The Past Students of Mycetozoa and Their Work
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Protozoologica Special Issue: Protists in Soil Processes
Acta Protozool. (2012) 51: 201–208 http://www.eko.uj.edu.pl/ap ActA doi:10.4467/16890027AP.12.016.0762 Protozoologica Special issue: Protists in Soil Processes Review paper Ecology of Soil Eumycetozoans Steven L. STEPHENSON1 and Alan FEEST2 1Department of Biological Sciences, University of Arkansas, Fayetteville, Arkansas, USA; 2Institute of Advanced Studies, University of Bristol and Ecosulis ltd., Newton St Loe, Bath, United Kingdom Abstract. Eumycetozoans, commonly referred to as slime moulds, are common to abundant organisms in soils. Three groups of slime moulds (myxogastrids, dictyostelids and protostelids) are recognized, and the first two of these are among the most important bacterivores in the soil microhabitat. The purpose of this paper is first to provide a brief description of all three groups and then to review what is known about their distribution and ecology in soils. Key words: Amoebae, bacterivores, dictyostelids, myxogastrids, protostelids. INTRODUCTION that they are amoebozoans and not fungi (Bapteste et al. 2002, Yoon et al. 2008, Baudalf 2008). Three groups of slime moulds (myxogastrids, dic- One of the idiosyncratic branches of the eukary- tyostelids and protostelids) are recognized (Olive 1970, otic tree of life consists of an assemblage of amoe- 1975). Members of the three groups exhibit consider- boid protists referred to as the supergroup Amoebozoa able diversity in the type of aerial spore-bearing struc- (Fiore-Donno et al. 2010). The most diverse members tures produced, which can range from exceedingly of the Amoebozoa are the eumycetozoans, common- small examples (most protostelids) with only a single ly referred to as slime moulds. Since their discovery, spore to the very largest examples (certain myxogas- slime moulds have been variously classified as plants, trids) that contain many millions of spores. -
A Novel Structure Learning Algorithm for Bayesian Networks Inspired by Physarum Polycephalum
Physarum Learner: A Novel Structure Learning Algorithm for Bayesian Networks inspired by Physarum Polycephalum DISSERTATION ZUR ERLANGUNG DES DOKTORGRADES DER NATURWISSENSCHAFTEN (DR. RER. NAT.) DER FAKULTAT¨ FUR¨ BIOLOGIE UND VORKLINISCHE MEDIZIN DER UNIVERSITAT¨ REGENSBURG vorgelegt von Torsten Schon¨ aus Wassertrudingen¨ im Jahr 2013 Der Promotionsgesuch wurde eingereicht am: 21.05.2013 Die Arbeit wurde angeleitet von: Prof. Dr. Elmar W. Lang Unterschrift: Torsten Schon¨ ii iii Abstract Two novel algorithms for learning Bayesian network structure from data based on the true slime mold Physarum polycephalum are introduced. The first algorithm called C- PhyL calculates pairwise correlation coefficients in the dataset. Within an initially fully connected Physarum-Maze, the length of the connections is given by the inverse correla- tion coefficient between the connected nodes. Then, the shortest indirect path between each two nodes is determined using the Physarum Solver. In each iteration, a score of the surviving edges is increased. Based on that score, the highest ranked connections are combined to form a Bayesian network. The novel C-PhyL method is evaluated with different configurations and compared to the LAGD Hill Climber, Tabu Search and Simu- lated Annealing on a set of artificially generated and real benchmark networks of different characteristics, showing comparable performance regarding quality of training results and increased time efficiency for large datasets. The second novel algorithm called SO-PhyL is introduced and shown to be able to out- perform common score based structure learning algorithms for some benchmark datasets. SO-PhyL first initializes a fully connected Physarum-Maze with constant length and ran- dom conductivities. In each Physarum Solver iteration, the source and sink nodes are changed randomly and the conductivities are updated. -
A Revised Classification of Naked Lobose Amoebae (Amoebozoa
