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University of California, San Diego
UNIVERSITY OF CALIFORNIA, SAN DIEGO Computational Methods for Parameter Estimation in Nonlinear Models A dissertation submitted in partial satisfaction of the requirements for the degree Doctor of Philosophy in Physics with a Specialization in Computational Physics by Bryan Andrew Toth Committee in charge: Professor Henry D. I. Abarbanel, Chair Professor Philip Gill Professor Julius Kuti Professor Gabriel Silva Professor Frank Wuerthwein 2011 Copyright Bryan Andrew Toth, 2011 All rights reserved. The dissertation of Bryan Andrew Toth is approved, and it is acceptable in quality and form for publication on microfilm and electronically: Chair University of California, San Diego 2011 iii DEDICATION To my grandparents, August and Virginia Toth and Willem and Jane Keur, who helped put me on a lifelong path of learning. iv EPIGRAPH An Expert: One who knows more and more about less and less, until eventually he knows everything about nothing. |Source Unknown v TABLE OF CONTENTS Signature Page . iii Dedication . iv Epigraph . v Table of Contents . vi List of Figures . ix List of Tables . x Acknowledgements . xi Vita and Publications . xii Abstract of the Dissertation . xiii Chapter 1 Introduction . 1 1.1 Dynamical Systems . 1 1.1.1 Linear and Nonlinear Dynamics . 2 1.1.2 Chaos . 4 1.1.3 Synchronization . 6 1.2 Parameter Estimation . 8 1.2.1 Kalman Filters . 8 1.2.2 Variational Methods . 9 1.2.3 Parameter Estimation in Nonlinear Systems . 9 1.3 Dissertation Preview . 10 Chapter 2 Dynamical State and Parameter Estimation . 11 2.1 Introduction . 11 2.2 DSPE Overview . 11 2.3 Formulation . 12 2.3.1 Least Squares Minimization . -
An Algorithm Based on Semidefinite Programming for Finding Minimax
Takustr. 7 Zuse Institute Berlin 14195 Berlin Germany BELMIRO P.M. DUARTE,GUILLAUME SAGNOL,WENG KEE WONG An algorithm based on Semidefinite Programming for finding minimax optimal designs ZIB Report 18-01 (December 2017) Zuse Institute Berlin Takustr. 7 14195 Berlin Germany Telephone: +49 30-84185-0 Telefax: +49 30-84185-125 E-mail: [email protected] URL: http://www.zib.de ZIB-Report (Print) ISSN 1438-0064 ZIB-Report (Internet) ISSN 2192-7782 An algorithm based on Semidefinite Programming for finding minimax optimal designs Belmiro P.M. Duarte a,b, Guillaume Sagnolc, Weng Kee Wongd aPolytechnic Institute of Coimbra, ISEC, Department of Chemical and Biological Engineering, Portugal. bCIEPQPF, Department of Chemical Engineering, University of Coimbra, Portugal. cTechnische Universität Berlin, Institut für Mathematik, Germany. dDepartment of Biostatistics, Fielding School of Public Health, UCLA, U.S.A. Abstract An algorithm based on a delayed constraint generation method for solving semi- infinite programs for constructing minimax optimal designs for nonlinear models is proposed. The outer optimization level of the minimax optimization problem is solved using a semidefinite programming based approach that requires the de- sign space be discretized. A nonlinear programming solver is then used to solve the inner program to determine the combination of the parameters that yields the worst-case value of the design criterion. The proposed algorithm is applied to find minimax optimal designs for the logistic model, the flexible 4-parameter Hill homoscedastic model and the general nth order consecutive reaction model, and shows that it (i) produces designs that compare well with minimax D−optimal de- signs obtained from semi-infinite programming method in the literature; (ii) can be applied to semidefinite representable optimality criteria, that include the com- mon A−; E−; G−; I− and D-optimality criteria; (iii) can tackle design problems with arbitrary linear constraints on the weights; and (iv) is fast and relatively easy to use. -
Julia, My New Friend for Computing and Optimization? Pierre Haessig, Lilian Besson
