Identifying hybridization and admixture using SNPs: rsos.royalsocietypublishing.org application of the DArTseq Research platforminphylogeographic Cite this article: Melville J, Haines ML, research on vertebrates Boysen K, Hodkinson L, Kilian A, Smith Date KL, Potvin DA, Parris KM. 2017 Identifying Jane Melville1, Margaret L. Haines1,†, Katja Boysen1, hybridization and admixture using SNPs: application of the DArTseq platform in Luke Hodkinson1, Andrzej Kilian2, Katie L. Smith Date1, phylogeographic research on vertebrates. 1,‡ 3 R. Soc. open sci. 4: 161061. Dominique A. Potvin and Kirsten M. Parris http://dx.doi.org/10.1098/rsos.161061 1Department of Sciences, Museum Victoria, Carlton, Victoria 3052, Australia 2Diversity Arrays Technology, University of Canberra, Bruce, Australian Capital Territory Received: 19 December 2016 2617, Australia 3 Accepted: 14 June 2017 School of Ecosystem and Forest Sciences, The University of Melbourne, Parkville, Victoria 3010, Australia Subject Category: JM, 0000-0002-9994-6423;DAP,0000-0001-9296-9297 Genetics Next-generation sequencing (NGS) approaches are increasingly Subject Areas: being used to generate multi-locus data for phylogeographic molecular biology/genomics and evolutionary genetics research. We detail the applicability of a restriction enzyme-mediated genome complexity reduction Keywords: approach with subsequent NGS (DArTseq) in vertebrate DArTseq, genomics, hybridization, study systems at different evolutionary and geographical population genetics, phylogeography, SNPs scales. We present two case studies using SNP data from the DArTseq molecular marker platform. First, we used DArTseq in a large phylogeographic study of the agamid Author for correspondence: lizard Ctenophorus caudicinctus, including 91 individuals and Jane Melville spanning the geographical range of this species across e-mail:
[email protected] arid Australia.