Protist, Vol. 162, 545–570, October 2011 http://www.elsevier.de/protis Published online date 28 July 2011 PROTIST NEWS A Revised Classification of Naked Lobose Amoebae (Amoebozoa: Lobosa) Introduction together constitute the amoebozoan subphy- lum Lobosa, which never have cilia or flagella, Molecular evidence and an associated reevaluation whereas Variosea (as here revised) together with of morphology have recently considerably revised Mycetozoa and Archamoebea are now grouped our views on relationships among the higher-level as the subphylum Conosa, whose constituent groups of amoebae. First of all, establishing the lineages either have cilia or flagella or have lost phylum Amoebozoa grouped all lobose amoe- them secondarily (Cavalier-Smith 1998, 2009). boid protists, whether naked or testate, aerobic Figure 1 is a schematic tree showing amoebozoan or anaerobic, with the Mycetozoa and Archamoe- relationships deduced from both morphology and bea (Cavalier-Smith 1998), and separated them DNA sequences. from both the heterolobosean amoebae (Page and The first attempt to construct a congruent molec- Blanton 1985), now belonging in the phylum Per- ular and morphological system of Amoebozoa by colozoa - Cavalier-Smith and Nikolaev (2008), and Cavalier-Smith et al. (2004) was limited by the the filose amoebae that belong in other phyla lack of molecular data for many amoeboid taxa, (notably Cercozoa: Bass et al. 2009a; Howe et al. which were therefore classified solely on morpho- 2011). logical evidence. Smirnov et al. (2005) suggested The phylum Amoebozoa consists of naked and another system for naked lobose amoebae only; testate lobose amoebae (e.g. Amoeba, Vannella, this left taxa with no molecular data incertae sedis, Hartmannella, Acanthamoeba, Arcella, Difflugia), which limited its utility. -
Slime Moulds
Queen’s University Biological Station Species List: Slime Molds The current list has been compiled by Richard Aaron, a naturalist and educator from Toronto, who has been running the Fabulous Fall Fungi workshop at QUBS between 2009 and 2019. Dr. Ivy Schoepf, QUBS Research Coordinator, edited the list in 2020 to include full taxonomy and information regarding species’ status using resources from The Natural Heritage Information Centre (April 2018) and The IUCN Red List of Threatened Species (February 2018); iNaturalist and GBIF. Contact Ivy to report any errors, omissions and/or new sightings. Based on the aforementioned criteria we can expect to find a total of 33 species of slime molds (kingdom: Protozoa, phylum: Mycetozoa) present at QUBS. Species are Figure 1. One of the most commonly encountered reported using their full taxonomy; common slime mold at QUBS is the Dog Vomit Slime Mold (Fuligo septica). Slime molds are unique in the way name and status, based on whether the species is that they do not have cell walls. Unlike fungi, they of global or provincial concern (see Table 1 for also phagocytose their food before they digest it. details). All species are considered QUBS Photo courtesy of Mark Conboy. residents unless otherwise stated. Table 1. Status classification reported for the amphibians of QUBS. Global status based on IUCN Red List of Threatened Species rankings. Provincial status based on Ontario Natural Heritage Information Centre SRank. Global Status Provincial Status Extinct (EX) Presumed Extirpated (SX) Extinct in the -
Biodiversity of Plasmodial Slime Moulds (Myxogastria): Measurement and Interpretation
Protistology 1 (4), 161–178 (2000) Protistology August, 2000 Biodiversity of plasmodial slime moulds (Myxogastria): measurement and interpretation Yuri K. Novozhilova, Martin Schnittlerb, InnaV. Zemlianskaiac and Konstantin A. Fefelovd a V.L.Komarov Botanical Institute of the Russian Academy of Sciences, St. Petersburg, Russia, b Fairmont State College, Fairmont, West Virginia, U.S.A., c Volgograd Medical Academy, Department of Pharmacology and Botany, Volgograd, Russia, d Ural State University, Department of Botany, Yekaterinburg, Russia Summary For myxomycetes the understanding of their diversity and of their ecological function remains underdeveloped. Various problems in recording myxomycetes and analysis of their diversity are discussed by the examples taken from tundra, boreal, and arid areas of Russia and Kazakhstan. Recent advances in inventory of some regions of these areas are summarised. A rapid technique of moist chamber cultures can be used to obtain