Critically Endangered Polypore Trametes Suaveolens (Basidiomycota) Re-Discovered in Estonia
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Phylogenetic Classification of Trametes
TAXON 60 (6) • December 2011: 1567–1583 Justo & Hibbett • Phylogenetic classification of Trametes SYSTEMATICS AND PHYLOGENY Phylogenetic classification of Trametes (Basidiomycota, Polyporales) based on a five-marker dataset Alfredo Justo & David S. Hibbett Clark University, Biology Department, 950 Main St., Worcester, Massachusetts 01610, U.S.A. Author for correspondence: Alfredo Justo, [email protected] Abstract: The phylogeny of Trametes and related genera was studied using molecular data from ribosomal markers (nLSU, ITS) and protein-coding genes (RPB1, RPB2, TEF1-alpha) and consequences for the taxonomy and nomenclature of this group were considered. Separate datasets with rDNA data only, single datasets for each of the protein-coding genes, and a combined five-marker dataset were analyzed. Molecular analyses recover a strongly supported trametoid clade that includes most of Trametes species (including the type T. suaveolens, the T. versicolor group, and mainly tropical species such as T. maxima and T. cubensis) together with species of Lenzites and Pycnoporus and Coriolopsis polyzona. Our data confirm the positions of Trametes cervina (= Trametopsis cervina) in the phlebioid clade and of Trametes trogii (= Coriolopsis trogii) outside the trametoid clade, closely related to Coriolopsis gallica. The genus Coriolopsis, as currently defined, is polyphyletic, with the type species as part of the trametoid clade and at least two additional lineages occurring in the core polyporoid clade. In view of these results the use of a single generic name (Trametes) for the trametoid clade is considered to be the best taxonomic and nomenclatural option as the morphological concept of Trametes would remain almost unchanged, few new nomenclatural combinations would be necessary, and the classification of additional species (i.e., not yet described and/or sampled for mo- lecular data) in Trametes based on morphological characters alone will still be possible. -
Biocatalytic Potential of Native Basidiomycetes from Colombia for Flavour/Aroma Production
molecules Article Biocatalytic Potential of Native Basidiomycetes from Colombia for Flavour/Aroma Production David A. Jaramillo 1 , María J. Méndez 1 , Gabriela Vargas 1 , Elena E. Stashenko 2 , Aída-M. Vasco-Palacios 3 , Andrés Ceballos 1 and Nelson H. Caicedo 1,* 1 Department of Biochemical Engineering, Universidad Icesi, Calle 18 No. 122–135 Pance, Cali 760031, Colombia; [email protected] (D.A.J.); [email protected] (M.J.M.); [email protected] (G.V.); [email protected] (A.C.) 2 Universidad Industrial de Santander. Chromatography and Mass Spectrometry Center, Calle 9 Carrera 27, Bucaramanga 680002, Colombia; [email protected] 3 Grupo de Microbiología Ambiental—BioMicro, Escuela de Microbiología, Universidad de Antioquia, UdeA, Calle 70 No. 52–21, Medellín 050010, Colombia; [email protected] * Correspondence: [email protected]; Tel.: +573187548041 Academic Editor: Francisco Leon Received: 31 July 2020; Accepted: 15 September 2020; Published: 22 September 2020 Abstract: Aromas and flavours can be produced from fungi by either de novo synthesis or biotransformation processes. Herein, the biocatalytic potential of seven basidiomycete species from Colombia fungal strains isolated as endophytes or basidioma was evaluated. Ganoderma webenarium, Ganoderma chocoense, and Ganoderma stipitatum were the most potent strains capable of decolourizing β,β-carotene as evidence of their potential as biocatalysts for de novo aroma synthesis. Since a species’ biocatalytic potential cannot solely be determined via qualitative screening using β,β-carotene biotransformation processes, we focused on using α-pinene biotransformation with mycelium as a measure of catalytic potential. Here, two strains of Trametes elegans—namely, the endophytic (ET-06) and basidioma (EBB-046) strains—were screened. -
