A Morphological Study on the Thamnochortus Erectus Complex (Restionaceae)
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Alphabetical Lists of the Vascular Plant Families with Their Phylogenetic
Colligo 2 (1) : 3-10 BOTANIQUE Alphabetical lists of the vascular plant families with their phylogenetic classification numbers Listes alphabétiques des familles de plantes vasculaires avec leurs numéros de classement phylogénétique FRÉDÉRIC DANET* *Mairie de Lyon, Espaces verts, Jardin botanique, Herbier, 69205 Lyon cedex 01, France - [email protected] Citation : Danet F., 2019. Alphabetical lists of the vascular plant families with their phylogenetic classification numbers. Colligo, 2(1) : 3- 10. https://perma.cc/2WFD-A2A7 KEY-WORDS Angiosperms family arrangement Summary: This paper provides, for herbarium cura- Gymnosperms Classification tors, the alphabetical lists of the recognized families Pteridophytes APG system in pteridophytes, gymnosperms and angiosperms Ferns PPG system with their phylogenetic classification numbers. Lycophytes phylogeny Herbarium MOTS-CLÉS Angiospermes rangement des familles Résumé : Cet article produit, pour les conservateurs Gymnospermes Classification d’herbier, les listes alphabétiques des familles recon- Ptéridophytes système APG nues pour les ptéridophytes, les gymnospermes et Fougères système PPG les angiospermes avec leurs numéros de classement Lycophytes phylogénie phylogénétique. Herbier Introduction These alphabetical lists have been established for the systems of A.-L de Jussieu, A.-P. de Can- The organization of herbarium collections con- dolle, Bentham & Hooker, etc. that are still used sists in arranging the specimens logically to in the management of historical herbaria find and reclassify them easily in the appro- whose original classification is voluntarily pre- priate storage units. In the vascular plant col- served. lections, commonly used methods are systema- Recent classification systems based on molecu- tic classification, alphabetical classification, or lar phylogenies have developed, and herbaria combinations of both. -
Plant Life of Western Australia
INTRODUCTION The characteristic features of the vegetation of Australia I. General Physiography At present the animals and plants of Australia are isolated from the rest of the world, except by way of the Torres Straits to New Guinea and southeast Asia. Even here adverse climatic conditions restrict or make it impossible for migration. Over a long period this isolation has meant that even what was common to the floras of the southern Asiatic Archipelago and Australia has become restricted to small areas. This resulted in an ever increasing divergence. As a consequence, Australia is a true island continent, with its own peculiar flora and fauna. As in southern Africa, Australia is largely an extensive plateau, although at a lower elevation. As in Africa too, the plateau increases gradually in height towards the east, culminating in a high ridge from which the land then drops steeply to a narrow coastal plain crossed by short rivers. On the west coast the plateau is only 00-00 m in height but there is usually an abrupt descent to the narrow coastal region. The plateau drops towards the center, and the major rivers flow into this depression. Fed from the high eastern margin of the plateau, these rivers run through low rainfall areas to the sea. While the tropical northern region is characterized by a wet summer and dry win- ter, the actual amount of rain is determined by additional factors. On the mountainous east coast the rainfall is high, while it diminishes with surprising rapidity towards the interior. Thus in New South Wales, the yearly rainfall at the edge of the plateau and the adjacent coast often reaches over 100 cm. -
Vicariance, Climate Change, Anatomy and Phylogeny of Restionaceae
Botanical Journal of the Linnean Society (2000), 134: 159–177. With 12 figures doi:10.1006/bojl.2000.0368, available online at http://www.idealibrary.com on Under the microscope: plant anatomy and systematics. Edited by P. J. Rudall and P. Gasson Vicariance, climate change, anatomy and phylogeny of Restionaceae H. P. LINDER FLS Bolus Herbarium, University of Cape Town, Rondebosch 7701, South Africa Cutler suggested almost 30 years ago that there was convergent evolution between African and Australian Restionaceae in the distinctive culm anatomical features of Restionaceae. This was based on his interpretation of the homologies of the anatomical features, and these are here tested against a ‘supertree’ phylogeny, based on three separate phylogenies. The first is based