SPC Beche-De-Mer Information Bulletin #35 – March 2015
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Purification of Glucose 6-Phosphate Dehydrogenase From
MARINE SCIENCE AND TECHNOLOGY BULLETIN VOLUME: 9 ISSUE: 2 DECEMBER 2020 Editor-in-Chief Adem Yavuz Sönmez Kastamonu University, Turkey Co-Editor Semih Kale Çanakkale Onsekiz Mart University, Turkey Section Editors Soner Bilen Kastamonu University, Turkey Ertuğrul Terzi Kastamonu University, Turkey Ali Eslem Kadak Kastamonu University, Turkey Gökhan Arslan Atatürk University, Turkey Statistics Editor Aycan Mutlu Yağanoğlu Atatürk University, Turkey Foreign Language Editor Muhammet Sinan Alpsoy Kastamonu University, Turkey Editorial Board Agus Oman Sudrajat Institut Pertanian Bogor, Indonesia Anca Nicoleta Şuţan University of Piteşti, Romania Antanas Kontautas Klaipeda University, Lithuania Arya Vazirzadeh Shiraz University, Iran Barış Bayraklı Sinop University, Turkey Derya Güroy Yalova University, Turkey Fazıl Şen Yüzüncü Yıl University, Turkey Gouranga Biswas Kakdwip Research Centre of Central Institute, India Hasan Hüseyin Atar Ankara University, Turkey İlhan Altınok Karadeniz Technical University, Turkey Liliana Török Danube Delta National Institute for Research & Development, Romania Mahmut Elp Kastamonu University, Turkey Marina Alexandrovna Sazykina Southern Federal University, Russia Mehmet Gökoğlu Akdeniz University, Turkey Muhammad Naeem Khan University of the Punjab, Pakistan Sajmir Beqiraj University of Tirana, Albania Sefa Acarlı Çanakkale Onsekiz Mart University, Turkey Sitti Zayda B. Halun Mindanao State University, Philippines Sonya Uzunova Institute of Fishing Resources, Bulgaria Süleyman Özdemir Sinop University, Turkey -
Growth, Regeneration, and Damage Repair of Spines of the Slate-Pencil Sea Urchin Heterocentrotus Mammillatus (L.) (Echinodermata: Echinoidea)!
Pacific Science (1988), vol. 42, nos. 3-4 © 1988 by the University of Hawaii Press. All rights reserved Growth, Regeneration, and Damage Repair of Spines of the Slate-Pencil Sea Urchin Heterocentrotus mammillatus (L.) (Echinodermata: Echinoidea)! THOMAS A. EBERT2 ABSTRACT: Spines of sea urchins are appendages that are associated with defense, locomotion, and food gathering. Spines are repaired when damaged, and the dynamics of repair was studied in the slate-pencil sea urchin Hetero centrotus mammillatus to provide insights not only into the processes of healing . but also into the normal growth of spines and the formation of growth lines. Regeneration of spines on tubercles following complete removal of a spine was slow and depended upon the size of the original spine. The maximum amount of regeneration occurred on tubercles with spines of intermediate size (1.6 g), which, on average, developed regenerated spines weighing 0.1, 0.3, and 0.7 g after 4, 8, and 12 months, respectively. Some large tubercles, which had original spines weighing over 3 g, failed to develop a new spine even after 8-12 months. Regeneration ofa new tip on a cut stump was more rapid than production of a new spine on a tubercle . Regeneration to original size was more rapid for small spines than for large spines, but large stumps produced more calcite per unit time. In 4 months, a small spine with a removed tip weighing 0.15 g regenerated a new tip weighing 0.09 g, or 63% of its original weight. In the same time, a large spine with 2.35 g of tip removed regenerated 0.40 g of new tip, or 17% of the original weight. -
Promoting Nutritious Food Systems in the Pacific Islands About CTA
Profiling Bioactive Compounds and Key Nutrients in Pacific Island Crops and Marine Resources Promoting Nutritious Food Systems in the Pacific Islands About CTA The Technical Centre for Agricultural and Rural Cooperation (CTA) is a joint international institution of the African, Caribbean and Pacific (ACP) Group of States and the European Union (EU). CTA operates under the framework of the Cotonou Agreement and is funded CMYK LOGO by the EU. For more information on CTA, visit www.cta.int Written by Sunil Singh, The University of the South Pacific (USP), School of Biological and Chemical Sciences, Faculty of Science Technology and Environment Edited by Judith Ann Francis and Jana Dietershagen, CTA Designed by Stéphanie Leroy Disclaimer This work has been made with the financial assistance of the European