New Data on the Occurence of an Element Both
Analele UniversităĠii din Oradea, Fascicula Biologie Tom. XVI / 2, 2009, pp. 53-59 CONTRIBUTIONS TO THE KNOWLEDGE DIVERSITY OF LIGNICOLOUS MACROMYCETES (BASIDIOMYCETES) FROM CĂ3ĂğÂNII MOUNTAINS Ioana CIORTAN* *,,Alexandru. Buia” Botanical Garden, Craiova, Romania Corresponding author: Ioana Ciortan, ,,Alexandru Buia” Botanical Garden, 26 Constantin Lecca Str., zip code: 200217,Craiova, Romania, tel.: 0040251413820, e-mail: [email protected] Abstract. This paper presents partial results of research conducted between 2005 and 2009 in different forests (beech forests, mixed forests of beech with spruce, pure spruce) in CăSăĠânii Mountains (Romania). 123 species of wood inhabiting Basidiomycetes are reported from the CăSăĠânii Mountains, both saprotrophs and parasites, as identified by various species of trees. Keywords: diversity, macromycetes, Basidiomycetes, ecology, substrate, saprotroph, parasite, lignicolous INTRODUCTION MATERIALS AND METHODS The data presented are part of an extensive study, The research was conducted using transects and which will complete the PhD thesis. The CăSăĠânii setting fixed locations in some vegetable formations, Mountains are a mountain group of the ùureanu- which were visited several times a year beginning with Parâng-Lotru Mountains, belonging to the mountain the months April-May until October-November. chain of the Southern Carpathians. They are situated in Fungi were identified on the basis of both the SE parth of the Parâng Mountain, between OlteĠ morphological and anatomical properties of fruiting River in the west, Olt River in the east, Lotru and bodies and according to specific chemical reactions LaroriĠa Rivers in the north. Our area is 900 Km2 large using the bibliography [1-8, 10-13]. Special (Fig. 1). The vegetation presents typical levers: major presentation was made in phylogenetic order, the associations characteristic of each lever are present in system of classification used was that adopted by Kirk this massif. -
Molecular Phylogeny and Taxonomic Position of Trametes Cervina and Description of a New Genus Trametopsis
CZECH MYCOL. 60(1): 1–11, 2008 Molecular phylogeny and taxonomic position of Trametes cervina and description of a new genus Trametopsis MICHAL TOMŠOVSKÝ Faculty of Forestry and Wood Technology, Mendel University of Agriculture and Forestry in Brno, Zemědělská 3, CZ-613 00, Brno, Czech Republic [email protected] Tomšovský M. (2008): Molecular phylogeny and taxonomic position of Trametes cervina and description of a new genus Trametopsis. – Czech Mycol. 60(1): 1–11. Trametes cervina (Schwein.) Bres. differs from other species of the genus by remarkable morpho- logical characters (shape of pores, hyphal system). Moreover, an earlier published comparison of the DNA sequences within the genus revealed considerable differences between this species and the re- maining European members of the genus Trametes. These results were now confirmed using se- quences of nuclear LSU and mitochondrial SSU regions of ribosomal DNA. The most related species of Trametes cervina are Ceriporiopsis aneirina and C. resinascens. According to these facts, the new genus Trametopsis Tomšovský is described and the new combination Trametopsis cervina (Schwein.) Tomšovský is proposed. Key words: Trametopsis, Trametes, ribosomal DNA, polypore, taxonomy. Tomšovský M. (2008): Molekulární fylogenetika a taxonomické zařazení outkovky jelení, Trametes cervina, a popis nového rodu Trametopsis. – Czech Mycol. 60(1): 1–11. Outkovka jelení, Trametes cervina (Schwein.) Bres., se liší od ostatních zástupců rodu nápadnými morfologickými znaky (tvar rourek, hyfový systém). Také dříve uveřejněné srovnání sekvencí DNA v rámci rodu Trametes odhalilo významné rozdíly mezi tímto druhem a ostatními evropskými zástupci rodu. Uvedené výsledky byly nyní potvrzeny za použití sekvencí jaderné LSU a mitochondriální SSU oblasti ribozomální DNA, přičemž nejpříbuznějšími druhu Trametes cervina jsou Ceriporiopsis anei- rina a C. -