quantitative estimates of myxomycete species diversity and species abundance. Substrate sampling and species isolation by the moist chamber technique are indispensable for myxomycete inventory, measurement of species richness, and species abundance. General principles for the analysis of myxomycete diversity are discussed. Key words: slime moulds, Mycetozoa, Myxomycetes, biodiversity, ecology, distribu- tion, habitats Introduction decay (Madelin, 1984). The life cycle of myxomycetes includes two trophic stages: uninucleate myxoflagellates General patterns of community structure of terrestrial or amoebae, and a multi-nucleate plasmodium (Fig. 1). macro-organisms (plants, animals, and macrofungi) are The entire plasmodium turns almost all into fruit bodies, well known. Some mathematics methods are used for their called sporocarps (sporangia, aethalia, pseudoaethalia, or studying, from which the most popular are the quantita- plasmodiocarps). -
La Botanique Dans Un Contexte Local: Les Jardins De Florence À L’Époque Des Grands-Ducs (1569–1859)
Gesnerus 74/1 (2017) 5–52 La botanique dans un contexte local: les jardins de Florence à l’époque des grands-ducs (1569–1859) René Sigrist et Sonia Zanier* Summary This article describes the social and institutional conditions of the practice of botany in early modern Florence. This practice started with the study of medical plants in hospital and university contexts, with the passion of the Medicis for gardens, and the interest of the Vallombrosian monks for cryp- togams. During the XVIIIth century, science of plants focused on classifi cation (morphology), pharmacology (materia medica) and vegetable phy siology, but included also the inventory of Tuscan flora and agronomy. These diverging aims created tensions within the nascent community of botanists, crystallizing around the management of gardens and the choice of classifi cation systems. After 1770, a more scientific approach of botany was made possible by the rise of experimental practices and the development of chem- istry. Yet, a true professionalization of research did not occur before the political unification of Italy, when the management of institutions and the recruitment of botanists were assumed by a central Ministry of education, instead of being dependent on princely favors and patrician connections. Keywords: botany, Florence, 18th century, gardens, agronomy * Cette recherche, menée pour l’essentiel à l’Institut des Sciences Sociales de l’Université de Lausanne, a été financée par le Fonds National Suisse de la recherche scientifique, subsides no 100.011_137.579 et 100.011_166.345. Les auteurs tiennent à témoigner leur gratitude envers Emma Spary pour ses suggestions bibliographiques et interprétatives, ainsi que pour ses nombreuses remarques. -
Slime Molds: Biology and Diversity
Glime, J. M. 2019. Slime Molds: Biology and Diversity. Chapt. 3-1. In: Glime, J. M. Bryophyte Ecology. Volume 2. Bryological 3-1-1 Interaction. Ebook sponsored by Michigan Technological University and the International Association of Bryologists. Last updated 18 July 2020 and available at <https://digitalcommons.mtu.edu/bryophyte-ecology/>. CHAPTER 3-1 SLIME MOLDS: BIOLOGY AND DIVERSITY TABLE OF CONTENTS What are Slime Molds? ....................................................................................................................................... 3-1-2 Identification Difficulties ...................................................................................................................................... 3-1- Reproduction and Colonization ........................................................................................................................... 3-1-5 General Life Cycle ....................................................................................................................................... 3-1-6 Seasonal Changes ......................................................................................................................................... 3-1-7 Environmental Stimuli ............................................................................................................................... 3-1-13 Light .................................................................................................................................................... 3-1-13 pH and Volatile Substances -
