt remain poorly explored 22 so far. -
Reproductive Phenology As a Dimension of the Phenotypic Space in 139 Plant Species from the Mediterranean Jules Segrestin, Marie-Laure Navas, Eric Garnier
Reproductive phenology as a dimension of the phenotypic space in 139 plant species from the Mediterranean Jules Segrestin, Marie-laure Navas, Eric Garnier To cite this version: Jules Segrestin, Marie-laure Navas, Eric Garnier. Reproductive phenology as a dimension of the phenotypic space in 139 plant species from the Mediterranean. New Phytologist, Wiley, 2020, 225 (2), pp.740-753. 10.1111/nph.16165. hal-02350041 HAL Id: hal-02350041 https://hal.archives-ouvertes.fr/hal-02350041 Submitted on 4 Jan 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Reproductive phenology as a dimension of the phenotypic space in 139 plant species from the Mediterranean Journal: New Phytologist ManuscriptFor ID NPH-MS-2019-29531 Peer Review Manuscript Type: MS - Regular Manuscript Date Accepted 24-August-2019 Complete List of Authors: Segrestin, Jules; CEFE, Ecologie comparative des organismes, des communautés et des écosystèmes Navas, Marie-Laure; Montpellier SupAgro, UMR Centre d'Ecologie Fonctionnelle et Evolutive, UMR 5175 Garnier, Eric; CEFE, Ecologie comparative des organismes, des communautés et des écosystèmes Reproductive phenology, Flowering, Seed maturation, Phenotypic space, Key Words: Comparative ecology, manuscriptPlant traits Accepted 1 Reproductive phenology as a dimension of the phenotypic space in 139 plant species 2 from the Mediterranean 3 Jules Segrestin* a, Marie-Laure Navas b & Eric Garnier a 4 5 a CEFE, CNRS, Univ Montpellier, Univ Paul Valéry Montpellier 3, EPHE, IRD, route de Mende, 6 34293 Montpellier Cedex 5, France 7 b CEFE, Montpellier SupAgro, CNRS, Univ. -
GENOME EVOLUTION in MONOCOTS a Dissertation
GENOME EVOLUTION IN MONOCOTS A Dissertation Presented to The Faculty of the Graduate School At the University of Missouri In Partial Fulfillment Of the Requirements for the Degree Doctor of Philosophy By Kate L. Hertweck Dr. J. Chris Pires, Dissertation Advisor JULY 2011 The undersigned, appointed by the dean of the Graduate School, have examined the dissertation entitled GENOME EVOLUTION IN MONOCOTS Presented by Kate L. Hertweck A candidate for the degree of Doctor of Philosophy And hereby certify that, in their opinion, it is worthy of acceptance. Dr. J. Chris Pires Dr. Lori Eggert Dr. Candace Galen Dr. Rose‐Marie Muzika ACKNOWLEDGEMENTS I am indebted to many people for their assistance during the course of my graduate education. I would not have derived such a keen understanding of the learning process without the tutelage of Dr. Sandi Abell. Members of the Pires lab provided prolific support in improving lab techniques, computational analysis, greenhouse maintenance, and writing support. Team Monocot, including Dr. Mike Kinney, Dr. Roxi Steele, and Erica Wheeler were particularly helpful, but other lab members working on Brassicaceae (Dr. Zhiyong Xiong, Dr. Maqsood Rehman, Pat Edger, Tatiana Arias, Dustin Mayfield) all provided vital support as well. I am also grateful for the support of a high school student, Cady Anderson, and an undergraduate, Tori Docktor, for their assistance in laboratory procedures. Many people, scientist and otherwise, helped with field collections: Dr. Travis Columbus, Hester Bell, Doug and Judy McGoon, Julie Ketner, Katy Klymus, and William Alexander. Many thanks to Barb Sonderman for taking care of my greenhouse collection of many odd plants brought back from the field. -
TELOPEA Publication Date: 13 October 1983 Til