Union. However, it remains under the sole responsibility of its author(s) and never reflects CTA’s or its co-publisher’s or European Union’s opinions or statements whatsoever nor as well the opinion of any country or State member. The user should make his/her own evaluation as to the appropriateness of any statements, argumentations, experimental technique or method as described in the work. Copyright notice This work is the intellectual property of CTA and its co-publishers. Its dissemination is encouraged for private study, research, teaching, under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/ legalcode), provided that appropriate acknowledgement is made: • of CTA’s copyright, in accordance with the license Creative Commons 4.0, and of EU financing, by including the name of the author, the title of the article and the following notice “© CTA 2018 EU financing”, • and that CTA’s or its co-publishers or EU’s endorsement of authors’ views, products or services is not implied in any way, by including the standard CTA disclaimer. -
Structure Elucidation of Five Novel Isomeric Saponins from the Viscera of the Sea Cucumber Holothuria Lessoni
Mar. Drugs 2014, 12, 4439-4473; doi:10.3390/md12084439 OPEN ACCESS marine drugs ISSN 1660-3397 www.mdpi.com/journal/marinedrugs Article Structure Elucidation of Five Novel Isomeric Saponins from the Viscera of the Sea Cucumber Holothuria lessoni Yadollah Bahrami 1,2,3,4,*, Wei Zhang 1,2,3, Tim Chataway 5 and Chris Franco 1,2,3,* 1 Department of Medical Biotechnology, School of Medicine, Flinders University, Adelaide, SA 5042, Australia; E-Mail: [email protected] 2 Centre for Marine Bioproducts Development, Flinders University, Adelaide, SA 5042, Australia 3 Australian Seafood Cooperative Research Centre, Mark Oliphant Building, Science Park, Adelaide SA 5042, Australia 4 Medical Biology Research Center, Kermanshah University of Medical Sciences, Kermanshah 6714415185, Iran 5 Flinders Proteomics Facility, School of Medicine, Flinders University, Adelaide, SA 5042, Australia; E-Mail: [email protected] * Authors to whom correspondence should be addressed; E-Mails: [email protected] (Y.B.); [email protected] (C.F.); Tel.: +61-872-218-563 (Y.B.); Fax: +61-872-218-555 (Y.B. & C.F.); Tel.: +61-872-218-554 (C.F.). Received: 5 June 2014; in revised form: 25 July 2014 / Accepted: 25 July 2014 / Published: 8 August 2014 Abstract: Sea cucumbers are prolific producers of a wide range of bioactive compounds. This study aimed to purify and characterize one class of compound, the saponins, from the viscera of the Australian sea cucumber Holothuria lessoni. The saponins were obtained by ethanolic extraction of the viscera and enriched by a liquid-liquid partition process and adsorption column chromatography. -
Apostichopus Japonicus
Acta Oceanol. Sin., 2018, Vol. 37, No. 5, P. 54–66 DOI: 10.1007/s13131-017-1101-4 http://www.hyxb.org.cn E-mail: [email protected] Differential gene expression in the body wall of the sea cucumber (Apostichopus japonicus) under strong lighting and dark conditions ZHANG Libin1, 2, FENG Qiming1, 3, SUN Lina1, 2, FANG Yan4, XU Dongxue5, ZHANG Tao1, 2, YANG Hongsheng1, 2* 1 CAS Key laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China 2 Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266071, China 3 University of Chinese Academy of Sciences, Beijing 100049, China 4 School of Agriculture, Ludong University, Yantai 264025, China 5 College of Marine Science and Engineering, Qingdao Agricultural University, Qingdao 266109, China Received 25 January 2017; accepted 9 March 2017 © Chinese Society for Oceanography and Springer-Verlag GmbH Germany, part of Springer Nature 2018 Abstract Sea cucumber, Apostichopus japonicus is very sensitive to light changes. It is important to study the influence of light on the molecular response of A. japonicus. In this study, RNA-seq provided a general overview of the gene expression profiles of the body walls of A. japonicus exposed to strong light (“light”), normal light (“control”) and fully dark (“dark”) environment. In the comparisons of “control” vs. “dark”, ”control” vs. “light” and “dark” vs. “light”, 1 161, 113 and 1 705 differentially expressed genes (DEGs) were identified following the criteria of |log2ratio|≥1 and FDR≤0.001, respectively. Gene ontology analysis showed that “cellular process” and “binding” enriched the most DEGs in the category of “biological process” and “molecular function”, while “cell” and “cell part” enriched the most DEGs in the category of “cellular component”. -
