Kalman and Particle Filtering
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A Neural Implementation of the Kalman Filter
A Neural Implementation of the Kalman Filter Robert C. Wilson Leif H. Finkel Department of Psychology Department of Bioengineering Princeton University University of Pennsylvania Princeton, NJ 08540 Philadelphia, PA 19103 [email protected] Abstract Recent experimental evidence suggests that the brain is capable of approximating Bayesian inference in the face of noisy input stimuli. Despite this progress, the neural underpinnings of this computation are still poorly understood. In this pa- per we focus on the Bayesian filtering of stochastic time series and introduce a novel neural network, derived from a line attractor architecture, whose dynamics map directly onto those of the Kalman filter in the limit of small prediction error. When the prediction error is large we show that the network responds robustly to changepoints in a way that is qualitatively compatible with the optimal Bayesian model. The model suggests ways in which probability distributions are encoded in the brain and makes a number of testable experimental predictions. 1 Introduction There is a growing body of experimental evidence consistent with the idea that animals are some- how able to represent, manipulate and, ultimately, make decisions based on, probability distribu- tions. While still unproven, this idea has obvious appeal to theorists as a principled way in which to understand neural computation. A key question is how such Bayesian computations could be per- formed by neural networks. Several authors have proposed models addressing aspects of this issue [15, 10, 9, 19, 2, 3, 16, 4, 11, 18, 17, 7, 6, 8], but as yet, there is no conclusive experimental evidence in favour of any one and the question remains open. -
Lecture 19: Wavelet Compression of Time Series and Images
Lecture 19: Wavelet compression of time series and images c Christopher S. Bretherton Winter 2014 Ref: Matlab Wavelet Toolbox help. 19.1 Wavelet compression of a time series The last section of wavelet leleccum notoolbox.m demonstrates the use of wavelet compression on a time series. The idea is to keep the wavelet coefficients of largest amplitude and zero out the small ones. 19.2 Wavelet analysis/compression of an image Wavelet analysis is easily extended to two-dimensional images or datasets (data matrices), by first doing a wavelet transform of each column of the matrix, then transforming each row of the result (see wavelet image). The wavelet coeffi- cient matrix has the highest level (largest-scale) averages in the first rows/columns, then successively smaller detail scales further down the rows/columns. The ex- ample also shows fine results with 50-fold data compression. 19.3 Continuous Wavelet Transform (CWT) Given a continuous signal u(t) and an analyzing wavelet (x), the CWT has the form Z 1 s − t W (λ, t) = λ−1=2 ( )u(s)ds (19.3.1) −∞ λ Here λ, the scale, is a continuous variable. We insist that have mean zero and that its square integrates to 1. The continuous Haar wavelet is defined: 8 < 1 0 < t < 1=2 (t) = −1 1=2 < t < 1 (19.3.2) : 0 otherwise W (λ, t) is proportional to the difference of running means of u over successive intervals of length λ/2. 1 Amath 482/582 Lecture 19 Bretherton - Winter 2014 2 In practice, for a discrete time series, the integral is evaluated as a Riemann sum using the Matlab wavelet toolbox function cwt. -
A Fourier-Wavelet Monte Carlo Method for Fractal Random Fields
JOURNAL OF COMPUTATIONAL PHYSICS 132, 384±408 (1997) ARTICLE NO. CP965647 A Fourier±Wavelet Monte Carlo Method for Fractal Random Fields Frank W. Elliott Jr., David J. Horntrop, and Andrew J. Majda Courant Institute of Mathematical Sciences, 251 Mercer Street, New York, New York 10012 Received August 2, 1996; revised December 23, 1996 2 2H k[v(x) 2 v(y)] l 5 CHux 2 yu , (1.1) A new hierarchical method for the Monte Carlo simulation of random ®elds called the Fourier±wavelet method is developed and where 0 , H , 1 is the Hurst exponent and k?l denotes applied to isotropic Gaussian random ®elds with power law spectral the expected value. density functions. This technique is based upon the orthogonal Here we