Volume 2(4): 425–452 TELOPEA Publication Date: 13 October 1983 Til. Ro)'al BOTANIC GARDENS dx.doi.org/10.7751/telopea19834408 Journal of Plant Systematics 6 DOPII(liPi Tmst plantnet.rbgsyd.nsw.gov.au/Telopea • escholarship.usyd.edu.au/journals/index.php/TEL· ISSN 0312-9764 (Print) • ISSN 2200-4025 (Online) Telopea 2(4): 425-452, Fig. 1 (1983) 425 CURRENT ANATOMICAL RESEARCH IN LILIACEAE, AMARYLLIDACEAE AND IRIDACEAE* D.F. CUTLER AND MARY GREGORY (Accepted for publication 20.9.1982) ABSTRACT Cutler, D.F. and Gregory, Mary (Jodrell(Jodrel/ Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey, England) 1983. Current anatomical research in Liliaceae, Amaryllidaceae and Iridaceae. Telopea 2(4): 425-452, Fig.1-An annotated bibliography is presented covering literature over the period 1968 to date. Recent research is described and areas of future work are discussed. INTRODUCTION In this article, the literature for the past twelve or so years is recorded on the anatomy of Liliaceae, AmarylIidaceae and Iridaceae and the smaller, related families, Alliaceae, Haemodoraceae, Hypoxidaceae, Ruscaceae, Smilacaceae and Trilliaceae. Subjects covered range from embryology, vegetative and floral anatomy to seed anatomy. A format is used in which references are arranged alphabetically, numbered and annotated, so that the reader can rapidly obtain an idea of the range and contents of papers on subjects of particular interest to him. The main research trends have been identified, classified, and check lists compiled for the major headings. Current systematic anatomy on the 'Anatomy of the Monocotyledons' series is reported. Comment is made on areas of research which might prove to be of future significance. -
Networks in a Large-Scale Phylogenetic Analysis: Reconstructing Evolutionary History of Asparagales (Lilianae) Based on Four Plastid Genes
Networks in a Large-Scale Phylogenetic Analysis: Reconstructing Evolutionary History of Asparagales (Lilianae) Based on Four Plastid Genes Shichao Chen1., Dong-Kap Kim2., Mark W. Chase3, Joo-Hwan Kim4* 1 College of Life Science and Technology, Tongji University, Shanghai, China, 2 Division of Forest Resource Conservation, Korea National Arboretum, Pocheon, Gyeonggi- do, Korea, 3 Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, United Kingdom, 4 Department of Life Science, Gachon University, Seongnam, Gyeonggi-do, Korea Abstract Phylogenetic analysis aims to produce a bifurcating tree, which disregards conflicting signals and displays only those that are present in a large proportion of the data. However, any character (or tree) conflict in a dataset allows the exploration of support for various evolutionary hypotheses. Although data-display network approaches exist, biologists cannot easily and routinely use them to compute rooted phylogenetic networks on real datasets containing hundreds of taxa. Here, we constructed an original neighbour-net for a large dataset of Asparagales to highlight the aspects of the resulting network that will be important for interpreting phylogeny. The analyses were largely conducted with new data collected for the same loci as in previous studies, but from different species accessions and greater sampling in many cases than in published analyses. The network tree summarised the majority data pattern in the characters of plastid sequences before tree building, which largely confirmed the currently recognised phylogenetic relationships. Most conflicting signals are at the base of each group along the Asparagales backbone, which helps us to establish the expectancy and advance our understanding of some difficult taxa relationships and their phylogeny. -