on morphology and includes all genera; the other two are based on molecular sequences from the chloroplast genome; one covers the African genera, and the other the Australian genera. This analysis corroborates Cutler’s interpretation of convergent evolution between African and Australian Restionaceae. However, it indicates that for the Australian genera, the evolutionary pathway of the culm anatomy is much more complex than originally thought. In the most likely scenario, the ancestral Restionaceae have protective cells derived from the chlorenchyma. These persist in African Restionaceae, but are soon lost in Australian Restionaceae. Pillar cells and sclerenchyma ribs evolve early in the diversification of Australian Restionaceae, but are secondarily lost numerous times. In some of the reduction cases, the result is a very simple culm anatomy, which Cutler had interpreted as a primitively simple culm type, while in other cases it appears as if the functions of the ribs and pillars may have been taken over by a new structure, protective cells developed from epidermal, rather than chlorenchyma, cells. -
Chapter 19 Role of Root Clusters in Phosphorus
CHAPTER 19 ROLE OF ROOT CLUSTERS IN PHOSPHORUS ACQUISITION AND INCREASING BIOLOGICAL DIVERSITY IN AGRICULTURE H. LAMBERS AND M.W. SHANE School of Plant Biology, Faculty of Natural and Agricultural Sciences, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia. E-mail: [email protected] Abstract. Soils in the south-west of Western Australia and South Africa are among the most phosphorus- impoverished in the world, and at the same time both of these regions are Global Biodiversity Hotspots. This unique combination offers an excellent opportunity to study root adaptations that are significant in phosphorus (P) acquisition. A large proportion of species from these P-poor environments cannot produce an association with mycorrhizal fungi, but, instead, produce ‘root clusters’. In Western Australia, root- cluster-bearing Proteaceae occur on the most P-impoverished soils, whereas the mycorrhizal Myrtaceae tend to inhabit the less P-impoverished soils in this region. Root clusters are an adaptation both in structure and in functioning; characterized by high densities of short lateral roots that release large amounts of exudates, in particular carboxylates (anions of di- and tri-carboxylic acids). The functioning of root clusters in Proteaceae (’proteoid’ roots) and Fabaceae (‘cluster’ roots) has received considerable attention, but that of ‘dauciform’ root clusters developed by species in Cyperaceae has barely been explored. Research on the physiology of ‘capillaroid’ root clusters formed by species in Restionaceae has yet to be published. Root-cluster initiation and growth in species of the Cyperaceae, Fabaceae and Proteaceae are systemically stimulated when plants are grown at a very low P supply, and are suppressed as leaf P concentrations increase. -
(Centrolepidaceae) in Australia
J. Adelaide Bot. Gard. 15(1): 1-63 (1992) A TAXONOMIC REVISION OF CENTROLEPIS (CENTROLEPIDACEAE) IN AUSTRALIA D. A. Cooke Animal and Plant Control Commission of South Australia GPO Box 1671, Adelaide, South Australia 5001 Abstract Centrdepis in Australia is revised and twenty species are recognised. This revision is based on morphological features that are discussed in relation to the biology of the genus. One new species, C. curta, and a new subspecies, C. strigosa subsp. rupestris, are described and illustrated. The new combinations C. monogyna subsp. paludicola and C. strigosa subsp. pulvinata are made. Introduction Centrolepis is a genus of small annual and perennial monocots. It forms, with Aphelia and Gaimardia, the minor family Centrolepidaceae. The family has its main centre of diversity in Australia with 29 species; a few occur in New Zealand, south-eastern Asia and South America. The close affinity of the Centrolepidaceae to the Restionaceae, and its remoteness from the two genera segregated by Hamann (1976) as the Hydatellaceae, are widely recognised in contemporary systems of classification (Cronquist, 1981; Dahlgren & Clifford, 1982; Takhtajan, 1980). Taxonomic history The genus first became known from material of the near-coastal species sent to Europe by the early botanist-explorers and collectors. In 1770 Banks and Solander on the Endeavour collected specimens of Centrolepis, now referred to C. banksii and C. exserta, that they tentatively labelled as species of Schoenus (Cyperaceae). Labillardière (1804) based the new genus Centrolepis, which he placed under Monandria Monogynia in the Linnaean system, on a Tasmanian specimen. Robert Brown (1810), using Banks' and Solander's material and his own collections from the voyage of the Investigator around Australia in 1801-4, drafted manuscript epithets for a further twelve Centrolepis species. -
