Particle Methods: an Introduction with Applications Pierre Del Moral, Arnaud Doucet
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Conditioning and Markov Properties
Conditioning and Markov properties Anders Rønn-Nielsen Ernst Hansen Department of Mathematical Sciences University of Copenhagen Department of Mathematical Sciences University of Copenhagen Universitetsparken 5 DK-2100 Copenhagen Copyright 2014 Anders Rønn-Nielsen & Ernst Hansen ISBN 978-87-7078-980-6 Contents Preface v 1 Conditional distributions 1 1.1 Markov kernels . 1 1.2 Integration of Markov kernels . 3 1.3 Properties for the integration measure . 6 1.4 Conditional distributions . 10 1.5 Existence of conditional distributions . 16 1.6 Exercises . 23 2 Conditional distributions: Transformations and moments 27 2.1 Transformations of conditional distributions . 27 2.2 Conditional moments . 35 2.3 Exercises . 41 3 Conditional independence 51 3.1 Conditional probabilities given a σ{algebra . 52 3.2 Conditionally independent events . 53 3.3 Conditionally independent σ-algebras . 55 3.4 Shifting information around . 59 3.5 Conditionally independent random variables . 61 3.6 Exercises . 68 4 Markov chains 71 4.1 The fundamental Markov property . 71 4.2 The strong Markov property . 84 4.3 Homogeneity . 90 4.4 An integration formula for a homogeneous Markov chain . 99 4.5 The Chapmann-Kolmogorov equations . 100 iv CONTENTS 4.6 Stationary distributions . 103 4.7 Exercises . 104 5 Ergodic theory for Markov chains on general state spaces 111 5.1 Convergence of transition probabilities . 113 5.2 Transition probabilities with densities . 115 5.3 Asymptotic stability . 117 5.4 Minorisation . 122 5.5 The drift criterion . 127 5.6 Exercises . 131 6 An introduction to Bayesian networks 141 6.1 Introduction . 141 6.2 Directed graphs . -
Superprocesses and Mckean-Vlasov Equations with Creation of Mass
Sup erpro cesses and McKean-Vlasov equations with creation of mass L. Overb eck Department of Statistics, University of California, Berkeley, 367, Evans Hall Berkeley, CA 94720, y U.S.A. Abstract Weak solutions of McKean-Vlasov equations with creation of mass are given in terms of sup erpro cesses. The solutions can b e approxi- mated by a sequence of non-interacting sup erpro cesses or by the mean- eld of multityp e sup erpro cesses with mean- eld interaction. The lat- ter approximation is asso ciated with a propagation of chaos statement for weakly interacting multityp e sup erpro cesses. Running title: Sup erpro cesses and McKean-Vlasov equations . 1 Intro duction Sup erpro cesses are useful in solving nonlinear partial di erential equation of 1+ the typ e f = f , 2 0; 1], cf. [Dy]. Wenowchange the p oint of view and showhowtheyprovide sto chastic solutions of nonlinear partial di erential Supp orted byanFellowship of the Deutsche Forschungsgemeinschaft. y On leave from the Universitat Bonn, Institut fur Angewandte Mathematik, Wegelerstr. 6, 53115 Bonn, Germany. 1 equation of McKean-Vlasovtyp e, i.e. wewant to nd weak solutions of d d 2 X X @ @ @ + d x; + bx; : 1.1 = a x; t i t t t t t ij t @t @x @x @x i j i i=1 i;j =1 d Aweak solution = 2 C [0;T];MIR satis es s Z 2 t X X @ @ a f = f + f + d f + b f ds: s ij s t 0 i s s @x @x @x 0 i j i Equation 1.1 generalizes McKean-Vlasov equations of twodi erenttyp es. -
Kalman and Particle Filtering