Julia, my new friend for computing and optimization? Pierre Haessig, Lilian Besson To cite this version: Pierre Haessig, Lilian Besson. Julia, my new friend for computing and optimization?. Master. France. 2018. cel-01830248 HAL Id: cel-01830248 https://hal.archives-ouvertes.fr/cel-01830248 Submitted on 4 Jul 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. « Julia, my new computing friend? » | 14 June 2018, IETR@Vannes | By: L. Besson & P. Haessig 1 « Julia, my New frieNd for computiNg aNd optimizatioN? » Intro to the Julia programming language, for MATLAB users Date: 14th of June 2018 Who: Lilian Besson & Pierre Haessig (SCEE & AUT team @ IETR / CentraleSupélec campus Rennes) « Julia, my new computing friend? » | 14 June 2018, IETR@Vannes | By: L. Besson & P. Haessig 2 AgeNda for today [30 miN] 1. What is Julia? [5 miN] 2. ComparisoN with MATLAB [5 miN] 3. Two examples of problems solved Julia [5 miN] 4. LoNger ex. oN optimizatioN with JuMP [13miN] 5. LiNks for more iNformatioN ? [2 miN] « Julia, my new computing friend? » | 14 June 2018, IETR@Vannes | By: L. Besson & P. Haessig 3 1. What is Julia ? Open-source and free programming language (MIT license) Developed since 2012 (creators: MIT researchers) Growing popularity worldwide, in research, data science, finance etc… Multi-platform: Windows, Mac OS X, GNU/Linux.. -
[20Pt]Algorithms for Constrained Optimization: [ 5Pt]
SOL Optimization 1970s 1980s 1990s 2000s 2010s Summary 2020s Algorithms for Constrained Optimization: The Benefits of General-purpose Software Michael Saunders MS&E and ICME, Stanford University California, USA 3rd AI+IoT Business Conference Shenzhen, China, April 25, 2019 Optimization Software 3rd AI+IoT Business Conference, Shenzhen, April 25, 2019 1/39 SOL Optimization 1970s 1980s 1990s 2000s 2010s Summary 2020s SOL Systems Optimization Laboratory George Dantzig, Stanford University, 1974 Inventor of the Simplex Method Father of linear programming Large-scale optimization: Algorithms, software, applications Optimization Software 3rd AI+IoT Business Conference, Shenzhen, April 25, 2019 2/39 SOL Optimization 1970s 1980s 1990s 2000s 2010s Summary 2020s SOL history 1974 Dantzig and Cottle start SOL 1974{78 John Tomlin, LP/MIP expert 1974{2005 Alan Manne, nonlinear economic models 1975{76 MS, MINOS first version 1979{87 Philip Gill, Walter Murray, MS, Margaret Wright (Gang of 4!) 1989{ Gerd Infanger, stochastic optimization 1979{ Walter Murray, MS, many students 2002{ Yinyu Ye, optimization algorithms, especially interior methods This week! UC Berkeley opened George B. Dantzig Auditorium Optimization Software 3rd AI+IoT Business Conference, Shenzhen, April 25, 2019 3/39 SOL Optimization 1970s 1980s 1990s 2000s 2010s Summary 2020s Optimization problems Minimize an objective function subject to constraints: 0 x 1 min '(x) st ` ≤ @ Ax A ≤ u c(x) x variables 0 1 A matrix c1(x) B . C c(x) nonlinear functions @ . A c (x) `; u bounds m Optimization -
Numericaloptimization
Numerical Optimization Alberto Bemporad http://cse.lab.imtlucca.it/~bemporad/teaching/numopt Academic year 2020-2021 Course objectives Solve complex decision problems by using numerical optimization Application domains: • Finance, management science, economics (portfolio optimization, business analytics, investment plans, resource allocation, logistics, ...) • Engineering (engineering design, process optimization, embedded control, ...) • Artificial intelligence (machine learning, data science, autonomous driving, ...) • Myriads of other applications (transportation, smart grids, water networks, sports scheduling, health-care, oil & gas, space, ...) ©2021 A. Bemporad - Numerical Optimization 2/102 Course objectives What this course is about: • How to formulate a decision problem as a numerical optimization problem? (modeling) • Which numerical algorithm is most appropriate to solve the problem? (algorithms) • What’s the theory behind the algorithm? (theory) ©2021 A. Bemporad - Numerical Optimization 3/102 Course contents • Optimization modeling – Linear models – Convex models • Optimization theory – Optimality conditions, sensitivity analysis – Duality • Optimization algorithms – Basics of numerical linear algebra – Convex programming – Nonlinear programming ©2021 A. Bemporad - Numerical Optimization 4/102 References i ©2021 A. Bemporad - Numerical Optimization 5/102 Other references • Stephen Boyd’s “Convex Optimization” courses at Stanford: http://ee364a.stanford.edu http://ee364b.stanford.edu • Lieven Vandenberghe’s courses at UCLA: http://www.seas.ucla.edu/~vandenbe/ • For more tutorials/books see http://plato.asu.edu/sub/tutorials.html ©2021 A. Bemporad - Numerical Optimization 6/102 Optimization modeling What is optimization? • Optimization = assign values to a set of decision variables so to optimize a certain objective function • Example: Which is the best velocity to minimize fuel consumption ? fuel [ℓ/km] velocity [km/h] 0 30 60 90 120 160 ©2021 A. -