New Records of Polypores from Iran, with a Checklist of Polypores for Gilan Province
CZECH MYCOLOGY 68(2): 139–148, SEPTEMBER 27, 2016 (ONLINE VERSION, ISSN 1805-1421) New records of polypores from Iran, with a checklist of polypores for Gilan Province 1 2 MOHAMMAD AMOOPOUR ,MASOOMEH GHOBAD-NEJHAD *, 1 SEYED AKBAR KHODAPARAST 1 Department of Plant Protection, Faculty of Agricultural Sciences, University of Gilan, P.O. Box 41635-1314, Rasht 4188958643, Iran. 2 Department of Biotechnology, Iranian Research Organization for Science and Technology (IROST), P.O. Box 3353-5111, Tehran 3353136846, Iran; [email protected] *corresponding author Amoopour M., Ghobad-Nejhad M., Khodaparast S.A. (2016): New records of polypores from Iran, with a checklist of polypores for Gilan Province. – Czech Mycol. 68(2): 139–148. As a result of a survey of poroid basidiomycetes in Gilan Province, Antrodiella fragrans, Ceriporia aurantiocarnescens, Oligoporus tephroleucus, Polyporus udus,andTyromyces kmetii are newly reported from Iran, and the following seven species are reported as new to this province: Coriolopsis gallica, Fomitiporia punctata, Hapalopilus nidulans, Inonotus cuticularis, Oligo- porus hibernicus, Phylloporia ribis,andPolyporus tuberaster. An updated checklist of polypores for Gilan Province is provided. Altogether, 66 polypores are known from Gilan up to now. Key words: fungi, hyrcanian forests, poroid basidiomycetes. Article history: received 28 July 2016, revised 13 September 2016, accepted 14 September 2016, published online 27 September 2016. Amoopour M., Ghobad-Nejhad M., Khodaparast S.A. (2016): Nové nálezy chorošů pro Írán a checklist chorošů provincie Gilan. – Czech Mycol. 68(2): 139–148. Jako výsledek systematického výzkumu chorošotvarých hub v provincii Gilan jsou publikovány nové druhy pro Írán: Antrodiella fragrans, Ceriporia aurantiocarnescens, Oligoporus tephroleu- cus, Polyporus udus a Tyromyces kmetii. -
May 2015 Newsletter of the Central New York Mycological Society ______
May 2015 Newsletter of the Central New York Mycological Society __________________________________________________________________________________________________________ Stereum hirsutum Hairy Parchment Stereum ostrea False Turkey-tail Stereum striatum Silky Parchment Strobilurus esculentus Spruce Cone Cap Trametes gibbosa Lenzites elegans/Trametes elegans/Lenzites gibbosa Trametes hirsuta Hairy Turkey Tail Trametes versicolor Turkey-tail Trichaptum biforme Violet Toothed Polypore Trichia favoginea Physcia stellaris Star Rosette Lichen They’re coming . and hopefully they’ll bring friends! (tentative) https://siskiyou.sou.edu/2015/04/08/morel-mushrooms-the-new-gold- rush/ ESF Masters student Brandon Haynes shared the results of his research using oyster mushroom spawn to filter E April Recap coli from waste water. Many thanks to Brandon for getting the year off to a great start with his interesting Thanks to Paula Desanto for providing the following program! species list from the winter foray at the Rand Tract in March: Next month Bernie Carr will educate us about trees and Daedaleopsis confragosa Thin-maze Flat Polypore the mushrooms they grow with. A must for all Fomes fomentarius Tinder Polypore mushroom hunters! The May foray will be at Morgan Irpex lacteus Milk-white Toothed Polypore Hill State Forest . Directions : from I-81S take the Tully Ischnoderma resinosum Resinous Polypore Exit and turn left from the exit ramp. Take the next left Panellus stipticus Luminescent Panellus Schizophyllum commune Common Split Gill onto Route 80. Follow Route 80 east through Tully and Stereum complicatum Crowded Parchment Apulia. Just beyond Venture Farms take a right onto Stereum hirsutum Hairy Stereum Herlihy Road. Follow this to the top of the hill and Stereum striatum Silky Parchment turn left (before Spruce Pond). -
