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Genetic Variation in Heat Tolerance of the Coral Platygyra Daedalea Offers the Potential for 2 Adaptation to Ocean Warming
bioRxiv preprint doi: https://doi.org/10.1101/2020.10.13.337089; this version posted October 17, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Title: Genetic variation in heat tolerance of the coral Platygyra daedalea offers the potential for 2 adaptation to ocean warming. 3 4 Running head: Genetics of corals’ heat tolerance 5 6 Holland Elder1* 7 Virginia Weis1 8 Jose Montalvo-Proano2,3 9 Veronique J.L Mocellin2 10 Andrew H. Baird3 11 Eli Meyer1, 4 12 Line K. Bay2, 4 13 14 1. Oregon State University, Corvallis, OR, USA. 97331 15 2. Australian Institute of Marine Science, 1526 Cape Cleveland Road, Cape Cleveland 16 4810, Queensland, Australia 17 AIMS@JCU 18 3. ARC Centre of Excellence for Coral Reef Studies, James Cook University, 1 James Cook 19 Dr, Douglas QLD 4814, Australia 20 4. These authors contributed equally 21 22 *corresponding author 23 760-622-9116 24 [email protected] 25 26 Keywords: coral reefs; resilience, heritability, genomic markers, allele frequency change 27 28 Paper type: Primary research article. 29 Global Change Biology 30 bioRxiv preprint doi: https://doi.org/10.1101/2020.10.13.337089; this version posted October 17, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 31 Abstract 32 Reef-building corals are foundational species in coral reef ecosystems and are threatened 33 by many stressors including rising ocean temperatures. -
Evidence from the Polypipapiliotrematinae N
Accepted Manuscript Intermediate host switches drive diversification among the largest trematode family: evidence from the Polypipapiliotrematinae n. subf. (Opecoelidae), par- asites transmitted to butterflyfishes via predation of coral polyps Storm B. Martin, Pierre Sasal, Scott C. Cutmore, Selina Ward, Greta S. Aeby, Thomas H. Cribb PII: S0020-7519(18)30242-X DOI: https://doi.org/10.1016/j.ijpara.2018.09.003 Reference: PARA 4108 To appear in: International Journal for Parasitology Received Date: 14 May 2018 Revised Date: 5 September 2018 Accepted Date: 6 September 2018 Please cite this article as: Martin, S.B., Sasal, P., Cutmore, S.C., Ward, S., Aeby, G.S., Cribb, T.H., Intermediate host switches drive diversification among the largest trematode family: evidence from the Polypipapiliotrematinae n. subf. (Opecoelidae), parasites transmitted to butterflyfishes via predation of coral polyps, International Journal for Parasitology (2018), doi: https://doi.org/10.1016/j.ijpara.2018.09.003 This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain. Intermediate host switches drive diversification among the largest trematode family: evidence from the Polypipapiliotrematinae n. subf. (Opecoelidae), parasites transmitted to butterflyfishes via predation of coral polyps Storm B. Martina,*, Pierre Sasalb,c, Scott C. -
(Symbiodinium) in Scleractinian Corals from Tropical Reefs in Southern Hainan
Journal of Systematics and Evolution 49 (6): 598–605 (2011) doi: 10.1111/j.1759-6831.2011.00161.x Research Article Low genetic diversity of symbiotic dinoflagellates (Symbiodinium) in scleractinian corals from tropical reefs in southern Hainan Island, China 1,2Guo-Wei ZHOU 1,2Hui HUANG∗ 1(Key Laboratory of Marine Bio-resources Sustainable Utilization, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China) 2(Tropical Marine Biological Research Station in Hainan, Chinese Academy of Sciences, Sanya 572000, China) Abstract Endosymbiotic dinoflagellates in the genus Symbiodinium are among the most abundant and important group of photosynthetic protists found in coral reef ecosystems. In order to further characterize this diversity and compare with other regions of the Pacific, samples from 44 species of scleractinian corals representing 20 genera and 9 families, were collected from tropical reefs in southern Hainan Island, China. Denaturing gradient gel electrophoresis fingerprinting of the ribosomal internal transcribed spacer 2 identified 11 genetically distinct Symbiodinium types that have been reported previously. The majority of reef-building coral species (88.6%) harbored only one subcladal type of symbiont, dominated by host-generalist C1 and C3, and was influenced little by the host’s apparent mode of symbiont acquisition. Some species harbored more than one clade of Symbiodinium (clades C, D) concurrently. Although geographically isolated from the rest of the Pacific, the symbiont diversity in southern Hainan Island was relatively low and similar to both the Great Barrier Reef and Hawaii symbiont assemblages (dominated by clade C Symbiodinium). These results indicate that a specialist symbiont is not a prerequisite for existence in remote and isolated areas, but additional work in other geographic regions is necessary to test this idea. -