Derivative-Free Optimization: a Review of Algorithms and Comparison of Software Implementations
J Glob Optim (2013) 56:1247–1293 DOI 10.1007/s10898-012-9951-y Derivative-free optimization: a review of algorithms and comparison of software implementations Luis Miguel Rios · Nikolaos V. Sahinidis Received: 20 December 2011 / Accepted: 23 June 2012 / Published online: 12 July 2012 © Springer Science+Business Media, LLC. 2012 Abstract This paper addresses the solution of bound-constrained optimization problems using algorithms that require only the availability of objective function values but no deriv- ative information. We refer to these algorithms as derivative-free algorithms. Fueled by a growing number of applications in science and engineering, the development of derivative- free optimization algorithms has long been studied, and it has found renewed interest in recent time. Along with many derivative-free algorithms, many software implementations have also appeared. The paper presents a review of derivative-free algorithms, followed by a systematic comparison of 22 related implementations using a test set of 502 problems. The test bed includes convex and nonconvex problems, smooth as well as nonsmooth prob- lems. The algorithms were tested under the same conditions and ranked under several crite- ria, including their ability to find near-global solutions for nonconvex problems, improve a given starting point, and refine a near-optimal solution. A total of 112,448 problem instances were solved. We find that the ability of all these solvers to obtain good solutions dimin- ishes with increasing problem size. For the problems used in this study, TOMLAB/MULTI- MIN, TOMLAB/GLCCLUSTER, MCS and TOMLAB/LGO are better, on average, than other derivative-free solvers in terms of solution quality within 2,500 function evaluations. -
TOMLAB –Unique Features for Optimization in MATLAB
TOMLAB –Unique Features for Optimization in MATLAB Bad Honnef, Germany October 15, 2004 Kenneth Holmström Tomlab Optimization AB Västerås, Sweden [email protected] ´ Professor in Optimization Department of Mathematics and Physics Mälardalen University, Sweden http://tomlab.biz Outline of the talk • The TOMLAB Optimization Environment – Background and history – Technology available • Optimization in TOMLAB • Tests on customer supplied large-scale optimization examples • Customer cases, embedded solutions, consultant work • Business perspective • Box-bounded global non-convex optimization • Summary http://tomlab.biz Background • MATLAB – a high-level language for mathematical calculations, distributed by MathWorks Inc. • Matlab can be extended by Toolboxes that adds to the features in the software, e.g.: finance, statistics, control, and optimization • Why develop the TOMLAB Optimization Environment? – A uniform approach to optimization didn’t exist in MATLAB – Good optimization solvers were missing – Large-scale optimization was non-existent in MATLAB – Other toolboxes needed robust and fast optimization – Technical advantages from the MATLAB languages • Fast algorithm development and modeling of applied optimization problems • Many built in functions (ODE, linear algebra, …) • GUIdevelopmentfast • Interfaceable with C, Fortran, Java code http://tomlab.biz History of Tomlab • President and founder: Professor Kenneth Holmström • The company founded 1986, Development started 1989 • Two toolboxes NLPLIB och OPERA by 1995 • Integrated format for optimization 1996 • TOMLAB introduced, ISMP97 in Lausanne 1997 • TOMLAB v1.0 distributed for free until summer 1999 • TOMLAB v2.0 first commercial version fall 1999 • TOMLAB starting sales from web site March 2000 • TOMLAB v3.0 expanded with external solvers /SOL spring 2001 • Dash Optimization Ltd’s XpressMP added in TOMLAB fall 2001 • Tomlab Optimization Inc. -
Theory and Experimentation