Polypore Diversity in North America with an Annotated Checklist
Mycol Progress (2016) 15:771–790 DOI 10.1007/s11557-016-1207-7 ORIGINAL ARTICLE Polypore diversity in North America with an annotated checklist Li-Wei Zhou1 & Karen K. Nakasone2 & Harold H. Burdsall Jr.2 & James Ginns3 & Josef Vlasák4 & Otto Miettinen5 & Viacheslav Spirin5 & Tuomo Niemelä 5 & Hai-Sheng Yuan1 & Shuang-Hui He6 & Bao-Kai Cui6 & Jia-Hui Xing6 & Yu-Cheng Dai6 Received: 20 May 2016 /Accepted: 9 June 2016 /Published online: 30 June 2016 # German Mycological Society and Springer-Verlag Berlin Heidelberg 2016 Abstract Profound changes to the taxonomy and classifica- 11 orders, while six other species from three genera have tion of polypores have occurred since the advent of molecular uncertain taxonomic position at the order level. Three orders, phylogenetics in the 1990s. The last major monograph of viz. Polyporales, Hymenochaetales and Russulales, accom- North American polypores was published by Gilbertson and modate most of polypore species (93.7 %) and genera Ryvarden in 1986–1987. In the intervening 30 years, new (88.8 %). We hope that this updated checklist will inspire species, new combinations, and new records of polypores future studies in the polypore mycota of North America and were reported from North America. As a result, an updated contribute to the diversity and systematics of polypores checklist of North American polypores is needed to reflect the worldwide. polypore diversity in there. We recognize 492 species of polypores from 146 genera in North America. Of these, 232 Keywords Basidiomycota . Phylogeny . Taxonomy . species are unchanged from Gilbertson and Ryvarden’smono- Wood-decaying fungus graph, and 175 species required name or authority changes. -
Tropical <I>Trametes Lactinea</I> Is Widely Distributed in the Eastern
ISSN (print) 0093-4666 © 2011. Mycotaxon, Ltd. ISSN (online) 2154-8889 MYCOTAXON Volume 115, pp. 271–279 January–March 2011 doi: 10.5248/115.271 Tropical Trametes lactinea is widely distributed in the eastern USA Josef Vlasák1,2* & Jiří Kout3 1Biol. Centre of the Academy of Sciences of the Czech Republic &2University of South Bohemia, Faculty of Science, Branišovská 31, CZ-370 05 České Budějovice, Czech Republic 3University of West Bohemia, Faculty of Education, Department of Biology, Klatovská 51, CZ-306 19 Pilsen, Czech Republic * Correspondence to: [email protected] Abstract — Trametes lactinea is reported from the USA for the first time. This large and conspicuous polypore, known until now only from tropical regions, was collected in many different localities in eastern USA. ITS region of six collected specimens and four others from public and private herbaria was sequenced and compared with the sequences in the GenBank. Important macro- and micro-characteristics that discriminate between T. lactinea and its similar species T. elegans are pointed out and discussed. Key words — Basidiomycota, USA new record, taxonomy, invasive species Introduction Since 2001, we have occasionally collected in the eastern USA (from Virginia to Connecticut) a very large (≤ 7 cm thick, ≤ 20 cm wide), white to light greyish Trametes species with a velutinous but not hirsute pileus and large, regular pores that appear a bit brownish when old. The collections, which were always sterile, could not be identified using the keys for USA Trametes species. In early spring 2009 when travelling around southern Florida we noted a great abundance of a very similar, but thinner and fertile, Trametes sp. -
Spor E Pr I N Ts