Separation of a Novel Species from Actinopyga Mauritiana
Egypt. J. Aquat. Biol. & Fish., Vol. 20, No. 4: 39 – 45 (2016) ISSN 1110 – 6131 Separation of a novel species from Actinopyga mauritiana (Holothuroidea: Holothuriidae) species complex, based on ecological, morphological and mitochondrial DNA evidence. Mohammed I. Ahmed Marine Science Department, faculty of science, Suez Canal University, Egypt. ABSTRACT Sea cucumbers are a diverse group of echinoderms, approximately more than 1,400 species around the world belonging to six orders and 25 families. In Egypt, sea cucumber is overfished along the Egyptian coast of the Red Sea and in most cases, species are being commercialized without a clear taxonomic identification. Two color morphs of the holothurian Actinopyga mauritiana were found in the Egyptian Red Sea coast and Gulf of Aqaba. Both morphs were found to have different habitats and depth preferences, morphological and molecular examination of both morphs along the Egyptian coast of the Red Sea uncovered new species diversity within the Actinopyga species complex and the discovery of novel species Actinopyga sp. nov. Keywords: Sea cucumber; Actinopyga mauritiana; Red Sea; DNA barcoding; COI INTRODUCTION Actinopyga (Bronn, 1860) is one of the five genera in the family Holothuriidae (Rowe 1969; Rowe & Gates 1995; Massinet al., 2004; Kerr et al 2005; Samyn et al., 2005). Within the genus there are sixteen species generally recognized as valid :Actinopyga agassizii (Selenka, 1867); A. albonigra (Cherbonnier and Féral, 1984); A. bacilla (Cherbonnier, 1980); A. bannwarthi (Panning, 1944); A. caroliniana (Tan Tiu, 1981); A. crassa (Panning, 1944); A. echinites (Jaeger, 1833); A. flammea (Cherbonnier, 1979); A. fusca (Cherbonnier, 1980); A. lecanora(Jaeger, 1833); A. miliaris (Quoy & Gaimard, 1833); A. -
Echinodermata) of Yap, Federated States of Micronesia
Shallow-water holothuroids (Echinodermata) of Yap, Federated States of Micronesia By Sun W. Kim*, Allison K. Miller, Catherine Brunson, Kristin Netchy, Ronald M. Clouse, Daniel Janies, Emmanuel Tardy, and Alexander M. Kerr Abstract In December 2002, July 2007 and December 2009, we surveyed the sea cucumber fauna of the western Caroline Island of Yap (Federated States of Micronesia). We collected 37 species of holothuroids, including 32 species of aspidochirotes and five species of apodans. We found all 13 of the previously reported species and 24 new records for the islands—19 aspidochirotes and five apodans. At least two of the new records appear to be previously undescribed species. Types of microhabitats and reef zonation were closely correlated with the species distributions of Yapese holothuroids.. *Corresponding Author E-mail: [email protected] Pacific Science, vol. 68, no. 3 February, 10, 2014 (Early view) Introduction Coral reefs are among the most biologically diverse marine ecosystems, yet they are threatened by climate change, overexploitation, eutrophication and ocean acidification (Hughes 1994, Reaka-Kudla 1997, Bruno et al. 2009). The currently known 93,000 coral reef associated species are estimated to only represent a small portion of the actual diversity (Reaka- Kudla 1997). In addition, many species have not been seen since their original descriptions, often over a century ago, causing ongoing taxonomic confusion. This taxonomic confusion is not limited to rare species; statuses of even some common species remain in flux. We clearly have much to learn about the alpha diversity of coral reefs (Reaka-Kudla 1997, Bouchet et al. 2002, Michonneau et al. -
Predator Defense Mechanisms in Shallow Water Sea Cucumbers (Holothuroidea)