Rm Rock Cjarden Rw
American M RocD ki Cjarder J n rrmW Society u Bulletin u FOURTH OF JULY ON ISLE ROYALE—Iza Goroff and Deon. Prell 53 AN ALPINE IS AN ALPINE—Jo/m Kelly 58 STUDY WEEKEND—EAST—Milton S. Mulloy 61 STUDY WEEKEND—WEST—Alberta Drew 62 THE GREAT BASIN PHENOMENON, III—Roy Davidson 64 LEWISIAS—FIRST AID—Mrs. G. W. Duseh 72 BEWARE OF PLANT IDENTIFICATION FROM COLOR PHOTOGRAPHS—Edgar T. Wherry 75 IN THE CAUCASUS MOUNTAINS—Josef Halda 78 OMNIUM-GATHERUM 85 OBITUARY 87 INDEX FOR 1974, Vol. 32 90 Vol. 33 April, 1975 No. 2 DIRECTORATE BULLETIN Editor Emeritus DR. EDGAR T. WHERRY, 41 W. Aliens Lane, Philadelphia, Pa. 19119 Editor ALBERT M. SUTTON 9608 26th Ave. N.W., Seattle, Washington 98117 AMERICAN ROCK GARDEN SOCIETY President Emeritus HAROLD EPSTEIN, 5 Forest Court, Larchmont, New York President HARRY W. BUTLER, 2521 Penewit Road. R. R. #1, Spring Valley, Ohio 45370 Vice-President RICHARD W. REDFD2LD, P.O. Box 26, Closter, N.J. 07624 Secretary M. S. MULLOY, 90 Pierpont Road, Waterbury, Conn. 06705 Treasurer ANTON J. LATAWIC, 19 Ash St., Manchester, Conn. 06040 Directors Term Expires 1975 Miss Viki Ferreniea Henry R. Fuller Arthur W. Kruckeberg Term Expires 197<P* ^ " ^ Mrs. D. S. Croxton Carl A. Gehenio Roy Davidson Term Expires<1977 " 5 Margaret Williams Donald Peach Robert Woodward 'T^ fcyv/ Visile-- l6c Director of Seed Exchange DR. EARL E. EWERT 39 Dexter St., Dedham, Mass. 02026 Director of Slide Collection ELMER C. BALDWIN 400 Tecumseh Road, Syracuse, N. Y. 13224 CHAPTER CHAIRMEN Northwestern CLIFFORD G. LEWIS, 4725 119th Ave. -
Early Cretaceous Lineages of Monocot Flowering Plants
Early Cretaceous lineages of monocot flowering plants Kåre Bremer* Department of Systematic Botany, Evolutionary Biology Centre, Uppsala University, Norbyva¨gen 18D, SE-752 36 Uppsala, Sweden Edited by Peter H. Raven, Missouri Botanical Garden, St. Louis, MO, and approved February 14, 2000 (received for review October 1, 1999) The phylogeny of flowering plants is now rapidly being disclosed tionally complex and not feasible for dating large trees with by analysis of DNA sequence data, and currently, many Cretaceous several reference fossils. fossils of flowering plants are being described. Combining molec- Herein, the focus is on divergence times for the basal nodes of ular phylogenies with reference fossils of known minimum age the monocot phylogeny, and any precision in dating the upper makes it possible to date the nodes of the phylogenetic tree. The nodes of the tree is not attempted. To this end, mean branch dating may be done by counting inferred changes in sequenced lengths from the terminals to the basal nodes of the tree are genes along the branches of the phylogeny and calculating change calculated. Unequal rates in different lineages are manifested as rates by using the reference fossils. Plastid DNA rbcL sequences and unequal branch lengths counting from the root to the terminals eight reference fossils indicate that Ϸ14 of the extant monocot in phylogenetic trees, and the procedure of calculating mean lineages may have diverged from each other during the Early branch lengths reduces the problem of unequal rates toward the Cretaceous >100 million years B.P. The lineages are very different base of the tree. -
Phylogeny, Genome Size, and Chromosome Evolution of Asparagales J