Acta Astronautica 122 (2016) 114–136 Contents lists available at ScienceDirect Acta Astronautica journal homepage: www.elsevier.com/locate/actaastro Suboptimal LQR-based spacecraft full motion control: Theory and experimentation Leone Guarnaccia b,1, Riccardo Bevilacqua a,n, Stefano P. Pastorelli b,2 a Department of Mechanical and Aerospace Engineering, University of Florida 308 MAE-A building, P.O. box 116250, Gainesville, FL 32611-6250, United States b Department of Mechanical and Aerospace Engineering, Politecnico di Torino, Corso Duca degli Abruzzi 24, Torino 10129, Italy article info abstract Article history: This work introduces a real time suboptimal control algorithm for six-degree-of-freedom Received 19 January 2015 spacecraft maneuvering based on a State-Dependent-Algebraic-Riccati-Equation (SDARE) Received in revised form approach and real-time linearization of the equations of motion. The control strategy is 18 November 2015 sub-optimal since the gains of the linear quadratic regulator (LQR) are re-computed at Accepted 18 January 2016 each sample time. The cost function of the proposed controller has been compared with Available online 2 February 2016 the one obtained via a general purpose optimal control software, showing, on average, an increase in control effort of approximately 15%, compensated by real-time implement- ability. Lastly, the paper presents experimental tests on a hardware-in-the-loop six- Keywords: Spacecraft degree-of-freedom spacecraft simulator, designed for testing new guidance, navigation, Optimal control and control algorithms for nano-satellites in a one-g laboratory environment. The tests Linear quadratic regulator show the real-time feasibility of the proposed approach. Six-degree-of-freedom & 2016 The Authors. -
Research and Development of an Open Source System for Algebraic Modeling Languages
Vilnius University Institute of Data Science and Digital Technologies LITHUANIA INFORMATICS (N009) RESEARCH AND DEVELOPMENT OF AN OPEN SOURCE SYSTEM FOR ALGEBRAIC MODELING LANGUAGES Vaidas Juseviˇcius October 2020 Technical Report DMSTI-DS-N009-20-05 VU Institute of Data Science and Digital Technologies, Akademijos str. 4, Vilnius LT-08412, Lithuania www.mii.lt Abstract In this work, we perform an extensive theoretical and experimental analysis of the char- acteristics of five of the most prominent algebraic modeling languages (AMPL, AIMMS, GAMS, JuMP, Pyomo), and modeling systems supporting them. In our theoretical comparison, we evaluate how the features of the reviewed languages match with the requirements for modern AMLs, while in the experimental analysis we use a purpose-built test model li- brary to perform extensive benchmarks of the various AMLs. We then determine the best performing AMLs by comparing the time needed to create model instances for spe- cific type of optimization problems and analyze the impact that the presolve procedures performed by various AMLs have on the actual problem-solving times. Lastly, we pro- vide insights on which AMLs performed best and features that we deem important in the current landscape of mathematical optimization. Keywords: Algebraic modeling languages, Optimization, AMPL, GAMS, JuMP, Py- omo DMSTI-DS-N009-20-05 2 Contents 1 Introduction ................................................................................................. 4 2 Algebraic Modeling Languages ......................................................................... -
Open Source Tools for Optimization in Python
Open Source Tools for Optimization in Python Ted Ralphs Sage Days Workshop IMA, Minneapolis, MN, 21 August 2017 T.K. Ralphs (Lehigh University) Open Source Optimization August 21, 2017 Outline 1 Introduction 2 COIN-OR 3 Modeling Software 4 Python-based Modeling Tools PuLP/DipPy CyLP yaposib Pyomo T.K. Ralphs (Lehigh University) Open Source Optimization August 21, 2017 Outline 1 Introduction 2 COIN-OR 3 Modeling Software 4 Python-based Modeling Tools PuLP/DipPy CyLP yaposib Pyomo T.K. Ralphs (Lehigh University) Open Source Optimization August 21, 2017 Caveats and Motivation Caveats I have no idea about the background of the audience. The talk may be either too basic or too advanced. Why am I here? I’m not a Sage developer or user (yet!). I’m hoping this will be a chance to get more involved in Sage development. Please ask lots of questions so as to guide me in what to dive into! T.K. Ralphs (Lehigh University) Open Source Optimization August 21, 2017 Mathematical Optimization Mathematical optimization provides a formal language for describing and analyzing optimization problems. Elements of the model: Decision variables Constraints Objective Function Parameters and Data The general form of a mathematical optimization problem is: min or max f (x) (1) 8 9 < ≤ = s.t. gi(x) = bi (2) : ≥ ; x 2 X (3) where X ⊆ Rn might be a discrete set. T.K. Ralphs (Lehigh University) Open Source Optimization August 21, 2017 Types of Mathematical Optimization Problems The type of a mathematical optimization problem is determined primarily by The form of the objective and the constraints. -
