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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
§4-71-6.5 LIST of CONDITIONALLY APPROVED ANIMALS November
§4-71-6.5 LIST OF CONDITIONALLY APPROVED ANIMALS November 28, 2006 SCIENTIFIC NAME COMMON NAME INVERTEBRATES PHYLUM Annelida CLASS Oligochaeta ORDER Plesiopora FAMILY Tubificidae Tubifex (all species in genus) worm, tubifex PHYLUM Arthropoda CLASS Crustacea ORDER Anostraca FAMILY Artemiidae Artemia (all species in genus) shrimp, brine ORDER Cladocera FAMILY Daphnidae Daphnia (all species in genus) flea, water ORDER Decapoda FAMILY Atelecyclidae Erimacrus isenbeckii crab, horsehair FAMILY Cancridae Cancer antennarius crab, California rock Cancer anthonyi crab, yellowstone Cancer borealis crab, Jonah Cancer magister crab, dungeness Cancer productus crab, rock (red) FAMILY Geryonidae Geryon affinis crab, golden FAMILY Lithodidae Paralithodes camtschatica crab, Alaskan king FAMILY Majidae Chionocetes bairdi crab, snow Chionocetes opilio crab, snow 1 CONDITIONAL ANIMAL LIST §4-71-6.5 SCIENTIFIC NAME COMMON NAME Chionocetes tanneri crab, snow FAMILY Nephropidae Homarus (all species in genus) lobster, true FAMILY Palaemonidae Macrobrachium lar shrimp, freshwater Macrobrachium rosenbergi prawn, giant long-legged FAMILY Palinuridae Jasus (all species in genus) crayfish, saltwater; lobster Panulirus argus lobster, Atlantic spiny Panulirus longipes femoristriga crayfish, saltwater Panulirus pencillatus lobster, spiny FAMILY Portunidae Callinectes sapidus crab, blue Scylla serrata crab, Samoan; serrate, swimming FAMILY Raninidae Ranina ranina crab, spanner; red frog, Hawaiian CLASS Insecta ORDER Coleoptera FAMILY Tenebrionidae Tenebrio molitor mealworm, -
Family-Bagridae-Overview-PDF.Pdf
FAMILY Bagridae Bleeker, 1858 - naked catfishes, bagrid catfishes [=Bagri, Bagrichthyoidei, Ritae, Bagrichthyes, Porcinae, Mystidae, Mystini, Bagroidinae, Pelteobagrini, Batasinae] GENUS Bagrichthys Bleeker, 1857 - bagrid catfishes [=Pseudobagrichthys] Species Bagrichthys hypselopterus (Bleeker, 1852) - blacklancer catfish Species Bagrichthys macracanthus (Bleeker, 1854) - Lamatang blacklancer catfish Species Bagrichthys macropterus (Bleeker, 1854) - false blacklancer Species Bagrichthys majusculus Ng, 2002 - Mun blacklancer Species Bagrichthys micranodus Roberts, 1989 - Kapuas blacklancer Species Bagrichthys obscurus Ng, 1999 - obscure blacklancer Species Bagrichthys vaillantii (Popta, 1906) - Vaillant's blacklancer [=macropterus] GENUS Bagroides Bleeker, 1851 - bagrid catfishes Species Bagroides melapterus Bleeker, 1851 - Bornean bagroides [=melanopterus] GENUS Bagrus Bosc, 1816 - bagrid catfishes Species Bagrus bajad (Forsskal, 1775) - bayad [=macropterus] Species Bagrus caeruleus Roberts & Stewart, 1976 - Lower Congo bagrus Species Bagrus degeni Boulenger, 1906 - Victoria bagrus Species Bagrus docmak (Forsskal, 1775) - semutundu [=koenigi, niger] Species Bagrus filamentosus Pellegrin, 1924 - Niger bagrus Species Bagrus lubosicus Lonnberg, 1924 - Lubosi bagrus Species Bagrus meridionalis Gunther, 1894 - kampango, kampoyo Species Bagrus orientalis Boulenger, 1902 - Pangani bagrus Species Bagrus tucumanus Burmeister, 1861- Tucuman bagrus Species Bagrus ubangensis Boulenger, 1902 - Ubangi bagrus Species Bagrus urostigma Vinciguerra, 1895 -
Inland Fisheries Resource Enhancement and Conservation in Asia Xi RAP PUBLICATION 2010/22
