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  • Specific Binding of Transposase to Terminal Inverted Repeats Of
    Proc. Natl. Acad. Sci. USA Vol. 84, pp. 8220-8224, December 1987 Biochemistry Specific binding of transposase to terminal inverted repeats of transposable element Tn3 (transposon/DNA binding protein/DNase I "footprinting") HITOSHI ICHIKAWA*, KAORU IKEDA*, WILLIAM L. WISHARTt, AND EIICHI OHTSUBO*t *Institute of Applied Microbiology, University of Tokyo, Bunkyo-ku, Yayoi 1-1-1, Tokyo 113, Japan; and tDepartment of Molecular Biology, Princeton University, Princeton, NJ 08544 Communicated by Norman Davidson, July 27, 1987 ABSTRACT Tn3 transposase, which is required for trans- containing the Tn3 terminal regions when 8 mM ATP is position of Tn3, has been purified by a low-ionic-strength- present (14). precipitation method. Using a nitrocellulose filter binding In this paper, we study the interaction of Tn3 transposase, assay, we have shown that transposase binds to any restriction which has been purified by a low-ionic-strength-precipitation fragment. However, binding of the transposase to specific method, with DNA. We demonstrate that the purified fragments containing the terminal inverted repeat sequences of transposase is an ATP-independent DNA binding protein, Tn3 can be demonstrated by treatment of transposase-DNA which has interesting properties that may be involved in the complexes with heparin, which effectively removes the actual transposition event of Tn3. transposase bound to the other nonspecific fragments at pH 5-6. DNase I "footprinting" analysis showed that the MATERIALS AND METHODS transposase protects an inner 25-base-pair region of the 38- base-pair terminal inverted repeat sequence of Tn3. This Bacterial Strains and Plasmids. The bacterial strains used protection is not dependent on pH.
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