Aliso: A Journal of Systematic and Evolutionary Botany Volume 22 | Issue 1 Article 24 2006 Phylogeny, Genome Size, and Chromosome Evolution of Asparagales J. Chris Pires University of Wisconsin-Madison; University of Missouri Ivan J. Maureira University of Wisconsin-Madison Thomas J. Givnish University of Wisconsin-Madison Kenneth J. Systma University of Wisconsin-Madison Ole Seberg University of Copenhagen; Natural History Musem of Denmark See next page for additional authors Follow this and additional works at: http://scholarship.claremont.edu/aliso Part of the Botany Commons Recommended Citation Pires, J. Chris; Maureira, Ivan J.; Givnish, Thomas J.; Systma, Kenneth J.; Seberg, Ole; Peterson, Gitte; Davis, Jerrold I.; Stevenson, Dennis W.; Rudall, Paula J.; Fay, Michael F.; and Chase, Mark W. (2006) "Phylogeny, Genome Size, and Chromosome Evolution of Asparagales," Aliso: A Journal of Systematic and Evolutionary Botany: Vol. 22: Iss. 1, Article 24. Available at: http://scholarship.claremont.edu/aliso/vol22/iss1/24 Phylogeny, Genome Size, and Chromosome Evolution of Asparagales Authors J. Chris Pires, Ivan J. Maureira, Thomas J. Givnish, Kenneth J. Systma, Ole Seberg, Gitte Peterson, Jerrold I. Davis, Dennis W. Stevenson, Paula J. Rudall, Michael F. Fay, and Mark W. Chase This article is available in Aliso: A Journal of Systematic and Evolutionary Botany: http://scholarship.claremont.edu/aliso/vol22/iss1/ 24 Asparagales ~£~2COTSgy and Evolution Excluding Poales Aliso 22, pp. 287-304 © 2006, Rancho Santa Ana Botanic Garden PHYLOGENY, GENOME SIZE, AND CHROMOSOME EVOLUTION OF ASPARAGALES 1 7 8 1 3 9 J. CHRIS PIRES, • • IVAN J. MAUREIRA, THOMAS J. GIVNISH, 2 KENNETH J. SYTSMA, 2 OLE SEBERG, · 9 4 6 GITTE PETERSEN, 3· JERROLD I DAVIS, DENNIS W. -
Multigene Analyses of Monocot Relationships: a Summary
Aliso 22, pp. 63–75 ᭧ 2006, Rancho Santa Ana Botanic Garden MULTIGENE ANALYSES OF MONOCOT RELATIONSHIPS: A SUMMARY MARK W. C HASE1,13 MICHAEL F. F AY,1 DION S. DEVEY,1 OLIVIER MAURIN,1 NINA RØNSTED,1 T. J ONATHAN DAVIES,1 YOHAN PILLON,1 GITTE PETERSEN,2,14 OLE SEBERG,2,14 MINORU N. TAMURA,3 CONNY B. ASMUSSEN,4 KHIDIR HILU,5 THOMAS BORSCH,6 JERROLD IDAVIS,7 DENNIS W. S TEVENSON,8 J. CHRIS PIRES,9,15 THOMAS J. GIVNISH,10 KENNETH J. SYTSMA,10 MARC A. MCPHERSON,11,16 SEAN W. G RAHAM,12 AND HARDEEP S. RAI12 1Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3DS, UK; 2Botanical Institute, University of Copenhagen, Gothersgade 140, DK-1123 Copenhagen K, Denmark; 3Botanical Gardens, Graduate School of Science, Osaka City University, 2000 Kisaichi, Katano-shi, Osaka 576-0004, Japan; 4Botany Section, Department of Ecology, Royal Veterinary and Agricultural University, Rolighedsvej 21, DK-1958 Frederiksberg C, Denmark; 5Department of Biology, Virginia Polytechnic Institute and State University, Blacksburg, Virginia 24061, USA; 6Botanisches Institut und Botanischer Garten, Friedrich-Wilhelms-Universita¨t Bonn, Meckenheimer Allee 170, D-53115 Bonn, Germany; 7L. H. Bailey Hortorium and Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA; 8Institute of Systematic Botany, New York Botanical Garden, Bronx, New York 10458, USA; 9Department of Agronomy, University of Wisconsin, Madison, Wisconsin 53706, USA; 10Department of Botany, Birge Hall, University of Wisconsin, Madison, Wisconsin 53706, USA; 11Department of Biological Sciences, CW 405, Biological Sciences Centre, University of Alberta, Edmonton, Alberta T6G 2E9, Canada; 12UBC Botanical Garden and Centre for Plant Research, University of British Columbia, 6804 SW Marine Drive, Vancouver, British Columbia V6T 1Z4, Canada. -
And Type the TITLE of YOUR WORK in All Caps