RAP PUBLICATION 2010/22 Inland fisheries resource enhancement and conservation in Asia xi RAP PUBLICATION 2010/22 INLAND FISHERIES RESOURCE ENHANCEMENT AND CONSERVATION IN ASIA Edited by Miao Weimin Sena De Silva Brian Davy FOOD AND AGRICULTURE ORGANIZATION OF THE UNITED NATIONS REGIONAL OFFICE FOR ASIA AND THE PACIFIC Bangkok, 2010 i The designations employed and the presentation of material in this information product do not imply the expression of any opinion whatsoever on the part of the Food and Agriculture Organization of the United Nations (FAO) concerning the legal or development status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries. The mention of specific companies or products of manufacturers, whether or not these have been patented, does not imply that these have been endorsed or recommended by FAO in preference to others of a similar nature that are not mentioned. ISBN 978-92-5-106751-2 All rights reserved. Reproduction and dissemination of material in this information product for educational or other non-commercial purposes are authorized without any prior written permission from the copyright holders provided the source is fully acknowledged. Reproduction of material in this information product for resale or other commercial purposes is prohibited without written permission of the copyright holders. Applications for such permission should be addressed to: Chief Electronic Publishing Policy and Support Branch Communication Division FAO Viale delle Terme di Caracalla, 00153 Rome, Italy or by e-mail to: [email protected] © FAO 2010 For copies please write to: Aquaculture Officer FAO Regional Office for Asia and the Pacific Maliwan Mansion, 39 Phra Athit Road Bangkok 10200 THAILAND Tel: (+66) 2 697 4119 Fax: (+66) 2 697 4445 E-mail: [email protected] For bibliographic purposes, please reference this publication as: Miao W., Silva S.D., Davy B. -
Dong-Kyun KIM1, 2, Hyunbin JO1, Wan-Ok LEE1, Kiyun PARK1, and Ihn-Sil KWAK*1, 3
ACTA ICHTHYOLOGICA ET PISCATORIA (2020) 50 (2): 209–213 DOI: 10.3750/AIEP/02790 EVALUATION OF LENGTH–WEIGHT RELATIONS FOR 15 FISH SPECIES (ACTINOPTERYGII) FROM THE SEOMJIN RIVER BASIN IN SOUTH KOREA Dong-Kyun KIM1, 2, Hyunbin JO1, Wan-Ok LEE1, Kiyun PARK1, and Ihn-Sil KWAK*1, 3 1 Fisheries Science Institute, Chonnam National University, Yeosu, Republic of Korea 2 K-water Research Institute, Daejeon, Republic of Korea 3 Faculty of Marine Technology, Chonnam National University, Yeosu, Republic of Korea Kim D.-K., Jo H., Lee W.-O., Park K., Kwak I.-S. 2020. Evaluation of length–weight relations for 15 fish species (Actinopterygii) from the Seomjin River basin in South Korea. Acta Ichthyol. Piscat. 50 (2): 209–213. Abstract. This study demonstrates the estimation of length–weight relations (LWR) for freshwater fishes from the Seomjin River basin in South Korea. The LWR estimation is based on the 15 species representing Cyprinidae: Rhodeus uyekii (Mori, 1935), Rhodeus notatus Nichols, 1929, Tanakia koreensis (Kim et Kim, 1990), Acheilognathus rhombeus (Temminck et Schlegel, 1846), Pseudorasbora parva (Temminck et Schlegel, 1846), Coreoleuciscus aeruginos Song et Bang, 2015, Sarcocheilichthys nigripinnis (Günther, 1873), Squalidus gracilis majimae (Jordan et Hubbs, 1925), Squalidus chankaensis tsuchigae (Jordan et Hubbs, 1925), Hemibarbus longirostris (Regan, 1908), and Opsariichthys uncirostris (Temminck et Schlegel, 1846); Cobitidae: Cobitis longicorpus Kim, Choi et Nalbant, 1976 and Cobitis tetralineata (Kim, Park et Nalbant, 1999); Bagridae: Tachysurus ussuriensis (Dybowski, 1872); and Amblycipidae: Liobagrus somjinensis Park et Kim, 2011. Our study provides new information of LWRs for eight species. The LWRs for those species have not been reported yet in FishBase. -
Zootaxa, Pseudobagrus (Teleostei: Siluriformes: Bagridae)
Zootaxa 1067: 49–57 (2005) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA 1067 Copyright © 2005 Magnolia Press ISSN 1175-5334 (online edition) A new species of Pseudobagrus (Teleostei: Siluriformes: Bagridae) from southern China JIE LI *, XIANGLIN CHEN *1 & BOSCO P.L. CHAN ** * Fish Laboratory, College of Life Science, South China Normal University, Guangzhou, Postcode: 510631, China; Email: [email protected] ** Kadoorie Farm & Botanic Garden, China Programme, Lam Kam Road, Tai Po, New Territories, Hong Kong SAR, China; Email: [email protected] Abstract A new species of bagrid catfish, Pseudobagrus