Updated Angiosperm Family Tree for Analyzing Phylogenetic Diversity and Community Structure
Acta Botanica Brasilica - 31(2): 191-198. April-June 2017. doi: 10.1590/0102-33062016abb0306 Updated angiosperm family tree for analyzing phylogenetic diversity and community structure Markus Gastauer1,2* and João Augusto Alves Meira-Neto2 Received: August 19, 2016 Accepted: March 3, 2017 . ABSTRACT Th e computation of phylogenetic diversity and phylogenetic community structure demands an accurately calibrated, high-resolution phylogeny, which refl ects current knowledge regarding diversifi cation within the group of interest. Herein we present the angiosperm phylogeny R20160415.new, which is based on the topology proposed by the Angiosperm Phylogeny Group IV, a recently released compilation of angiosperm diversifi cation. R20160415.new is calibratable by diff erent sets of recently published estimates of mean node ages. Its application for the computation of phylogenetic diversity and/or phylogenetic community structure is straightforward and ensures the inclusion of up-to-date information in user specifi c applications, as long as users are familiar with the pitfalls of such hand- made supertrees. Keywords: angiosperm diversifi cation, APG IV, community tree calibration, megatrees, phylogenetic topology phylogeny comprising the entire taxonomic group under Introduction study (Gastauer & Meira-Neto 2013). Th e constant increase in knowledge about the phylogenetic The phylogenetic structure of a biological community relationships among taxa (e.g., Cox et al. 2014) requires regular determines whether species that coexist within a given revision of applied phylogenies in order to incorporate novel data community are more closely related than expected by chance, and is essential information for investigating and avoid out-dated information in analyses of phylogenetic community assembly rules (Kembel & Hubbell 2006; diversity and community structure. -
Rodents and Restios: Rodents and the Fates of Willdenowia Incurvata (Restionaceae) Seeds
Rodents and Restios: Rodents and the fates of Willdenowia incurvata (Restionaceae) seeds by Benjamin Weighill Thesis presented in fulfilment of the requirements for the degree Masters of Science in Zoology at Stellenbosch University Supervisor : Prof. Bruce Anderson Co- supervisor : Prof. Theresa Wossler Faculty of Science, Department of Botany and Zoology Stellenbosch Univeristy Private Bag X1 Matieland 7600 March 2017 1 Stellenbosch University https://scholar.sun.ac.za Declaration By submitting this thesis electronically, I declare that the entirety of the work contained therein is my own, original work, that I am the sole author thereof (save to the extent explicitly otherwise stated), that reproduction and publication thereof by Stellenbosch University will not infringe any third party rights and that I have not previously in its entirety or in part submitted it for obtaining any qualification. This study forms part of a larger study on rodent assisted seed dispersal in the fynbos which was initiated by Professor Bruce Anderson. The seed tagging method has been used previously by Bruce Anderson and his former student Ursina Rusch. The rest of the study was designed and executed by myself unless otherwise stated. The chapters in this thesis have been prepared for publication, therefore some duplication is unavoidable. Chapter 2: entitled “The nightshift: Seed dispersal and consumption differences by rodents before and after dark” has been submitted and accepted for publishing in the South African Journal of Botany and is included in this thesis with only minor edits. Benjamin Weighill March 2017 Copyright © 2017 Stellenbosch University All rights reserved 2 Stellenbosch University https://scholar.sun.ac.za Abstract The biodiversity hotspot of the fynbos offers a “natural laboratory” to study species diversification, particularly in flowering plants. -
Effects of a Fire Response Trait on Diversification in Replicated Radiations