Abstract: The Kalman and Particle filters are algorithms that recursively update an estimate of the state and find the innovations driving a stochastic process given a sequence of observations. The Kalman filter accomplishes this goal by linear projections, while the Particle filter does so by a sequential Monte Carlo method. With the state estimates, we can forecast and smooth the stochastic process. With the innovations, we can estimate the parameters of the model. The article discusses how to set a dynamic model in a state-space form, derives the Kalman and Particle filters, and explains how to use them for estimation. Kalman and Particle Filtering The Kalman and Particle filters are algorithms that recursively update an estimate of the state and find the innovations driving a stochastic process given a sequence of observations. The Kalman filter accomplishes this goal by linear projections, while the Particle filter does so by a sequential Monte Carlo method. Since both filters start with a state-space representation of the stochastic processes of interest, section 1 presents the state-space form of a dynamic model. Then, section 2 intro- duces the Kalman filter and section 3 develops the Particle filter. For extended expositions of this material, see Doucet, de Freitas, and Gordon (2001), Durbin and Koopman (2001), and Ljungqvist and Sargent (2004). 1. The state-space representation of a dynamic model A large class of dynamic models can be represented by a state-space form: Xt+1 = ϕ (Xt,Wt+1; γ) (1) Yt = g (Xt,Vt; γ) . (2) This representation handles a stochastic process by finding three objects: a vector that l describes the position of the system (a state, Xt X R ) and two functions, one mapping ∈ ⊂ 1 the state today into the state tomorrow (the transition equation, (1)) and one mapping the state into observables, Yt (the measurement equation, (2)). -
Poisson Processes Stochastic Processes
Poisson Processes Stochastic Processes UC3M Feb. 2012 Exponential random variables A random variable T has exponential distribution with rate λ > 0 if its probability density function can been written as −λt f (t) = λe 1(0;+1)(t) We summarize the above by T ∼ exp(λ): The cumulative distribution function of a exponential random variable is −λt F (t) = P(T ≤ t) = 1 − e 1(0;+1)(t) And the tail, expectation and variance are P(T > t) = e−λt ; E[T ] = λ−1; and Var(T ) = E[T ] = λ−2 The exponential random variable has the lack of memory property P(T > t + sjT > t) = P(T > s) Exponencial races In what follows, T1;:::; Tn are independent r.v., with Ti ∼ exp(λi ). P1: min(T1;:::; Tn) ∼ exp(λ1 + ··· + λn) . P2 λ1 P(T1 < T2) = λ1 + λ2 P3: λi P(Ti = min(T1;:::; Tn)) = λ1 + ··· + λn P4: If λi = λ and Sn = T1 + ··· + Tn ∼ Γ(n; λ). That is, Sn has probability density function (λs)n−1 f (s) = λe−λs 1 (s) Sn (n − 1)! (0;+1) The Poisson Process as a renewal process Let T1; T2;::: be a sequence of i.i.d. nonnegative r.v. (interarrival times). Define the arrival times Sn = T1 + ··· + Tn if n ≥ 1 and S0 = 0: The process N(t) = maxfn : Sn ≤ tg; is called Renewal Process. If the common distribution of the times is the exponential distribution with rate λ then process is called Poisson Process of with rate λ. Lemma. N(t) ∼ Poisson(λt) and N(t + s) − N(s); t ≥ 0; is a Poisson process independent of N(s); t ≥ 0 The Poisson Process as a L´evy Process A stochastic process fX (t); t ≥ 0g is a L´evyProcess if it verifies the following properties: 1. -
A Predictive Model Using the Markov Property
A Predictive Model using the Markov Property Robert A. Murphy, Ph.D. e-mail: [email protected] Abstract: Given a data set of numerical values which are sampled from some unknown probability distribution, we will show how to check if the data set exhibits the Markov property and we will show how to use the Markov property to predict future values from the same distribution, with probability 1. Keywords and phrases: markov property. 1. The Problem 1.1. Problem Statement Given a data set consisting of numerical values which are sampled from some unknown probability distribution, we want to show how to easily check if the data set exhibits the Markov property, which is stated as a sequence of dependent observations from a distribution such that each suc- cessive observation only depends upon the most recent previous one. In doing so, we will present a method for predicting bounds on future values from the same distribution, with probability 1. 1.2. Markov Property Let I R be any subset of the real numbers and let T I consist of times at which a numerical ⊆ ⊆ distribution of data is randomly sampled. Denote the random samples by a sequence of random variables Xt t∈T taking values in R. Fix t T and define T = t T : t>t to be the subset { } 0 ∈ 0 { ∈ 0} of times in T that are greater than t . Let t T . 0 1 ∈ 0 Definition 1 The sequence Xt t∈T is said to exhibit the Markov Property, if there exists a { } measureable function Yt1 such that Xt1 = Yt1 (Xt0 ) (1) for all sequential times t0,t1 T such that t1 T0. -