MODELING LANGUAGES in MATHEMATICAL OPTIMIZATION Applied Optimization Volume 88
MODELING LANGUAGES IN MATHEMATICAL OPTIMIZATION Applied Optimization Volume 88 Series Editors: Panos M. Pardalos University o/Florida, U.S.A. Donald W. Hearn University o/Florida, U.S.A. MODELING LANGUAGES IN MATHEMATICAL OPTIMIZATION Edited by JOSEF KALLRATH BASF AG, GVC/S (Scientific Computing), 0-67056 Ludwigshafen, Germany Dept. of Astronomy, Univ. of Florida, Gainesville, FL 32611 Kluwer Academic Publishers Boston/DordrechtiLondon Distributors for North, Central and South America: Kluwer Academic Publishers 101 Philip Drive Assinippi Park Norwell, Massachusetts 02061 USA Telephone (781) 871-6600 Fax (781) 871-6528 E-Mail <[email protected]> Distributors for all other countries: Kluwer Academic Publishers Group Post Office Box 322 3300 AlI Dordrecht, THE NETHERLANDS Telephone 31 78 6576 000 Fax 31 786576474 E-Mail <[email protected]> .t Electronic Services <http://www.wkap.nl> Library of Congress Cataloging-in-Publication Kallrath, Josef Modeling Languages in Mathematical Optimization ISBN-13: 978-1-4613-7945-4 e-ISBN-13:978-1-4613 -0215 - 5 DOl: 10.1007/978-1-4613-0215-5 Copyright © 2004 by Kluwer Academic Publishers Softcover reprint of the hardcover 1st edition 2004 All rights reserved. No part ofthis pUblication may be reproduced, stored in a retrieval system or transmitted in any form or by any means, electronic, mechanical, photo-copying, microfilming, recording, or otherwise, without the prior written permission ofthe publisher, with the exception of any material supplied specifically for the purpose of being entered and executed on a computer system, for exclusive use by the purchaser of the work. Permissions for books published in the USA: P"§.;r.m.i.§J?i..QD.§.@:w.k~p" ..,.g.Qm Permissions for books published in Europe: [email protected] Printed on acid-free paper. -
GEKKO Documentation Release 1.0.1
GEKKO Documentation Release 1.0.1 Logan Beal, John Hedengren Aug 31, 2021 Contents 1 Overview 1 2 Installation 3 3 Project Support 5 4 Citing GEKKO 7 5 Contents 9 6 Overview of GEKKO 89 Index 91 i ii CHAPTER 1 Overview GEKKO is a Python package for machine learning and optimization of mixed-integer and differential algebraic equa- tions. It is coupled with large-scale solvers for linear, quadratic, nonlinear, and mixed integer programming (LP, QP, NLP, MILP, MINLP). Modes of operation include parameter regression, data reconciliation, real-time optimization, dynamic simulation, and nonlinear predictive control. GEKKO is an object-oriented Python library to facilitate local execution of APMonitor. More of the backend details are available at What does GEKKO do? and in the GEKKO Journal Article. Example applications are available to get started with GEKKO. 1 GEKKO Documentation, Release 1.0.1 2 Chapter 1. Overview CHAPTER 2 Installation A pip package is available: pip install gekko Use the —-user option to install if there is a permission error because Python is installed for all users and the account lacks administrative priviledge. The most recent version is 0.2. You can upgrade from the command line with the upgrade flag: pip install--upgrade gekko Another method is to install in a Jupyter notebook with !pip install gekko or with Python code, although this is not the preferred method: try: from pip import main as pipmain except: from pip._internal import main as pipmain pipmain(['install','gekko']) 3 GEKKO Documentation, Release 1.0.1 4 Chapter 2. Installation CHAPTER 3 Project Support There are GEKKO tutorials and documentation in: • GitHub Repository (examples folder) • Dynamic Optimization Course • APMonitor Documentation • GEKKO Documentation • 18 Example Applications with Videos For project specific help, search in the GEKKO topic tags on StackOverflow.