ORIGINAL ARTICLE doi:10.1111/evo.12273 EFFECTS OF A FIRE RESPONSE TRAIT ON DIVERSIFICATION IN REPLICATED RADIATIONS Glenn Litsios,1,2 Rafael O. Wuest,¨ 3 Anna Kostikova,1,2 Felix´ Forest,4 Christian Lexer,5 H. Peter Linder,6 Peter B. Pearman,3 Niklaus E. Zimmermann,3 and Nicolas Salamin1,2,7 1Department of Ecology and Evolution, Biophore, University of Lausanne, CH-1015 Lausanne, Switzerland 2Swiss Institute of Bioinformatics, Quartier Sorge, CH-1015 Lausanne, Switzerland 3Landscape Dynamics, Swiss Federal Research Institute WSL, CH-8903 Birmensdorf, Switzerland 4Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3DS, United Kingdom 5Unit of Ecology and Evolution, Department of Biology, University of Fribourg, Chemin du Musee´ 10, CH-1700 Fribourg, Switzerland 6Insitute for Systematic Botany, University of Zurich, 8008 Zurich, Switzerland 7E-mail: [email protected] Received May 14, 2013 Accepted September 9, 2013 Fire has been proposed as a factor explaining the exceptional plant species richness found in Mediterranean regions. A fire response trait that allows plants to cope with frequent fire by either reseeding or resprouting could differentially affect rates of species diversification. However, little is known about the generality of the effects of differing fire response on species evolution. We study this question in the Restionaceae, a family that radiated in Southern Africa and Australia. These radiations occurred independently and represent evolutionary replicates. We apply Bayesian approaches to estimate trait-specific diversification rates and patterns of climatic niche evolution. We also compare the climatic heterogeneity of South Africa and Australia. Reseeders diversify faster than resprouters in South Africa, but not in Australia. -
Nuclear Genes, Matk and the Phylogeny of the Poales
Zurich Open Repository and Archive University of Zurich Main Library Strickhofstrasse 39 CH-8057 Zurich www.zora.uzh.ch Year: 2018 Nuclear genes, matK and the phylogeny of the Poales Hochbach, Anne ; Linder, H Peter ; Röser, Martin Abstract: Phylogenetic relationships within the monocot order Poales have been well studied, but sev- eral unrelated questions remain. These include the relationships among the basal families in the order, family delimitations within the restiid clade, and the search for nuclear single-copy gene loci to test the relationships based on chloroplast loci. To this end two nuclear loci (PhyB, Topo6) were explored both at the ordinal level, and within the Bromeliaceae and the restiid clade. First, a plastid reference tree was inferred based on matK, using 140 taxa covering all APG IV families of Poales, and analyzed using parsimony, maximum likelihood and Bayesian methods. The trees inferred from matK closely approach the published phylogeny based on whole-plastome sequencing. Of the two nuclear loci, Topo6 supported a congruent, but much less resolved phylogeny. By contrast, PhyB indicated different phylo- genetic relationships, with, inter alia, Mayacaceae and Typhaceae sister to Poaceae, and Flagellariaceae in a basally branching position within the Poales. Within the restiid clade the differences between the three markers appear less serious. The Anarthria clade is first diverging in all analyses, followed by Restionoideae, Sporadanthoideae, Centrolepidoideae and Leptocarpoideae in the matK and Topo6 data, but in the PhyB data Centrolepidoideae diverges next, followed by a paraphyletic Restionoideae with a clade consisting of the monophyletic Sporadanthoideae and Leptocarpoideae nested within them. The Bromeliaceae phylogeny obtained from Topo6 is insufficiently sampled to make reliable statements, but indicates a good starting point for further investigations. -
Leptocarpus (Restionaceae) Enlarged to Include Meeboldina and Stenotalis, with New Subgenera and Western Australian Species
Volume 16: 19–41 ELOPEA Publication date: 9 April 2014 T dx.doi.org/10.7751/telopea20147400 Journal of Plant Systematics plantnet.rbgsyd.nsw.gov.au/Telopea • escholarship.usyd.edu.au/journals/index.php/TEL • ISSN 0312-9764 (Print) • ISSN 2200-4025 (Online) Leptocarpus (Restionaceae) enlarged to include Meeboldina and Stenotalis, with new subgenera and Western Australian species Barbara G. Briggs National Herbarium of New South Wales, Botanic Gardens Trust Sydney, Mrs Macquaries Road, Sydney NSW 2000, Australia. [email protected] Abstract A recent phylogeny of the restiid clade of Poales based on DNA data from the chloroplast genome indicates that several currently recognised genera of Leptocarpoideae are paraphyletic or polyphyletic. Morphology and DNA data both indicate that the species included in Meeboldina consist of two groups. Moreover, Leptocarpus and the monotypic Stenotalis both appear embedded in Meeboldina, as the latter has been recognised in recent classifications. Consequently, Leptocarpus is here enlarged to encompass Meeboldina and Stenotalis and new subgenera Leptocarpus, Meeboldina and Stenotalis are recognised. The new combination Leptocarpus denmarkicus (Suess.) B.G.Briggs [previously Meeboldina denmarkica Suess.] is provided and the new epithet and combination Leptocarpus scoparius B.G.Briggs [previously Stenotalis ramosissima (Gilg) B.G.Briggs & L.A.S.Johnson, basionym Hypolaena ramosissima Gilg, non Leptocarpus ramosissimus Pillans]. Eight new species from the south of Western Australia are described: L. crebriculmis, L. decipiens, L. depilatus, L. elegans, L. kraussii, L. roycei, L. tephrinus and L. thysananthus. Introduction In classifying the non-African Restionaceae, Briggs and Johnson (1998a, 1998b, 1999) described a number of new genera to accommodate distinctive groups. -