A Stochastic Processes and Martingales
A Stochastic Processes and Martingales A.1 Stochastic Processes Let I be either IINorIR+.Astochastic process on I with state space E is a family of E-valued random variables X = {Xt : t ∈ I}. We only consider examples where E is a Polish space. Suppose for the moment that I =IR+. A stochastic process is called cadlag if its paths t → Xt are right-continuous (a.s.) and its left limits exist at all points. In this book we assume that every stochastic process is cadlag. We say a process is continuous if its paths are continuous. The above conditions are meant to hold with probability 1 and not to hold pathwise. A.2 Filtration and Stopping Times The information available at time t is expressed by a σ-subalgebra Ft ⊂F.An {F ∈ } increasing family of σ-algebras t : t I is called a filtration.IfI =IR+, F F F we call a filtration right-continuous if t+ := s>t s = t. If not stated otherwise, we assume that all filtrations in this book are right-continuous. In many books it is also assumed that the filtration is complete, i.e., F0 contains all IIP-null sets. We do not assume this here because we want to be able to change the measure in Chapter 4. Because the changed measure and IIP will be singular, it would not be possible to extend the new measure to the whole σ-algebra F. A stochastic process X is called Ft-adapted if Xt is Ft-measurable for all t. If it is clear which filtration is used, we just call the process adapted.The {F X } natural filtration t is the smallest right-continuous filtration such that X is adapted. -
Local Conditioning in Dawson–Watanabe Superprocesses
The Annals of Probability 2013, Vol. 41, No. 1, 385–443 DOI: 10.1214/11-AOP702 c Institute of Mathematical Statistics, 2013 LOCAL CONDITIONING IN DAWSON–WATANABE SUPERPROCESSES By Olav Kallenberg Auburn University Consider a locally finite Dawson–Watanabe superprocess ξ =(ξt) in Rd with d ≥ 2. Our main results include some recursive formulas for the moment measures of ξ, with connections to the uniform Brown- ian tree, a Brownian snake representation of Palm measures, continu- ity properties of conditional moment densities, leading by duality to strongly continuous versions of the multivariate Palm distributions, and a local approximation of ξt by a stationary clusterη ˜ with nice continuity and scaling properties. This all leads up to an asymptotic description of the conditional distribution of ξt for a fixed t> 0, given d that ξt charges the ε-neighborhoods of some points x1,...,xn ∈ R . In the limit as ε → 0, the restrictions to those sets are conditionally in- dependent and given by the pseudo-random measures ξ˜ orη ˜, whereas the contribution to the exterior is given by the Palm distribution of ξt at x1,...,xn. Our proofs are based on the Cox cluster representa- tions of the historical process and involve some delicate estimates of moment densities. 1. Introduction. This paper may be regarded as a continuation of [19], where we considered some local properties of a Dawson–Watanabe super- process (henceforth referred to as a DW-process) at a fixed time t> 0. Recall that a DW-process ξ = (ξt) is a vaguely continuous, measure-valued diffu- d ξtf µvt sion process in R with Laplace functionals Eµe− = e− for suitable functions f 0, where v = (vt) is the unique solution to the evolution equa- 1 ≥ 2 tion v˙ = 2 ∆v v with initial condition v0 = f. -