develop a new Monte Carlo method based upon decomposition of the Fourier stochastic integral representation of the ®eld using wavelets. The Meyer wavelet is used here because a wavelet expansion of the Fourier space representation of its rapid decay properties allow for a very compact representation the fractal random ®elds in (1.1). This method is capable of the ®eld. The Fourier±wavelet method is shown to be straightfor- of generating a velocity ®eld with the Kolmogoroff spec- ward to implement, given the nature of the necessary precomputa- trum (H 5 Ad in (1.1)) over many (10 to 15) decades of tions and the run-time calculations, and yields comparable results scaling behavior comparable to the physical space multi- with scaling behavior over as many decades as the physical space multiwavelet methods developed recently by two of the authors. -
Applying Particle Filtering in Both Aggregated and Age-Structured Population Compartmental Models of Pre-Vaccination Measles
bioRxiv preprint doi: https://doi.org/10.1101/340661; this version posted June 6, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Applying particle filtering in both aggregated and age-structured population compartmental models of pre-vaccination measles Xiaoyan Li1*, Alexander Doroshenko2, Nathaniel D. Osgood1 1 Department of Computer Science, University of Saskatchewan, Saskatoon, Saskatchewan, Canada 2 Department of Medicine, Division of Preventive Medicine, University of Alberta, Edmonton, Alberta, Canada * [email protected] Abstract Measles is a highly transmissible disease and is one of the leading causes of death among young children under 5 globally. While the use of ongoing surveillance data and { recently { dynamic models offer insight on measles dynamics, both suffer notable shortcomings when applied to measles outbreak prediction. In this paper, we apply the Sequential Monte Carlo approach of particle filtering, incorporating reported measles incidence for Saskatchewan during the pre-vaccination era, using an adaptation of a previously contributed measles compartmental model. To secure further insight, we also perform particle filtering on an age structured adaptation of the model in which the population is divided into two interacting age groups { children and adults. The results indicate that, when used with a suitable dynamic model, particle filtering can offer high predictive capacity for measles dynamics and outbreak occurrence in a low vaccination context. We have investigated five particle filtering models in this project. Based on the most competitive model as evaluated by predictive accuracy, we have performed prediction and outbreak classification analysis. -
Alternative Tests for Time Series Dependence Based on Autocorrelation Coefficients
Alternative Tests for Time Series Dependence Based on Autocorrelation Coefficients Richard M. Levich and Rosario C. Rizzo * Current Draft: December 1998 Abstract: When autocorrelation is small, existing statistical techniques may not be powerful enough to reject the hypothesis that a series is free of autocorrelation. We propose two new and simple statistical tests (RHO and PHI) based on the unweighted sum of autocorrelation and partial autocorrelation coefficients. We analyze a set of simulated data to show the higher power of RHO and PHI in comparison to conventional tests for autocorrelation, especially in the presence of small but persistent autocorrelation. We show an application of our tests to data on currency futures to demonstrate their practical use. Finally, we indicate how our methodology could be used for a new class of time series models (the Generalized Autoregressive, or GAR models) that take into account the presence of small but persistent autocorrelation. _______________________________________________________________ An earlier version of this paper was presented at the Symposium on Global Integration and Competition, sponsored by the Center for Japan-U.S. Business and Economic Studies, Stern School of Business, New York University, March 27-28, 1997. We thank Paul Samuelson and the other participants at that conference for useful comments. * Stern School of Business, New York University and Research Department, Bank of Italy, respectively. 1 1. Introduction Economic time series are often characterized by positive -