Metagenomic Analysis Indicates That Stressors Induce Production of Herpes-Like Viruses in the Coral Porites Compressa
Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa Rebecca L. Vega Thurbera,b,1, Katie L. Barotta, Dana Halla, Hong Liua, Beltran Rodriguez-Muellera, Christelle Desnuesa,c, Robert A. Edwardsa,d,e,f, Matthew Haynesa, Florent E. Anglya, Linda Wegleya, and Forest L. Rohwera,e aDepartment of Biology, dComputational Sciences Research Center, and eCenter for Microbial Sciences, San Diego State University, San Diego, CA 92182; bDepartment of Biological Sciences, Florida International University, 3000 North East 151st, North Miami, FL 33181; cUnite´des Rickettsies, Unite Mixte de Recherche, Centre National de la Recherche Scientifique 6020. Faculte´deMe´ decine de la Timone, 13385 Marseille, France; and fMathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL 60439 Communicated by Baruch S. Blumberg, Fox Chase Cancer Center, Philadelphia, PA, September 11, 2008 (received for review April 25, 2008) During the last several decades corals have been in decline and at least established, an increase in viral particles within dinoflagellates has one-third of all coral species are now threatened with extinction. been hypothesized to be responsible for symbiont loss during Coral disease has been a major contributor to this threat, but little is bleaching (25–27). VLPs also have been identified visually on known about the responsible pathogens. To date most research has several species of scleractinian corals, specifically: Acropora muri- focused on bacterial and fungal diseases; however, viruses may also cata, Porites lobata, Porites lutea, and Porites australiensis (28). Based be important for coral health. Using a combination of empirical viral on morphological characteristics, these VLPs belong to several viral metagenomics and real-time PCR, we show that Porites compressa families including: tailed phages, large filamentous, and small corals contain a suite of eukaryotic viruses, many related to the (30–80 nm) to large (Ͼ100 nm) polyhedral viruses (29). -
Supplementary Material
Supplementary Material SM1. Post-Processing of Images for Automated Classification Imagery was collected without artificial light and using a fisheye lens to maximise light capture, therefore each image needed to be processed prior annotation in order to balance colour and to minimise the non-linear distortion introduced by the fisheye lens (Figure S1). Initially, colour balance and lenses distortion correction were manually applied on the raw images using Photoshop (Adobe Systems, California, USA). However, in order to optimize the manual post-processing time of thousands of images, more recent images from the Indian Ocean and Pacific Ocean were post- processed using compressed images (jpeg format) and an automatic batch processing in Photoshop and ImageMagick, the latter an open-source software for image processing (www.imagemagick.org). In view of this, the performance of the automated image annotation on images without colour balance was contrasted against images colour balanced using manual post-processing (on raw images) and the automatic batch processing (on jpeg images). For this evaluation, the error metric described in the main text (Materials and Methods) was applied to the images from following regions: the Maldives and the Great Barrier Reef (Figures S2 and S3). We found that the colour balance applied regardless the type of processing (manual vs automatic) had an important beneficial effect on the performance of the automated image annotation as errors were reduced for critical labels in both regions (e.g., Algae labels; Figures S2 and S3). Importantly, no major differences in the performance of the automated annotations were observed between manual and automated adjustments for colour balance. -
Checklist of Fish and Invertebrates Listed in the CITES Appendices