The Mycetozoa of North America, Based Upon the Specimens in The
THE MYCETOZOA OF NORTH AMERICA HAGELSTEIN, MYCETOZOA PLATE 1 WOODLAND SCENES IZ THE MYCETOZOA OF NORTH AMERICA BASED UPON THE SPECIMENS IN THE HERBARIUM OF THE NEW YORK BOTANICAL GARDEN BY ROBERT HAGELSTEIN HONORARY CURATOR OF MYXOMYCETES ILLUSTRATED MINEOLA, NEW YORK PUBLISHED BY THE AUTHOR 1944 COPYRIGHT, 1944, BY ROBERT HAGELSTEIN LANCASTER PRESS, INC., LANCASTER, PA. PRINTED IN U. S. A. To (^My CJriend JOSEPH HENRI RISPAUD CONTENTS PAGES Preface 1-2 The Mycetozoa (introduction to life history) .... 3-6 Glossary 7-8 Classification with families and genera 9-12 Descriptions of genera and species 13-271 Conclusion 273-274 Literature cited or consulted 275-289 Index to genera and species 291-299 Explanation of plates 301-306 PLATES Plate 1 (frontispiece) facing title page 2 (colored) facing page 62 3 (colored) facing page 160 4 (colored) facing page 172 5 (colored) facing page 218 Plates 6-16 (half-tone) at end ^^^56^^^ f^^ PREFACE In the Herbarium of the New York Botanical Garden are the large private collections of Mycetozoa made by the late J. B. Ellis, and the late Dr. W. C. Sturgis. These include many speci- mens collected by the earlier American students, Bilgram, Farlow, Fullmer, Harkness, Harvey, Langlois, Macbride, Morgan, Peck, Ravenel, Rex, Thaxter, Wingate, and others. There is much type and authentic material. There are also several thousand specimens received from later collectors, and found in many parts of the world. During the past twenty years my associates and I have collected and studied in the field more than ten thousand developments in eastern North America. -
Physarum Polycephalum (Plasmodial Slime Mold)
Physarum polycephalum (plasmodial slime mold) Species: polycephalum Genus: Physarum Family: Physaraceae Order: Physarales Class: Myxomycetes Phylum: Mycetozoa Kingdom: Amoebozoa Conditions for Customer Ownership We hold permits allowing us to transport these organisms. To access permit conditions, click here. Never purchase living specimens without having a disposition strategy in place. There are currently no USDA permits required for this organism. In order to protect our environment, never release a live laboratory organism into the wild. Primary Hazard Considerations Always wash your hands thoroughly before and after you handle your cultures, or anything it has touched. It is recommended to use gloves when working with mold, fungus, or bacteria. Availability Physarum is available year round. Care Habitat • Plasmodial stage are shipped in a Petri dish on Physarum agar with oats. Your Physarum should be bright yellow in color, and fan shaped. If your Physarum takes on a different appearance it may be contaminated. Contaminated cultures occur when a foreign specimen (something other than Physarum) makes its way onto your culture. This culture should be stored at room temperature in a dark place. The culture should be viable for about 1–2 weeks in its current container. • Sclerotia are hardened masses of irregular form consisting of many minute cell-like components. These are shipped on cut strips of filter paper in a tube. The culture should be stored at room temperature and can be stored in this stage for several months. Care: • Physarum is subcultured onto Physarum agar, and is incubated at room temperature or 25 °C. To maintain viability, plasmodial Physarum should be subcultured weekly. -
1 the SOCIETY LIBRARY CATALOGUE the BMS Council
THE SOCIETY LIBRARY CATALOGUE The BMS Council agreed, many years ago, to expand the Society's collection of books and develop it into a Library, in order to make it freely available to members. The books were originally housed at the (then) Commonwealth Mycological Institute and from 1990 - 2006 at the Herbarium, then in the Jodrell Laboratory,Royal Botanic Gardens Kew, by invitation of the Keeper. The Library now comprises over 1100 items. Development of the Library has depended largely on the generosity of members. Many offers of books and monographs, particularly important taxonomic works, and gifts of money to purchase items, are gratefully