A Class of Measure-Valued Markov Chains and Bayesian Nonparametrics
Bernoulli 18(3), 2012, 1002–1030 DOI: 10.3150/11-BEJ356 A class of measure-valued Markov chains and Bayesian nonparametrics STEFANO FAVARO1, ALESSANDRA GUGLIELMI2 and STEPHEN G. WALKER3 1Universit`adi Torino and Collegio Carlo Alberto, Dipartimento di Statistica e Matematica Ap- plicata, Corso Unione Sovietica 218/bis, 10134 Torino, Italy. E-mail: [email protected] 2Politecnico di Milano, Dipartimento di Matematica, P.zza Leonardo da Vinci 32, 20133 Milano, Italy. E-mail: [email protected] 3University of Kent, Institute of Mathematics, Statistics and Actuarial Science, Canterbury CT27NZ, UK. E-mail: [email protected] Measure-valued Markov chains have raised interest in Bayesian nonparametrics since the seminal paper by (Math. Proc. Cambridge Philos. Soc. 105 (1989) 579–585) where a Markov chain having the law of the Dirichlet process as unique invariant measure has been introduced. In the present paper, we propose and investigate a new class of measure-valued Markov chains defined via exchangeable sequences of random variables. Asymptotic properties for this new class are derived and applications related to Bayesian nonparametric mixture modeling, and to a generalization of the Markov chain proposed by (Math. Proc. Cambridge Philos. Soc. 105 (1989) 579–585), are discussed. These results and their applications highlight once again the interplay between Bayesian nonparametrics and the theory of measure-valued Markov chains. Keywords: Bayesian nonparametrics; Dirichlet process; exchangeable sequences; linear functionals -
Applying Particle Filtering in Both Aggregated and Age-Structured Population Compartmental Models of Pre-Vaccination Measles
bioRxiv preprint doi: https://doi.org/10.1101/340661; this version posted June 6, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Applying particle filtering in both aggregated and age-structured population compartmental models of pre-vaccination measles Xiaoyan Li1*, Alexander Doroshenko2, Nathaniel D. Osgood1 1 Department of Computer Science, University of Saskatchewan, Saskatoon, Saskatchewan, Canada 2 Department of Medicine, Division of Preventive Medicine, University of Alberta, Edmonton, Alberta, Canada * [email protected] Abstract Measles is a highly transmissible disease and is one of the leading causes of death among young children under 5 globally. While the use of ongoing surveillance data and { recently { dynamic models offer insight on measles dynamics, both suffer notable shortcomings when applied to measles outbreak prediction. In this paper, we apply the Sequential Monte Carlo approach of particle filtering, incorporating reported measles incidence for Saskatchewan during the pre-vaccination era, using an adaptation of a previously contributed measles compartmental model. To secure further insight, we also perform particle filtering on an age structured adaptation of the model in which the population is divided into two interacting age groups { children and adults. The results indicate that, when used with a suitable dynamic model, particle filtering can offer high predictive capacity for measles dynamics and outbreak occurrence in a low vaccination context. We have investigated five particle filtering models in this project. Based on the most competitive model as evaluated by predictive accuracy, we have performed prediction and outbreak classification analysis. -
Introduction to Stochastic Processes - Lecture Notes (With 33 Illustrations)