PHYLOGENOMIC PLACEMENT OF ANCIENT POLYPLOIDY EVENTS WITHIN THE POALES AND AGAVOIDEAE (ASPARAGALES) by MICHAEL RAMON MCKAIN (Under the Direction of James H. Leebens-Mack) ABSTRACT Polyploidy has been an important component to the evolution of angiosperms. Recent studies have shown that an ancient polyploid (paleopolyploid) event can be traced to the lineage leading to the diversification of all angiosperms, and it has long been known that recurring polyploid events can be found throughout the angiosperm tree of life. With the advent of high- throughput sequencing, the prominent place of paleopolyploid events in the evolutionary history of angiosperms has become increasingly clear. Polyploidy is thought to spur both diversification and trait innovation through the duplication and reworking of gene networks. Understanding the evolutionary impact of paleopolyploidy within the angiosperms requires knowing when these events occurred during angiosperm evolution. This study utilizes a high-throughput phylogenomic approach to identify the timing of paleopolyploid events by comparing the origin of paralogous genes within a gene family to a known species tree. Transcriptome data derived from taxa in lineages with previously little to no genomic data, were utilized to assess the timing of duplication events within hundreds of gene families. Previously described paleopolyploid events in the history of grasses, identified through analyses of syntenic blocks within Poaceae genomes, were placed on the Poales phylogeny and the implications of these events were considered. Additionally, a previously unverified paleopolyploidy event was found to have occurred in a common ancestor of all members of the Asparagales and commelinids (including Poales, Zingiberales, Commelinales, Arecales and Dasypogonales). The phylogeny of the Asparagaceae subfamily Agavoideae was resolved using whole chloroplast genomes, and two previously unknown paleopolyploid events were described within the context of that phylogeny. -
5, and J. Chris Pires
American Journal of Botany 99(2): 330–348. 2012. Q UALITY AND QUANTITY OF DATA RECOVERED FROM MASSIVELY PARALLEL SEQUENCING: EXAMPLES IN 1 ASPARAGALES AND POACEAE P . R OXANNE S TEELE 2 , K ATE L. HERTWECK 3 , D USTIN M AYFIELD 4 , M ICHAEL R. MCKAIN 5 , J AMES L EEBENS-MACK 5 , AND J. CHRIS P IRES 3,6 2 Department of Biology, 6001 W. Dodge Street, University of Nebraska at Omaha, Omaha, Nebraska 68182-0040 USA; 3 National Evolutionary Synthesis Center, 2024 W. Main Street, Suite A200, Durham, North Carolina 27705-4667 USA; 4 Biological Sciences, 1201 Rollins St., Bond LSC 311, University of Missouri, Columbia, Missouri 65211 USA; and 5 Plant Biology, 4504 Miller Plant Sciences, University of Georgia, Athens, Georgia 30602 USA • Premise of the study: Genome survey sequences (GSS) from massively parallel sequencing have potential to provide large, cost-effective data sets for phylogenetic inference, replace single gene or spacer regions as DNA barcodes, and provide a plethora of data for other comparative molecular evolution studies. Here we report on the application of this method to estimat- ing the molecular phylogeny of core Asparagales, investigating plastid gene losses, assembling complete plastid genomes, and determining the type and quality of assembled genomic data attainable from Illumina 80 – 120-bp reads. • Methods: We sequenced total genomic DNA from samples in two lineages of monocotyledonous plants, Poaceae and Aspara- gales, on the Illumina platform in a multiplex arrangement. We compared reference-based assemblies to de novo contigs, evaluated consistency of assemblies resulting from use of various references sequences, and assessed our methods to obtain sequence assemblies in nonmodel taxa.