PREDATOR DEFENSE MECHANISMS IN SHALLOW WATER SEA CUCUMBERS (HOLOTHUROIDEA) JESSICA A. CASTILLO Environmental Science Policy and Management, University of California, Berkeley, California 94720 USA Abstract. The various predator defense mechanisms possessed by shallow water sea cucumbers were surveyed in twelve different species and morphs. While many defense mechanisms such as the presence of Cuverian tubules, toxic secretions, and unpalatability have been identified in holothurians, I hypothesized that the possession of these traits as well as the degree to which they are utilized varies from species to species. The observed defense mechanisms were compared against a previously-derived phylogeny of the sea cucumbers of Moorea. Furthermore, I hypothesized that while the presence of such structures is most likely a result of the species’ placement on a phylogenetic tree, the degree to which they utilize such structures and their physical behavior are influenced by their individual ecologies. The presence of a red liquid secretion was restricted to individuals of the genus Holothuria (Linnaeus 1767) however not all members of the genus exhibited this trait. With the exception of H. leucospilota, which possessed both Cuverian tubules and a red secretion, Cuverian tubules were observed in members of the genus Bohadschia (Ostergren 1896). In accordance with the hypothesis, both the phylogenetics and individual ecology appear to influence predator defense mechanisms. However, even closely related species of similar ecology may differ considerably. Key words: holothurians; defense; toxicity; Cuverian tubules; Moorea, French Polynesia INTRODUCTION (Sakthivel et. Al, 1994). Approximately 20 species in two families and five genera, Sea cucumbers belong to the phylum including Holothuria, Bohadschia, and Thenelota, Echinodermata and the class Holothuroidea. -
Growth and Size of the Tropical Sea Cucumber Holothuria (Halodeima) Atra Jager at Enewetak Atoll, Marshall Islands!
Pacific Science (1978), vol. 32, no. 2 © 1978 by The University Press of Hawaii. All rights reserved Growth and Size of the Tropical Sea Cucumber Holothuria (Halodeima) atra Jager at Enewetak Atoll, Marshall Islands! THOMAS A. EBERT 2 ABSTRACT: In September 1975, 5031 sea cucumbers (Holothuria atra Jager) were tagged with tetracycline and returned to a gutter on the seaward reef bench of Ananij Island, Enewetak Atoll, Marshall Islands. A sample of 184 individuals was collected in September 1976. Animals were dissected and plates of the calcareous ring were examined with ultraviolet radiation for tetracycline lines. Based on 18 tagged individuals, the Brody-Bertalanffy growth constants are: K = 0.11 and P00 = 0.89 cm (for interradial plates). Length (L, cm) and weight (W, g) of individuals are related to plate size: L = 36.35P and W = 1950P3, giving maximum size as 32 cm and 1352 g. Length frequency distributions for the population did not change from 1975 to 1976. A preliminary estimate of annual loss is 50 to 70 percent of the total population based on the growth parameters and population size structure. Holothuria atra shows asexual reproduction by transverse fission, which appears to be the major source of recruitment at Ananij rather than from the plankton. ON MANY TROPICAL REEFS, sea cucumbers are tion to a technique that shows some promise abundant and may attain densities in excess as a means ofstudying growth ofholothurians of 200/m2 (Bakus 1968). But they are very and so, somewhat indirectly, of estimating difficult to study as populations and very few mortality and population turnover. -
BULLETIN of the BRITISH MUSEUM (NATURAL HISTORY) ZOOLOGY Vol
NOTES ON ASTEROIDS IN THE BRITISH MUSEUM (NATURAL HISTORY) V. NARDOA AND SOME OTHER OPHIDIASTERIDS BY AILSA MCGOWN CLARK >c British Museum (Natural History) 6 Plates Pp. 167-198 ; BULLETIN OF THE BRITISH MUSEUM (NATURAL HISTORY) ZOOLOGY Vol. 15 No. 4 LONDON: 1967 THE BULLETIN OF THE BRITISH MUSEUM (NATURAL HISTORY), instituted, in 1949, is issued in five series corresponding to the Departments of the Museum, and an Historical series. Parts will appear at irregular intervals as they become ready. Volumes will contain about three or four hundred pages, and will not necessarily be completed within one calendar year. In 1965 a separate supplementary series of longer papers was instituted, numbered serially for each Department. This paper is Vol. 15, No. 4 of the Zoological series. The abbreviated titles of periodicals cited follow those of the World List of Scientific Periodicals. World List abbreviation : Bull. Br. Mus. not. Hist. (Zool.) Trustees of the British Museum (Natural History) 1967 TRUSTEES OF THE BRITISH MUSEUM (NATURAL HISTORY) Issued 24 February, 1967 Price NOTES ON ASTEROIDS IN THE BRITISH MUSEUM (NATURAL HISTORY) V. NARDOA AND SOME OTHER OPHIDIASTERIDS By AILSA McGOWN CLARK THE present study includes notes on the provenance of Nardoa variolata (Lamarck) the type-species of Nardoa, details of the true holotype of N. gomophia (Perrier), description of a new species from northern Australia and a discussion of the remain- ing species of the genus coupled with notes on the validity of the monotypic Gomo- phia, a new subspecies of which is described. In the course of this, the following conclusions are reached : Ophidiaster watsoni Livingstone (1936) is referred to Gomophia and is probably conspecific with G. -
