Allen Press x DTPro System GALLEY 3 File # 01ee Name /alis/22_101 12/16/2005 01:24PM Plate # 0-Composite pg 3 # 1 Aliso, 22(1), pp. 3±20 q 2006, by The Rancho Santa Ana Botanic Garden, Claremont, CA 91711-3157 ROBUST INFERENCE OF MONOCOT DEEP PHYLOGENY USING AN EXPANDED MULTIGENE PLASTID DATA SET SEAN W. G RAHAM,1,6 JESSIE M. ZGURSKI,2 MARC A. MCPHERSON,2,7 DONNA M. CHERNIAWSKY,2,8 JEFFERY M. SAARELA,1 ELVIRA S. C. HORNE,2 SELENA Y. S MITH,2 WINSON A. WONG,2 HEATH E. O'BRIEN,2,9 VINCENT L. BIRON,2,10 J. CHRIS PIRES,3 RICHARD G. OLMSTEAD,4 MARK W. C HASE,5 AND HARDEEP S. RAI1 1UBC Botanical Garden and Centre for Plant Research, University of British Columbia, 6804 SW Marine Drive, Vancouver, British Columbia V6T 1Z4, Canada; 2Department of Biological Sciences, University of Alberta, Edmonton, Alberta T6G 2E9, Canada; 3Department of Agronomy, University of Wisconsin, Madison, Wisconsin 53706, USA; 4Department of Biology, Box 351800, University of Washington, Seattle, Washington 98195, USA; 5Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AB, UK 6Corresponding author (
[email protected]) ABSTRACT We use multiple photosynthetic, chlororespiratory, and plastid translation apparatus loci and their associated noncoding regions (ca. 16 kb per taxon, prior to alignment) to make strongly supported inferences of the deep internal branches of monocot phylogeny. Most monocot relationships are robust (an average of ca. 91% bootstrap support per branch examined), including those poorly supported or unresolved in other studies. Our data strongly support a sister-group relationship between Asparagales and the commelinid monocots, the inclusion of the orchids in Asparagales, and the status of Petro- saviaceae as the sister group of all monocots except Acorus and Alismatales.