Introduction to Stochastic Processes - Lecture Notes (with 33 illustrations) Gordan Žitković Department of Mathematics The University of Texas at Austin Contents 1 Probability review 4 1.1 Random variables . 4 1.2 Countable sets . 5 1.3 Discrete random variables . 5 1.4 Expectation . 7 1.5 Events and probability . 8 1.6 Dependence and independence . 9 1.7 Conditional probability . 10 1.8 Examples . 12 2 Mathematica in 15 min 15 2.1 Basic Syntax . 15 2.2 Numerical Approximation . 16 2.3 Expression Manipulation . 16 2.4 Lists and Functions . 17 2.5 Linear Algebra . 19 2.6 Predefined Constants . 20 2.7 Calculus . 20 2.8 Solving Equations . 22 2.9 Graphics . 22 2.10 Probability Distributions and Simulation . 23 2.11 Help Commands . 24 2.12 Common Mistakes . 25 3 Stochastic Processes 26 3.1 The canonical probability space . 27 3.2 Constructing the Random Walk . 28 3.3 Simulation . 29 3.3.1 Random number generation . 29 3.3.2 Simulation of Random Variables . 30 3.4 Monte Carlo Integration . 33 4 The Simple Random Walk 35 4.1 Construction . 35 4.2 The maximum . 36 1 CONTENTS 5 Generating functions 40 5.1 Definition and first properties . 40 5.2 Convolution and moments . 42 5.3 Random sums and Wald’s identity . 44 6 Random walks - advanced methods 48 6.1 Stopping times . 48 6.2 Wald’s identity II . 50 6.3 The distribution of the first hitting time T1 .......................... 52 6.3.1 A recursive formula . 52 6.3.2 Generating-function approach . -
Markov Process Duality
Markov Process Duality Jan M. Swart Luminy, October 23 and 24, 2013 Jan M. Swart Markov Process Duality Markov Chains S finite set. RS space of functions f : S R. ! S For probability kernel P = (P(x; y))x;y2S and f R define left and right multiplication as 2 X X Pf (x) := P(x; y)f (y) and fP(x) := f (y)P(y; x): y y (I do not distinguish row and column vectors.) Def Chain X = (Xk )k≥0 of S-valued r.v.'s is Markov chain with transition kernel P and state space S if S E f (Xk+1) (X0;:::; Xk ) = Pf (Xk ) a:s: (f R ) 2 P (X0;:::; Xk ) = (x0;:::; xk ) , = P[X0 = x0]P(x0; x1) P(xk−1; xk ): ··· µ µ µ Write P ; E for process with initial law µ = P [X0 ]. x δx x 2 · P := P with δx (y) := 1fx=yg. E similar. Jan M. Swart Markov Process Duality Markov Chains Set k µ k x µk := µP (x) = P [Xk = x] and fk := P f (x) = E [f (Xk )]: Then the forward and backward equations read µk+1 = µk P and fk+1 = Pfk : In particular π invariant law iff πP = π. Function h harmonic iff Ph = h h(Xk ) martingale. , Jan M. Swart Markov Process Duality Random mapping representation (Zk )k≥1 i.i.d. with common law ν, take values in (E; ). φ : S E S measurable E × ! P(x; y) = P[φ(x; Z1) = y]: Random mapping representation (E; ; ν; φ) always exists, highly non-unique. -
Lecture 19: Polymer Models: Persistence and Self-Avoidance
Lecture 19: Polymer Models: Persistence and Self-Avoidance Scribe: Allison Ferguson (and Martin Z. Bazant) Martin Fisher School of Physics, Brandeis University April 14, 2005 Polymers are high molecular weight molecules formed by combining a large number of smaller molecules (monomers) in a regular pattern. Polymers in solution (i.e. uncrystallized) can be characterized as long flexible chains, and thus may be well described by random walk models of various complexity. 1 Simple Random Walk (IID Steps) Consider a Rayleigh random walk (i.e. a fixed step size a with a random angle θ). Recall (from Lecture 1) that the probability distribution function (PDF) of finding the walker at position R~ after N steps is given by −3R2 2 ~ e 2a N PN (R) ∼ d (1) (2πa2N/d) 2 Define RN = |R~| as the end-to-end distance of the polymer. Then from previous results we q √ 2 2 ¯ 2 know hRN i = Na and RN = hRN i = a N. We can define an additional quantity, the radius of gyration GN as the radius from the centre of mass (assuming the polymer has an approximately 1 2 spherical shape ). Hughes [1] gives an expression for this quantity in terms of hRN i as follows: 1 1 hG2 i = 1 − hR2 i (2) N 6 N 2 N As an example of the type of prediction which can be made using this type of simple model, consider the following experiment: Pull on both ends of a polymer and measure the force f required to stretch it out2. Note that the force will be given by f = −(∂F/∂R) where F = U − TS is the Helmholtz free energy (T is the temperature, U is the internal energy, and S is the entropy).