SPOR E PR I N TS BULLETIN OF THE PUGET SOUND MYCOLOGICAL SOCIETY Number 503 June 2014 WOULD A ROSY GOMPHIDIUS BY ANY OTHER NAME SMELL AS SWEET? Rebellion against dual-naming system gains Many fungi are shape-shifters seemingly designed momentum but still faces a few hurdles to defy human efforts at categorization. The same species, sometimes the same individual, can reproduce by Susan Milius two ways: sexually, by mixing genes with a partner of Science News April 18, 2014 the same species, or asexually, by cloning to produce To a visitor walking down, down, down the white genetically identical offspring. cinder block stairwell and through metal doors into the The problem is that reproductive modes can take basement, Building 010A takes on the hushed, mile- entirely different anatomical forms. A species that long-beige-corridor feel of some secret government looks like a miniature corn dog when it is reproducing installation in a blockbuster movie. sexually might look like fuzzy white twigs when it is in Biologist Shannon Dominick wears a striped sweater cloning mode. A gray smudge on a sunflower seed head as she strolls through this Fort Knox of fungus, merrily might just be the asexually reproducing counterpart of discussing certain specimens in the vaults that are a tiny satellite dish-shaped thing. commonly called “dog vomit fungi.” When many of these pairs were discovered, sometimes This basement on the campus of the Agricultural decades apart, sometimes growing right next to each Research Service in Beltsville, Md., holds the second other, it was difficult or impossible to demonstrate that largest fungus collection in the world, with at least one they were the same thing. -
Characterization of Trametes Versicolor : Medicinal Mushroom with Important Health Benefits
Available online: www.notulaebotanicae.ro Print ISSN 0255-965X; Electronic 1842-4309 Notulae Botanicae Horti AcademicPres Not Bot Horti Agrobo, 2018, 46(2):343-349. DOI:10.15835/nbha46211132 Agrobotanici Cluj-Napoca Original Article Characterization of Trametes versicolor : Medicinal Mushroom with Important Health Benefits Raluca M. POP 1, Ion Cosmin PUIA 2,3 , Aida PUIA 4*, Veronica S. CHEDEA 5, Nicolae LEOPOLD 6, Ioana C. BOCSAN 1, Anca D. BUZOIANU 1 1“Iuliu Hatieganu” University of Medicine and Pharmacy, Faculty of Medicine, Department of Pharmacology, Toxicology and Clinical Pharmacology, 23 Marinescu Street, Cluj-Napoca, Romania; [email protected] ; [email protected] ; [email protected] 2“Iuliu Hatieganu” University of Medicine and Pharmacy, Faculty of Medicine, Department of Surgery, 19-21 Croitorilor Street, Cluj-Napoca, Romania; [email protected] 3“Octavian Fodor” Regional Institute of Gastroenterology and Hepatology, 3rd General Surgery Clinic, 19-21 Croitorilor Street, Cluj-Napoca, Romania 4“Iuliu Hatieganu” University of Medicine and Pharmacy, Faculty of Medicine, Department Community Medicine, Discipline of Family Medicine, 19 Moţilor Street, Cluj-Napoca, Romania; [email protected] (*corresponding author) 5National Research and Development Institute for Biology and Animal Nutrition, Laboratory of Animal Biology, INCDBNA-IBNA Balotesti, Ilfov, Romania; [email protected] 6Babeş-Bolyai University, Faculty of Physics, 1 Kogălniceanu Street, Cluj-Napoca, Romania; [email protected] Abstract Trametes species represents a rich source of nutritive compounds with important pharmacological properties like antioxidant, antiinflammatory and anti-cancer properties. However, factors like genetic background, harvesting period, geographic location, climatic conditions and others are influencing the biosynthesis of bioactive compounds, their fingerprint and their concentration. -
Polypore Fungi As a Flagship Group to Indicate Changes in Biodiversity – a Test Case from Estonia Kadri Runnel1* , Otto Miettinen2 and Asko Lõhmus1