gracilis, is described from specimens collected from the Zhujiang (Pearl River) basin, southern China. It closely resembles P. adiposalis Oshima and P. ussuriensis (Dybowski), but differs in having a large elliptical eye (19.8–24.4% HL), a short maxillary barbel not reaching the posterior margin of the eye, a lightly serrated posterior edge on the second dorsal spine, a caudal fin slightly emarginated with upper lobe slighter longer than lower lobe, frontal concave with a smooth surface, and supraoccipital process short (far from the first basal bone of the dorsal spine). Key words: Siluriformes, Bagridae, Pseudobagrus, new species, southern China Introduction All species of the bagrid catfish genus Pseudobagrus Bleeker, 1859 share the following features: an inferior mouth; narial openings widely separated; four pairs of barbels; top of head covered by skin, except the posterior process of supraoccipital in some species; two dorsal spines; pelvic fin small; caudal fin emarginate, truncate or round. Currently 15 nominal species of Pseudobagrus are recognised in China (Zheng and Dai, 1999), accounting for about half of the worlds species in the genus (see Ng, 2003). -
Studies of Acute Hypoxia and Reoxygenation on Oxygen Sensors, Respiratory Metabolism, Oxidative Stress, and Apoptosis in Hybrid Yellow Catfsh "Huangyou-1"
Studies of Acute Hypoxia and Reoxygenation on Oxygen Sensors, Respiratory Metabolism, Oxidative Stress, and Apoptosis in Hybrid Yellow Catsh "Huangyou-1" Xueying Pei Nanjing Normal University Hongyan Zhang Nanjing Normal University Xinyu Zhang Nanjing Normal University Xiang Zheng Nanjing Normal University Jie Li Nanjing Normal University Mingxu Chu Nanjing Normal University Jie Mei Huazhong Agricultural University: Huazhong Agriculture University Tao Wang Nanjing Normal University Shaowu Yin ( [email protected] ) Nanjing Normal University https://orcid.org/0000-0003-0802-0930 Original research Keywords: hybrid yellow catsh "Huangyou-1" (Pelteobagrus fulvidraco × Pelteobagrus vachelli ), hypoxia, reoxygenation, oxygen sensors, respiratory metabolism, apoptosis Posted Date: February 1st, 2021 DOI: https://doi.org/10.21203/rs.3.rs-162204/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/30 Version of Record: A version of this preprint was published at Fish Physiology and Biochemistry on July 27th, 2021. See the published version at https://doi.org/10.1007/s10695-021-00989-8. Page 2/30 Abstract The regulation mechanism of the hybrid yellow catsh “Huangyou-1” was assessed under conditions of hypoxia and reoxygenation by examination of oxygen sensors and by monitoring respiratory metabolism, oxidative stress, and apoptosis. The expressions of genes related to oxygen sensors (HIF-1α, HIF-2α, VHL, HIF-1β, PHD2, and FIH-1) were upregulated in the brain and liver during hypoxia, and recovered compared with control upon reoxygenation. The expressions of genes related to glycolysis (HK1, PGK1, PGAM2, PFK, and LDH) were increased during hypoxia and then recovered compared with control upon reoxygenation. -
Description of Myxobolus Xiantaoensis N. Sp. from the Fins of Yellow Catfish in China: a Species Previously Attributed to Myxobo
Parasitology Research (2019) 118:1137–1146 https://doi.org/10.1007/s00436-019-06244-7 FISH PARASITOLOGY - ORIGINAL PAPER Description of Myxobolus xiantaoensis n. sp. from the fins of yellow catfish in China: a species previously attributed to Myxobolus physophilus Reuss, 1906 in Chinese records Urfa Bin Tahir1,2 & QingXiang Guo1,2 & DanDan Zhao1,2 & Yang Liu1,2 & Zemao Gu1,2 Received: 8 June 2018 /Accepted: 31 January 2019 /Published online: 5 March 2019 # Springer-Verlag GmbH Germany, part of Springer Nature 2019 Abstract Myxozoans are economically important cnidarian endoparasites. Members of this group have been traditionally characterized by a morphology-based taxonomic system. Because myxozoans possess few morphological