acknowledged. The rules for the loan of books are as follows: Books may be borrowed at the discretion of the Librarian and requests should be made, preferably by post or e-mail and stating whether a BMS member, to: The Librarian, British Mycological Society, Jodrell Laboratory Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AB Email: <[email protected]> No more than two volumes may be borrowed at one time, for a period of up to one month, by which time books must be returned or the loan renewed. The borrower will be held liable for the cost of replacement of books that are lost or not returned. BMS Members do not have to pay postage for the outward journey. For the return journey, books must be returned securely packed and postage paid. Non-members may be able to borrow books at the discretion of the Librarian, but all postage costs must be paid by the borrower. -
Vita: OR Anderson
CURRICULUM VITA O. Roger Anderson [Updated May 2020] BIRTH DATE: August 4, 1937 OCCUPATION: Microbial Physiological Ecologist, Biologist, and Educator PROFESSIONAL RANK: Professor of Natural Sciences, Columbia University T. C., 1964-present Teachers College ; Department Chairman, 1974-1980, 1993-1996, 2000-2017 Senior Research Scientist (Adj.), Biology, 1967-present Lamont-Doherty Earth Observatory of Columbia University Faculty Member at Large, Columbia University Graduate School of Arts and Sciences. 1993-present DEGREES: Bachelor of Arts (Botany) Washington University, St. Louis 1959 Master of Arts (Biological Education) Washington University 1961 Doctorate (Biology and Education) Washington University 1964 PROFESSIONAL EXPERIENCE (TEACHING): 1963-64 Washington University, St. Louis 1964-67 Assistant Professor of Natural Sciences Columbia University, Teachers College 1968-70 Associate Professor of Natural Sciences Columbia University, Teachers College 1971- Professor of Natural Sciences Columbia University, Teachers College 1992-1993 College Research Coordinator, Teachers College. 1993-1996 Associate Director, Division of Instruction, T. C. OFFICES IN NATIONAL AND INTERNATIONAL ORGANIZATIONS: 1976 President, National Association for Res. Science Teaching (International) 1993-95 President, Columbia University Chapter Sigma Xi Honorary Scientific Society (National) 1995 President, International Society of Protistology (International) ---------------------------------------------------------------------------------------------------- -
Downloaded from Brill.Com10/02/2021 12:40:43AM Via Free Access 206 René Sigrist Plants
ON SOME SOCIAL CHARACTERISTICS OF THE EIGHTEENTH-CENTURY BOTANISTS René Sigrist* In the eighteenth century, the systematic study of plants was already an old story that could be traced back to the Renaissance and even to clas- sical antiquity. Yet the existence of botany as a science independent of medicine was not as old. It would be difficult to ascertain to what extent it was already a discipline practised by specialized scholars—not to men- tion professionals.1 In 1751 Linné, in his Philosophia botanica, had tried to define the aims and the ideal organisation of such a discipline. Yet, despite the many students who came to hear him in Uppsala, and his eminent position within the Republic of Letters, it was not in his power to impose professional standards on other botanists. Diverging concep- tions of the science of plants persisted at least until the final triumph of Jussieu’s natural method of classification, in the early nineteenth century. The emergence of the professional botanist would be a still longer pro- cess, with important differences from one country to another. The pres- ent article aims to analyse the social status of botanists in the eighteenth century and in the early nineteenth century, a period which can be char- acterised as the golden age of scientific academies.2 Starting with Linné’s conception of the division of tasks within the community of phytologues, it focuses on the social perception of botanists, on the structure of episto- lary links within the Republic of Botanists, and finally on the professional activities and social origins of the major contributors to the science of * Invited scholar (FWO Fellow) at Gent University, Department of Philosophy and Moral Sciences.