Profiles and Results from Survey Work at Ha’Atafu, Manuka, Koulo and Lofanga
PACIFIC REGIONAL OCEANIC AND COASTAL FISHERIES DEVELOPMENT PROGRAMME (PROCFish/C/CoFish) TONGA COUNTRY REPORT: PROFILES AND RESULTS FROM SURVEY WORK AT HA’ATAFU, MANUKA, KOULO AND LOFANGA (November and December 2001; March to June 2002; April to June, September and October 2008 ) by Kim Friedman, Silvia Pinca, Mecki Kronen, Pierre Boblin, Lindsay Chapman, Franck Magron, Aliti Vun isea and Pierre Labrosse This document has been produced with the financial assistance of the European Community The views expressed herein are those of the Secretariat of the Pacific Community and do not reflect the official opinion of the European Community i ©Copyright Secretariat of the Pacific Community (SPC), 2009 All rights for commercial / for profit reproduction or translation, in any form, reserved. SPC authorises the partial reproduction or translation of this material for scientific, educational or research purposes, provided SPC and the source document are properly acknowledged. Permission to reproduce the document and/or translate in whole, in any form, whether for commercial / for profit or non-profit purposes, must be requested in writing. Original SPC artwork may not be altered or separately published without permission. Original text: English Secretariat of the Pacific Community Cataloguing-in-publication data Tonga country report: profiles and results from survey work at Ha’atafu, Manuka, Koulo and Lofanga (November and December 2001; March to June 2002; April to June, September and October 2008) / by Kim Friedman, Silvia Pinca, Mecki Kronen, Pierre Boblin, Lindsay Chapman, Franck Magron, Aliti Vunisea and Pierre Labrosse (Pacific Regional Oceanic and Coastal Fisheries Development Programme (PROCFish/C/CoFish) / Secretariat of the Pacific Community) I. -
Biological and Taxonomic Perspective of Triterpenoid Glycosides of Sea Cucumbers of the Family Holothuriidae (Echinodermata, Holothuroidea)
Comparative Biochemistry and Physiology, Part B 180 (2015) 16–39 Contents lists available at ScienceDirect Comparative Biochemistry and Physiology, Part B journal homepage: www.elsevier.com/locate/cbpb Review Biological and taxonomic perspective of triterpenoid glycosides of sea cucumbers of the family Holothuriidae (Echinodermata, Holothuroidea) Magali Honey-Escandón a,⁎, Roberto Arreguín-Espinosa a, Francisco Alonso Solís-Marín b,YvesSamync a Departamento de Química de Biomacromoléculas, Instituto de Química, Universidad Nacional Autónoma de México, Circuito Exterior s/n, Ciudad Universitaria, C.P. 04510 México, D. F., Mexico b Laboratorio de Sistemática y Ecología de Equinodermos, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Apartado Postal 70-350, C.P. 04510 México, D. F., Mexico c Scientific Service of Heritage, Invertebrates Collections, Royal Belgian Institute of Natural Sciences, Vautierstraat 29, B-1000 Brussels, Belgium article info abstract Article history: Since the discovery of saponins in sea cucumbers, more than 150 triterpene glycosides have been described for Received 20 May 2014 the class Holothuroidea. The family Holothuriidae has been increasingly studied in search for these compounds. Received in revised form 18 September 2014 With many species awaiting recognition and formal description this family currently consists of five genera and Accepted 18 September 2014 the systematics at the species-level taxonomy is, however, not yet fully understood. We provide a bibliographic Available online 28 September 2014 review of the triterpene glycosides that has been reported within the Holothuriidae and analyzed the relationship of certain compounds with the presence of Cuvierian tubules. We found 40 species belonging to four genera and Keywords: Cuvierian tubules 121 compounds.