characters, these data are routinely accompanied by biological traits (host/organ/tissue specificity) and molecular data when describing or identifying myxozoan species. In the present study, a species of Myxobolus was collected from the fins of yellow catfish Tachysurus fulvidraco Richardson, 1846, which was consistent in spore morphology and host/organ specificity with Chinese records of Myxobolus physophilus Reuss, 1906. However, these earlier records and our own findings are inconsistent with the original description of M. physophilus from Russia. Specifically, there are differences in spore morphology (shape, intercapsular appendix, and polar capsule size), the infection site (air bladder vs. fins), and the host affinity (common rudd vs. yellow catfish). The inconsistencies allow us to conclude that both the present Myxobolus species and Chinese records of M. physophilus are distinct from the original description of M. physophilus and represent a new Myxobolus species, which we named Myxobolus xiantaoensis n. sp. Keywords Myxozoan . -
Viet Nam Ramsar Information Sheet Published on 16 October 2018
RIS for Site no. 2360, Van Long Wetland Nature Reserve, Viet Nam Ramsar Information Sheet Published on 16 October 2018 Viet Nam Van Long Wetland Nature Reserve Designation date 10 February 2017 Site number 2360 Coordinates 20°23'35"N 105°51'10"E Area 2 736,00 ha https://rsis.ramsar.org/ris/2360 Created by RSIS V.1.6 on - 16 October 2018 RIS for Site no. 2360, Van Long Wetland Nature Reserve, Viet Nam Color codes Fields back-shaded in light blue relate to data and information required only for RIS updates. Note that some fields concerning aspects of Part 3, the Ecological Character Description of the RIS (tinted in purple), are not expected to be completed as part of a standard RIS, but are included for completeness so as to provide the requested consistency between the RIS and the format of a ‘full’ Ecological Character Description, as adopted in Resolution X.15 (2008). If a Contracting Party does have information available that is relevant to these fields (for example from a national format Ecological Character Description) it may, if it wishes to, include information in these additional fields. 1 - Summary Summary Van Long Wetland Nature Reserve is a wetland comprised of rivers and a shallow lake with large amounts of submerged vegetation. The wetland area is centred on a block of limestone karst that rises abruptly from the flat coastal plain of the northern Vietnam. It is located within the Gia Vien district of Ninh Binh Province. The wetland is one of the rarest intact lowland inland wetlands remaining in the Red River Delta, Vietnam. -
Check List of the Freshwater Fishes of Uruguay (CLOFF-UY)
Ichthyological Contributions of PecesCriollos 28: 1-40 (2014) 1 Check List of the Freshwater Fishes of Uruguay (CLOFF-UY). Thomas O. Litz1 & Stefan Koerber2 1 Friedhofstr. 8, 88448 Attenweiler, Germany, [email protected] 2 Friesenstr. 11, 45476 Muelheim, Germany, [email protected] Introduction The purpose of this paper to present the first complete list of freshwater fishes from Uruguay based on the available literature. It would have been impossible to review al papers from the beginning of ichthyology, starting with authors as far back as Larrañaga or Jenyns, who worked the preserved fishes Darwin brought back home from his famous trip around the world. The publications of Nion et al. (2002) and Teixera de Mello et al. (2011) seemed to be a good basis where to start from. Both are not perfect for this purpose but still valuable sources and we highly recommend both as literature for the interested reader. Nion et al. (2002) published a list of both, the freshwater and marine species of Uruguay, only permitting the already knowledgeable to make the difference and recognize the freshwater fishes. Also, some time has passed since then and the systematic of this paper is outdated in many parts. Teixero de Mello et al. (2011) recently presented an excellent collection of the 100 most abundant species with all relevant information and colour pictures, allowing an easy approximate identification. The names used there are the ones currently considered valid. Uncountable papers have been published on the freshwater fishes of Uruguay, some with regional or local approaches, others treating with certain groups of fishes. -