Time Series: Co-Integration
Time Series: Co-integration Series: Economic Forecasting; Time Series: General; Watson M W 1994 Vector autoregressions and co-integration. Time Series: Nonstationary Distributions and Unit In: Engle R F, McFadden D L (eds.) Handbook of Econo- Roots; Time Series: Seasonal Adjustment metrics Vol. IV. Elsevier, The Netherlands N. H. Chan Bibliography Banerjee A, Dolado J J, Galbraith J W, Hendry D F 1993 Co- Integration, Error Correction, and the Econometric Analysis of Non-stationary Data. Oxford University Press, Oxford, UK Time Series: Cycles Box G E P, Tiao G C 1977 A canonical analysis of multiple time series. Biometrika 64: 355–65 Time series data in economics and other fields of social Chan N H, Tsay R S 1996 On the use of canonical correlation science often exhibit cyclical behavior. For example, analysis in testing common trends. In: Lee J C, Johnson W O, aggregate retail sales are high in November and Zellner A (eds.) Modelling and Prediction: Honoring December and follow a seasonal cycle; voter regis- S. Geisser. Springer-Verlag, New York, pp. 364–77 trations are high before each presidential election and Chan N H, Wei C Z 1988 Limiting distributions of least squares follow an election cycle; and aggregate macro- estimates of unstable autoregressive processes. Annals of Statistics 16: 367–401 economic activity falls into recession every six to eight Engle R F, Granger C W J 1987 Cointegration and error years and follows a business cycle. In spite of this correction: Representation, estimation, and testing. Econo- cyclicality, these series are not perfectly predictable, metrica 55: 251–76 and the cycles are not strictly periodic. -
Lecture 8 the Kalman Filter
EE363 Winter 2008-09 Lecture 8 The Kalman filter • Linear system driven by stochastic process • Statistical steady-state • Linear Gauss-Markov model • Kalman filter • Steady-state Kalman filter 8–1 Linear system driven by stochastic process we consider linear dynamical system xt+1 = Axt + But, with x0 and u0, u1,... random variables we’ll use notation T x¯t = E xt, Σx(t)= E(xt − x¯t)(xt − x¯t) and similarly for u¯t, Σu(t) taking expectation of xt+1 = Axt + But we have x¯t+1 = Ax¯t + Bu¯t i.e., the means propagate by the same linear dynamical system The Kalman filter 8–2 now let’s consider the covariance xt+1 − x¯t+1 = A(xt − x¯t)+ B(ut − u¯t) and so T Σx(t +1) = E (A(xt − x¯t)+ B(ut − u¯t))(A(xt − x¯t)+ B(ut − u¯t)) T T T T = AΣx(t)A + BΣu(t)B + AΣxu(t)B + BΣux(t)A where T T Σxu(t) = Σux(t) = E(xt − x¯t)(ut − u¯t) thus, the covariance Σx(t) satisfies another, Lyapunov-like linear dynamical system, driven by Σxu and Σu The Kalman filter 8–3 consider special case Σxu(t)=0, i.e., x and u are uncorrelated, so we have Lyapunov iteration T T Σx(t +1) = AΣx(t)A + BΣu(t)B , which is stable if and only if A is stable if A is stable and Σu(t) is constant, Σx(t) converges to Σx, called the steady-state covariance, which satisfies Lyapunov equation T T Σx = AΣxA + BΣuB thus, we can calculate the steady-state covariance of x exactly, by solving a Lyapunov equation (useful for starting simulations in statistical steady-state) The Kalman filter 8–4 Example we consider xt+1 = Axt + wt, with 0.6 −0.8 A = , 0.7 0.6 where wt are IID N (0, I) eigenvalues of A are -
Generating Time Series with Diverse and Controllable Characteristics
GRATIS: GeneRAting TIme Series with diverse and controllable characteristics Yanfei Kang,∗ Rob J Hyndman,† and Feng Li‡ Abstract The explosion of time series data in recent years has brought a flourish of new time series analysis methods, for forecasting, clustering, classification and other tasks. The evaluation of these new methods requires either collecting or simulating a diverse set of time series benchmarking data to enable reliable comparisons against alternative approaches. We pro- pose GeneRAting TIme Series with diverse and controllable characteristics, named GRATIS, with the use of mixture autoregressive (MAR) models. We simulate sets of time series using MAR models and investigate the diversity and coverage of the generated time series in a time series feature space. By tuning the parameters of the MAR models, GRATIS is also able to efficiently generate new time series with controllable features. In general, as a costless surrogate to the traditional data collection approach, GRATIS can be used as an evaluation tool for tasks such as time series forecasting and classification. We illustrate the usefulness of our time series generation process through a time series forecasting application. Keywords: Time series features; Time series generation; Mixture autoregressive models; Time series forecasting; Simulation. 