Runnel et al. IMA Fungus (2021) 12:2 https://doi.org/10.1186/s43008-020-00050-y IMA Fungus RESEARCH Open Access Polypore fungi as a flagship group to indicate changes in biodiversity – a test case from Estonia Kadri Runnel1* , Otto Miettinen2 and Asko Lõhmus1 Abstract Polyporous fungi, a morphologically delineated group of Agaricomycetes (Basidiomycota), are considered well studied in Europe and used as model group in ecological studies and for conservation. Such broad interest, including widespread sampling and DNA based taxonomic revisions, is rapidly transforming our basic understanding of polypore diversity and natural history. We integrated over 40,000 historical and modern records of polypores in Estonia (hemiboreal Europe), revealing 227 species, and including Polyporus submelanopus and P. ulleungus as novelties for Europe. Taxonomic and conservation problems were distinguished for 13 unresolved subgroups. The estimated species pool exceeds 260 species in Estonia, including at least 20 likely undescribed species (here documented as distinct DNA lineages related to accepted species in, e.g., Ceriporia, Coltricia, Physisporinus, Sidera and Sistotrema). Four broad ecological patterns are described: (1) polypore assemblage organization in natural forests follows major soil and tree-composition gradients; (2) landscape-scale polypore diversity homogenizes due to draining of peatland forests and reduction of nemoral broad-leaved trees (wooded meadows and parks buffer the latter); (3) species having parasitic or brown-rot life-strategies are more substrate- specific; and (4) assemblage differences among woody substrates reveal habitat management priorities. Our update reveals extensive overlap of polypore biota throughout North Europe. We estimate that in Estonia, the biota experienced ca. 3–5% species turnover during the twentieth century, but exotic species remain rare and have not attained key functions in natural ecosystems. -
Induction of Laccase, Lignin Peroxidase and Manganese Peroxidase Activities in White-Rot Fungi Using Copper Complexes
molecules Article Induction of Laccase, Lignin Peroxidase and Manganese Peroxidase Activities in White-Rot Fungi Using Copper Complexes Martina Vrsanska 1, Stanislava Voberkova 1,2, Vratislav Langer 3, Dagmar Palovcikova 4, Amitava Moulick 1,2, Vojtech Adam 1,2 and Pavel Kopel 1,2,* 1 Department of Chemistry and Biochemistry, Mendel University in Brno, Zemedelska 1, CZ-613 00 Brno, Czech Republic; [email protected] (M.V.); [email protected] (S.V.); [email protected] (A.M.); [email protected] (V.A.) 2 Central European Institute of Technology, Brno University of Technology, Purkynova 123, CZ-612 00 Brno, Czech Republic 3 Environmental Inorganic Chemistry, Department of Chemical and Biological Engineering, Chalmers University of Technology, SE-412 96 Göteborg, Sweden; [email protected] 4 Department of Forest Protection and Wildlife Management, Faculty of Forestry and Wood Technology, Mendel University in Brno, Zemedelska 1, CZ-613 00 Brno, Czech Republic; [email protected] * Correspondence: [email protected]; Tel.: +420-5-4521-2044 Academic Editors: Derek J. McPhee and Claudiu T. Supuran Received: 9 October 2016; Accepted: 11 November 2016; Published: 17 November 2016 Abstract: Ligninolytic enzymes, such as laccase, lignin peroxidase and manganese peroxidase, are biotechnologically-important enzymes. The ability of five white-rot fungal strains Daedaleopsis confragosa, Fomes fomentarius, Trametes gibbosa, Trametes suaveolens and Trametes versicolor to produce these enzymes has been studied. Three different copper(II) complexes have been prepared ((Him)[Cu(im)4(H2O)2](btc)·3H2O, where im = imidazole, H3btc = 1,3,5-benzenetricarboxylic acid, 0 00 [Cu3(pmdien)3(btc)](ClO4)3·6H2O) and [Cu3(mdpta)3(btc)](ClO4)3·4H2O, where pmdien = N,N,N ,N , N00-pentamethyl-diethylenetriamine and mdpta = N,N-bis-(3-aminopropyl)methyl-amine), and their potential application for laccase and peroxidases induction have been tested.