Monocot Fossils Suitable for Molecular Dating Analyses
bs_bs_banner Botanical Journal of the Linnean Society, 2015, 178, 346–374. With 1 figure INVITED REVIEW Monocot fossils suitable for molecular dating analyses WILLIAM J. D. ILES1,2*, SELENA Y. SMITH3, MARIA A. GANDOLFO4 and SEAN W. GRAHAM1 1Department of Botany, University of British Columbia, 3529-6270 University Blvd, Vancouver, BC, Canada V6T 1Z4 2University and Jepson Herbaria, University of California, Berkeley, 3101 Valley Life Sciences Bldg, Berkeley, CA 94720-3070, USA 3Department of Earth & Environmental Sciences and Museum of Paleontology, University of Michigan, 2534 CC Little Bldg, 1100 North University Ave., Ann Arbor, MI 48109-1005, USA 4LH Bailey Hortorium, Plant Biology Section, School of Integrative Plant Science, Cornell University, 410 Mann Library Bldg, Ithaca, NY 14853, USA Received 6 June 2014; revised 3 October 2014; accepted for publication 7 October 2014 Recent re-examinations and new fossil findings have added significantly to the data available for evaluating the evolutionary history of the monocotyledons. Integrating data from the monocot fossil record with molecular dating techniques has the potential to help us to understand better the timing of important evolutionary events and patterns of diversification and extinction in this major and ancient clade of flowering plants. In general, the oldest well-placed fossils are used to constrain the age of nodes in molecular dating analyses. However, substantial error can be introduced if calibration fossils are not carefully evaluated and selected. Here we propose a set of 34 fossils representing 19 families and eight orders for calibrating the ages of major monocot clades. We selected these fossils because they can be placed in particular clades with confidence and they come from well-dated stratigraphic sequences. -
Chloroplast DNA Inversions and the Origin of the Grass Family (Poaceae) JEFF J
Proc. Natd. Acad. Sci. USA Vol. 89, pp. 7722-7726, August 1992 Plant Biology Chloroplast DNA inversions and the origin of the grass family (Poaceae) JEFF J. DOYLE*, JERROLD I. DAVIS, ROBERT J. SORENG, DAVID GARVIN, AND MARNI J. ANDERSON L. H. Bailey Hortorium, Cornell University, Ithaca, NY 14853 Communicated by David Dilcher, May 26, 1992 ABSTRACT The phylogenetic affinities ofthe grass family grasses and discuss the molecular and phylogenetic implica- (Poaceae) have long been debated. The chloroplast genomes of tions of their taxonomic distribution. at least some grasses have been known to possess three inver- sions relative to the typical gene arrangement found in most flowering plants. We have surveyed for the presence of these MATERIALS AND METHODS inversions in grasses and other monocots by polymerase chain DNA was isolated from small amounts of either fresh leaf reaction amplification with primers constructed from se- tissue or dried herbarium specimens by the method ofDoyle quences flanking the inversion end points. Amplification phe- and Doyle (13). Representatives ofeight ofthe nine monocot notypes diagnostic for the largest inversion (28 kilobase pairs) superorders ofDahlgren et al. (5) (all but Triuridiflorae) were were found in genera representing all grass subfamile, and in surveyed (Table 1). PCR (14) amplification primers were the nongrass families Restionaceae, Ecdeiocoleaceae, and Join- designed against evolutionarily conserved sequences (mostly villeaceae, but not in any other monocots-otably, Flagellar- tRNA genes) flanking the end points of regions involved in iaceae, Anarthriaceae, Cyperaceae, or Juncaceae. This finding each ofthe three grass inversions, using information from the is consistent with one of the two principal views of grass completely sequenced chloroplast genomes of Oryza sativa phylogeny in suggesting that Poaceae and Cyperaceae (sedges) (rice) (11), Nicotiana tabacum (tobacco) (15), and the liver- are not closest relatives.