1 Introduction With the widespread collection of time series data via scanners, monitors and other automated data collection devices, there has been an explosion of time series analysis methods developed in the past decade or two. Paradoxically, the large datasets are often also relatively homogeneous in the industry domain, which limits their use for evaluation of general time series analysis methods (Keogh and Kasetty, 2003; Mu˜nozet al., 2018; Kang et al., 2017). -
Fourier, Wavelet and Monte Carlo Methods in Computational Finance
Fourier, Wavelet and Monte Carlo Methods in Computational Finance Kees Oosterlee1;2 1CWI, Amsterdam 2Delft University of Technology, the Netherlands AANMPDE-9-16, 7/7/2016 Kees Oosterlee (CWI, TU Delft) Comp. Finance AANMPDE-9-16 1 / 51 Joint work with Fang Fang, Marjon Ruijter, Luis Ortiz, Shashi Jain, Alvaro Leitao, Fei Cong, Qian Feng Agenda Derivatives pricing, Feynman-Kac Theorem Fourier methods Basics of COS method; Basics of SWIFT method; Options with early-exercise features COS method for Bermudan options Monte Carlo method BSDEs, BCOS method (very briefly) Kees Oosterlee (CWI, TU Delft) Comp. Finance AANMPDE-9-16 1 / 51 Agenda Derivatives pricing, Feynman-Kac Theorem Fourier methods Basics of COS method; Basics of SWIFT method; Options with early-exercise features COS method for Bermudan options Monte Carlo method BSDEs, BCOS method (very briefly) Joint work with Fang Fang, Marjon Ruijter, Luis Ortiz, Shashi Jain, Alvaro Leitao, Fei Cong, Qian Feng Kees Oosterlee (CWI, TU Delft) Comp. Finance AANMPDE-9-16 1 / 51 Feynman-Kac theorem: Z T v(t; x) = E g(s; Xs )ds + h(XT ) ; t where Xs is the solution to the FSDE dXs = µ(Xs )ds + σ(Xs )d!s ; Xt = x: Feynman-Kac Theorem The linear partial differential equation: @v(t; x) + Lv(t; x) + g(t; x) = 0; v(T ; x) = h(x); @t with operator 1 Lv(t; x) = µ(x)Dv(t; x) + σ2(x)D2v(t; x): 2 Kees Oosterlee (CWI, TU Delft) Comp. Finance AANMPDE-9-16 2 / 51 Feynman-Kac Theorem The linear partial differential equation: @v(t; x) + Lv(t; x) + g(t; x) = 0; v(T ; x) = h(x); @t with operator 1 Lv(t; x) = µ(x)Dv(t; x) + σ2(x)D2v(t; x): 2 Feynman-Kac theorem: Z T v(t; x) = E g(s; Xs )ds + h(XT ) ; t where Xs is the solution to the FSDE dXs = µ(Xs )ds + σ(Xs )d!s ; Xt = x: Kees Oosterlee (CWI, TU Delft) Comp. -
Efficient Monte Carlo Methods for Estimating Failure Probabilities
Reliability Engineering and System Safety 165 (2017) 376–394 Contents lists available at ScienceDirect Reliability Engineering and System Safety journal homepage: www.elsevier.com/locate/ress ffi E cient Monte Carlo methods for estimating failure probabilities MARK ⁎ Andres Albana, Hardik A. Darjia,b, Atsuki Imamurac, Marvin K. Nakayamac, a Mathematical Sciences Dept., New Jersey Institute of Technology, Newark, NJ 07102, USA b Mechanical Engineering Dept., New Jersey Institute of Technology, Newark, NJ 07102, USA c Computer Science Dept., New Jersey Institute of Technology, Newark, NJ 07102, USA ARTICLE INFO ABSTRACT Keywords: We develop efficient Monte Carlo methods for estimating the failure probability of a system. An example of the Probabilistic safety assessment problem comes from an approach for probabilistic safety assessment of nuclear power plants known as risk- Risk analysis informed safety-margin characterization, but it also arises in other contexts, e.g., structural reliability, Structural reliability catastrophe modeling, and finance. We estimate the failure probability using different combinations of Uncertainty simulation methodologies, including stratified sampling (SS), (replicated) Latin hypercube sampling (LHS), Monte Carlo and conditional Monte Carlo (CMC). We prove theorems establishing that the combination SS+LHS (resp., SS Variance reduction Confidence intervals +CMC+LHS) has smaller asymptotic variance than SS (resp., SS+LHS). We also devise asymptotically valid (as Nuclear regulation the overall sample size grows large) upper confidence bounds for the failure probability for the methods Risk-informed safety-margin characterization considered. The confidence bounds may be employed to perform an asymptotically valid probabilistic safety assessment. We present numerical results demonstrating that the combination SS+CMC+LHS can result in substantial variance reductions compared to stratified sampling alone. -