JOINTS NATURE \=^ CONSERVATION COMMITTEE Checklist of fish and mvertebrates Usted in the CITES appendices JNCC REPORT (SSN0963-«OStl JOINT NATURE CONSERVATION COMMITTEE Report distribution Report Number: No. 238 Contract Number/JNCC project number: F7 1-12-332 Date received: 9 June 1995 Report tide: Checklist of fish and invertebrates listed in the CITES appendices Contract tide: Revised Checklists of CITES species database Contractor: World Conservation Monitoring Centre 219 Huntingdon Road, Cambridge, CB3 ODL Comments: A further fish and invertebrate edition in the Checklist series begun by NCC in 1979, revised and brought up to date with current CITES listings Restrictions: Distribution: JNCC report collection 2 copies Nature Conservancy Council for England, HQ, Library 1 copy Scottish Natural Heritage, HQ, Library 1 copy Countryside Council for Wales, HQ, Library 1 copy A T Smail, Copyright Libraries Agent, 100 Euston Road, London, NWl 2HQ 5 copies British Library, Legal Deposit Office, Boston Spa, Wetherby, West Yorkshire, LS23 7BQ 1 copy Chadwick-Healey Ltd, Cambridge Place, Cambridge, CB2 INR 1 copy BIOSIS UK, Garforth House, 54 Michlegate, York, YOl ILF 1 copy CITES Management and Scientific Authorities of EC Member States total 30 copies CITES Authorities, UK Dependencies total 13 copies CITES Secretariat 5 copies CITES Animals Committee chairman 1 copy European Commission DG Xl/D/2 1 copy World Conservation Monitoring Centre 20 copies TRAFFIC International 5 copies Animal Quarantine Station, Heathrow 1 copy Department of the Environment (GWD) 5 copies Foreign & Commonwealth Office (ESED) 1 copy HM Customs & Excise 3 copies M Bradley Taylor (ACPO) 1 copy ^\(\\ Joint Nature Conservation Committee Report No. -
Taxonomic Checklist of CITES Listed Coral Species Part II
CoP16 Doc. 43.1 (Rev. 1) Annex 5.2 (English only / Únicamente en inglés / Seulement en anglais) Taxonomic Checklist of CITES listed Coral Species Part II CORAL SPECIES AND SYNONYMS CURRENTLY RECOGNIZED IN THE UNEP‐WCMC DATABASE 1. Scleractinia families Family Name Accepted Name Species Author Nomenclature Reference Synonyms ACROPORIDAE Acropora abrolhosensis Veron, 1985 Veron (2000) Madrepora crassa Milne Edwards & Haime, 1860; ACROPORIDAE Acropora abrotanoides (Lamarck, 1816) Veron (2000) Madrepora abrotanoides Lamarck, 1816; Acropora mangarevensis Vaughan, 1906 ACROPORIDAE Acropora aculeus (Dana, 1846) Veron (2000) Madrepora aculeus Dana, 1846 Madrepora acuminata Verrill, 1864; Madrepora diffusa ACROPORIDAE Acropora acuminata (Verrill, 1864) Veron (2000) Verrill, 1864; Acropora diffusa (Verrill, 1864); Madrepora nigra Brook, 1892 ACROPORIDAE Acropora akajimensis Veron, 1990 Veron (2000) Madrepora coronata Brook, 1892; Madrepora ACROPORIDAE Acropora anthocercis (Brook, 1893) Veron (2000) anthocercis Brook, 1893 ACROPORIDAE Acropora arabensis Hodgson & Carpenter, 1995 Veron (2000) Madrepora aspera Dana, 1846; Acropora cribripora (Dana, 1846); Madrepora cribripora Dana, 1846; Acropora manni (Quelch, 1886); Madrepora manni ACROPORIDAE Acropora aspera (Dana, 1846) Veron (2000) Quelch, 1886; Acropora hebes (Dana, 1846); Madrepora hebes Dana, 1846; Acropora yaeyamaensis Eguchi & Shirai, 1977 ACROPORIDAE Acropora austera (Dana, 1846) Veron (2000) Madrepora austera Dana, 1846 ACROPORIDAE Acropora awi Wallace & Wolstenholme, 1998 Veron (2000) ACROPORIDAE Acropora azurea Veron & Wallace, 1984 Veron (2000) ACROPORIDAE Acropora batunai Wallace, 1997 Veron (2000) ACROPORIDAE Acropora bifurcata Nemenzo, 1971 Veron (2000) ACROPORIDAE Acropora branchi Riegl, 1995 Veron (2000) Madrepora brueggemanni Brook, 1891; Isopora ACROPORIDAE Acropora brueggemanni (Brook, 1891) Veron (2000) brueggemanni (Brook, 1891) ACROPORIDAE Acropora bushyensis Veron & Wallace, 1984 Veron (2000) Acropora fasciculare Latypov, 1992 ACROPORIDAE Acropora cardenae Wells, 1985 Veron (2000) CoP16 Doc. -
Pseudosiderastrea Formosa Sp. Nov. (Cnidaria: Anthozoa: Scleractinia)