Geometric Morphometrics and Phylogeny of the Catfish Genus Mystus Scopoli (Siluriformes:Bagridae) and North American Cyprinids (Cypriniformes)
Geometric Morphometrics and Phylogeny of the Catfish genus Mystus Scopoli (Siluriformes:Bagridae) and North American Cyprinids (Cypriniformes) by Shobnom Ferdous A dissertation submitted to the Graduate Faculty of Auburn University in partial fulfillment of the requirements for the Degree of Doctor of Philosophy Auburn, Alabama December 14, 2013 Copyright 2013 by Shobnom Ferdous Approved by Jonathan W. Armbruster, Department of Biological Sciences, Auburn University & Committee Chair Craig Guyer, Department of Biological Sciences, Auburn University Michael C. Wooten, Department of Biological Sciences, Auburn University Lawrence M. Page, Curator of Fishes, Florida Museum of Natural History Abstract Understanding the evolution of organismal form is a primary concern of comparative biology, and inferring the phylogenetic history of shape change is, therefore, a central concern. Shape is one of the most important and easily measured elements of phenotype, and shape is the result of the interaction of many, if not most, genes. The evolution of morphological traits may be tightly linked to the phylogeny of the group. Thus, it is important to test the phylogenetic dependence of traits to study the relationship between traits and phylogeny. My dissertation research has focused on the study of body shape evolution using geometric morphometrics and the ability of geometric morphometrics to infer or inform phylogeny. For this I have studied shape change in Mystus (Siluriformes: Bagridae) and North American cyprinids. Mystus Scopoli 1771 is a diverse catfish group within Bagridae with small- to medium-sized fishes. Out of the 44 nominal species worldwide, only 30 are considered to be part of Mystus. Mystus is distributed in Turkey, Syria, Iraq, Iran, Afghanistan, Pakistan, India, Nepal, Sri Lanka, Bangladesh, Myanmar, Thailand, Malay Peninsula, Vietnam, Sumatra, Java and Borneo. -
The Journal of the Catfish Study Group
The Journal of the Catfish Study Group How to Breed E very Sp · ec•es of Catfish . p C119 ·ng Asp•doras s sree d' Catfishes Of As· la, Part T Wo d puzz\e . 's "){-wor Aquanst ~nswer S to "" My 1hp toP. eru _ P. art 3 Volume 11 Issue Number 1 February 2010 Honorary Committee for the Catfish Study Group President: Ian Fuller Cat Chat Editor: Keith Jackson vice-President: Dr Peter Burgess edi tor@catfishstudygroup. org [email protected] Print Manager: John Toon Chairman: Bill Hurst [email protected] [email protected] Breeders Award Secretary: vice-Chairman &Treasurer: Mark Waiters Danny Blundell [email protected] [email protected] Publicity Officer: Lee Fearnley Secretary: Adrian Taylor [email protected] [email protected] Show Secretary: Brian Walsh Assistant Secretary: [email protected] Mike O'Sullivan Assistant Show Secretary: [email protected] Ann Blundell Scientific Advisor: Auction Manager: David Barton Professor Isaac Isbrucker Assistant Auction Manager: Membership Secretary: Roy Barton Bob Barnes [email protected] Floor Member: Tony Pickett Website Manager: Allan James we bmaster@catfishstudygroup .org [email protected] Where We Meet: The Group nonnally meets at the Highfield Working Men's Club, 1 Ratcliffe Street, Darwen, Lanes, BB3 2BZ on the third Sunday of each month from 1pm. The exceptions are the December meeting, which is held on the second Sunday at the usual place, and the