Dynamic Detection of Change Points in Long Time Series
AISM (2007) 59: 349–366 DOI 10.1007/s10463-006-0053-9 Nicolas Chopin Dynamic detection of change points in long time series Received: 23 March 2005 / Revised: 8 September 2005 / Published online: 17 June 2006 © The Institute of Statistical Mathematics, Tokyo 2006 Abstract We consider the problem of detecting change points (structural changes) in long sequences of data, whether in a sequential fashion or not, and without assuming prior knowledge of the number of these change points. We reformulate this problem as the Bayesian filtering and smoothing of a non standard state space model. Towards this goal, we build a hybrid algorithm that relies on particle filter- ing and Markov chain Monte Carlo ideas. The approach is illustrated by a GARCH change point model. Keywords Change point models · GARCH models · Markov chain Monte Carlo · Particle filter · Sequential Monte Carlo · State state models 1 Introduction The assumption that an observed time series follows the same fixed stationary model over a very long period is rarely realistic. In economic applications for instance, common sense suggests that the behaviour of economic agents may change abruptly under the effect of economic policy, political events, etc. For example, Mikosch and St˘aric˘a (2003, 2004) point out that GARCH models fit very poorly too long sequences of financial data, say 20 years of daily log-returns of some speculative asset. Despite this, these models remain highly popular, thanks to their forecast ability (at least on short to medium-sized time series) and their elegant simplicity (which facilitates economic interpretation). Against the common trend of build- ing more and more sophisticated stationary models that may spuriously provide a better fit for such long sequences, the aforementioned authors argue that GARCH models remain a good ‘local’ approximation of the behaviour of financial data, N. -
Bayesian Filtering: from Kalman Filters to Particle Filters, and Beyond ZHE CHEN
MANUSCRIPT 1 Bayesian Filtering: From Kalman Filters to Particle Filters, and Beyond ZHE CHEN Abstract— In this self-contained survey/review paper, we system- IV Bayesian Optimal Filtering 9 atically investigate the roots of Bayesian filtering as well as its rich IV-AOptimalFiltering..................... 10 leaves in the literature. Stochastic filtering theory is briefly reviewed IV-BKalmanFiltering..................... 11 with emphasis on nonlinear and non-Gaussian filtering. Following IV-COptimumNonlinearFiltering.............. 13 the Bayesian statistics, different Bayesian filtering techniques are de- IV-C.1Finite-dimensionalFilters............ 13 veloped given different scenarios. Under linear quadratic Gaussian circumstance, the celebrated Kalman filter can be derived within the Bayesian framework. Optimal/suboptimal nonlinear filtering tech- V Numerical Approximation Methods 14 niques are extensively investigated. In particular, we focus our at- V-A Gaussian/Laplace Approximation ............ 14 tention on the Bayesian filtering approach based on sequential Monte V-BIterativeQuadrature................... 14 Carlo sampling, the so-called particle filters. Many variants of the V-C Mulitgrid Method and Point-Mass Approximation . 14 particle filter as well as their features (strengths and weaknesses) are V-D Moment Approximation ................. 15 discussed. Related theoretical and practical issues are addressed in V-E Gaussian Sum Approximation . ............. 16 detail. In addition, some other (new) directions on Bayesian filtering V-F Deterministic