Zoological Studies 51(1): 93-98 (2012) Pseudosiderastrea formosa sp. nov. (Cnidaria: Anthozoa: Scleractinia) a New Coral Species Endemic to Taiwan Michel Pichon1, Yao-Yang Chuang2,3, and Chaolun Allen Chen2,3,4,* 1Museum of Tropical Queensland, 70-102 Flinders Street, Townsville 4810, Australia 2Biodiversity Research Center, Academia Sinica, Nangang, Taipei 115, Taiwan 3Institute of Oceanography, National Taiwan Univ., Taipei 106, Taiwan 4Institute of Life Science, National Taitung Univ., Taitung 904, Taiwan (Accepted September 1, 2011) Michel Pichon, Yao-Yang Chuang, and Chaolun Allen Chen (2012) Pseudosiderastrea formosa sp. nov. (Cnidaria: Anthozoa: Scleractinia) a new coral species endemic to Taiwan. Zoological Studies 51(1): 93-98. Pseudosiderastrea formosa sp. nov. is a new siderastreid scleractinian coral collected in several localities in Taiwan. It lives on rocky substrates where it forms encrusting colonies. Results of morphological observations and molecular genetic analyses are presented. The new species is described and compared to P. tayamai and Siderastrea savignyana, and its morphological and phylogenic affinities are discussed. http://zoolstud.sinica.edu.tw/Journals/51.1/93.pdf Key words: Pseudosiderastrea formosa sp. nov., New species, Scleractinia, Siderastreid, Western Pacific Ocean. A siderastreid scleractinian coral was Pseudosiderastrea, described as P. formosa sp. collected from several localities around Taiwan nov. and nearby islands, where it is relatively rare. The specimens present some morphological similarities with Pseudosiderastrea tayamai Yabe MATERIAL AND METHODS and Sugiyama, 1935, the only species hitherto known from that genus, and with Siderastrea Specimens were collected by scuba diving at savignyana Milne Edwards and Haime, 1849, Wanlitung (21°59'48"N, 120°42'10"E) and the outlet which is the sole representative in the Indian of the 3rd nuclear power plant (21°55'51.38"N, Ocean of the genus Siderastrea de Blainville, 120°44'46.82"E) on the southeastern coast 1830. -
Guide to Some Harvested Aquarium Corals Version 1.3
Guide to some harvested aquarium corals Version 1.3 ( )1 Large septal Guide to some harvested aquarium teeth corals Version 1.3 Septa Authors Morgan Pratchett & Russell Kelley, May 2020 ARC Centre of Excellence for Coral Reef Studies Septa James Cook University Townsville, Queensland 4811 Australia Contents • Overview in life… p3 • Overview of skeletons… p4 • Cynarina lacrymalis p5 • Acanthophyllia deshayesiana p6 • Homophyllia australis p7 • Micromussa pacifica p8 • Unidentified Lobophylliid p9 • Lobophyllia vitiensis p10 • Catalaphyllia jardinei p11 • Trachyphyllia geoffroyi p12 Mouth • Heterocyathus aequicostatus & Heteropsammia cochlea p13 Small • Cycloseris spp. p14 septal • Diaseris spp. p15 teeth • Truncatoflabellum sp. p16 Oral disk Meandering valley Bibliography p17 Acknowledgements FRDC (Project 2014-029) Image support: Russell Kelley, Cairns Marine, Ultra Coral, JEN Veron, Jake Adams, Roberto Arrigioni ( )2 Small septal teeth Guide to some commonly harvested aquarium corals - Version 1.3 Overview in life… SOLID DISKS WITH FLESHY POLYPS AND PROMINENT SEPTAL TEETH Cynarina p5 Acanthophyllia p6 Homophyllia p7 Micromussa p8 Unidentified Lobophylliid p9 5cm disc, 1-2cm deep, large, thick, white 5-10cm disc at top of 10cm curved horn. Tissue 5cm disc, 1-2cm deep. Cycles of septa strongly <5cm disc, 1-2cm deep. Cycles of septa slightly septal teeth usually visible through tissue. In unequal. Large, tall teeth at inner marigns of primary unequal. Teeth of primary septa less large / tall at conceals septa. In Australia usually brown with inner margins. Australia usually translucent green or red. blue / green trim. septa. In Australia traded specimens are typically variegated green / red / orange. 2-3cm disc, 1-2cm deep. Undescribed species traded as Homophyllia australis in West Australia and Northern Territory but now recognised as distinct on genetic and morphological grounds. -
Biological Environmental Survey in Cat Ba Island
Biodiversity International Journal Research Article Open Access Biological environmental survey in Cat Ba Island Abstract Volume 2 Issue 2 - 2018 Cat Ba Island has a significant biodiversity value as it is home to a number of rare and endangered species of plants and animals, with the world’s rarest primates the Golden- Doan Quang Tri,1,2 Tran Hong Thai2 headed Langur. According to the study results, Cat Ba place have listed 2,380 species of 1Ton Duc Thang University, Vietnam animals and plants including: terrestrial plants 741 species; living animals in the forest area 2 Vietnam Meteorological and Hydrological Administration, 282 species; mangrove plants 30 species; seaweeds 79 species; phytoplankton 287 species; Vietnam plank tonic animals 98 species; sea-fish 196 species; corals 154 species. It is identified as one of the areas of highest biodiversity importance in Vietnam and is recognized as a high Correspondence: Doan Quang Tri, Sustainable Management of priority for global conservation. Natural Resources and Environment Research Group, Faculty of Environment and Labour Safety, Ton Duc Thang University, Ho Keywords: mangrove, seagrass, coral reef, phytoplankton, cat ba island Chi Minh City, Vietnam, Email [email protected] Received: December 04, 2017 | Published: March 28, 2018 Introduction the richest marine biological system because of its diversity in the North of Vietnam.3‒7 Biosphere reserves Cat Ba Island has been recognized as a UNESCO World on December 02nd, 2004. It is the 4th world’s biosphere reserve in Vietnam. Biosphere reserves Cat Ba archipelago including great majority of Cat Ba Island in Cat Hai district, Hai Phong city, Vietnam. -
Composition and Ecology of Deep-Water Coral Associations D
HELGOLK---~DER MEERESUNTERSUCHUNGEN Helgoltinder Meeresunters. 36, 183-204 (1983) Composition and ecology of deep-water coral associations D. H. H. Kfihlmann Museum ffir Naturkunde, Humboldt-Universit~t Berlin; Invalidenstr. 43, DDR- 1040 Berlin, German Democratic Republic ABSTRACT: Between 1966 and 1978 SCUBA investigations were carried out in French Polynesia, the Red Sea, and the Caribbean, at depths down to 70 m. Although there are fewer coral species in the Caribbean, the abundance of Scleractinia in deep-water associations below 20 m almost equals that in the Indian and Pacific Oceans. The assemblages of corals living there are described and defined as deep-water coral associations. They are characterized by large, flattened growth forms. Only 6 to 7 % of the species occur exclusively below 20 m. More than 90 % of the corals recorded in deep waters also live in shallow regions. Depth-related illumination is not responsible for depth differentiations of coral associations, but very likely, a complex of mechanical factors, such as hydrodynamic conditions, substrate conditions, sedimentation etc. However, light intensity deter- mines the general distribution of hermatypic Scleractinia in their bathymetric range as well as the platelike shape of coral colonies characteristic for deep water associations. Depending on mechani- cal factors, Leptoseris, Montipora, Porites and Pachyseris dominate as characteristic genera in the Central Pacific Ocean, Podabacia, Leptoseris, Pachyseris and Coscinarea in the Red Sea, Agaricia and Leptoseris in the tropical western Atlantic Ocean. INTRODUCTION Considerable attention has been paid to shallow-water coral associations since the first half of this century (Duerden, 1902; Mayer, 1918; Umbgrove, 1939). Detailed investigations at depths down to 20 m became possible only through the use of autono- mous diving apparatus. -
Poster Presentations Anthropogenic Impacts Interacting Influence of Low
Poster Presentations Anthropogenic Impacts Interacting influence of low salinity and nutrient pulses on the growth of bloom-forming Ulva compressa Guidone, M.; Steele, L. Sacred Heart University, Fairfield, CT 06825. [email protected] For the eastern US, it is predicted that climate change will increase the frequency of severe rainstorms, inundating coastal areas with pulses of freshwater that will reduce salinity but also temparily increase nutrients through sewage overflow and storm runoff. In an effort to predict how this may influence the frequency and severity of macroalgal blooms, this study examined the interacting effect of salinity and nutrient supply on bloom-forming Ulva compressa. In laboratory experiments with constant nutrient supply, U. compressa showed decreased growth at low salinities; however, this decrease was not detectable until the fifth day of treatment. Moreover, U. compressa demonstrated an extraordinary tolerance for freshwater, surviving for 48 hours without nutrients at 0 PSU. When exposed to pulses of freshwater (0 PSU) and varying nutrient levels (none, low, high) lasting either 0.5, 4, or 8 hours, U. compressa growth was negatively impacted in the treatment without nutrients and positively impacted by the low and high nutrient treatments. Furthermore, thalli in the high nutrient treatment showed increased growth with increased pulse time. These findings, combined with observations of U. compressa’s tolerance for high temperatures, suggest Ulva blooms will not decrease in frequency or severity with a change in precipitation patterns. Additional information: a) Faculty b) Poster c) Anthropogenic impacts; Community ecology d) No Long Term Effects of Anthropogenic Influences on Marine Benthic Macrofauna Adjacent to McMurdo Station, Antarctica Smith, S.1; Montagna, P.; Palmer, T.; Hyde, L.