CHK2 Is Negatively Regulated by Protein Phosphatase 2A
Total Page:16
File Type:pdf, Size:1020Kb
University of South Florida Scholar Commons Graduate Theses and Dissertations Graduate School 5-31-2010 CHK2 is Negatively Regulated by Protein Phosphatase 2A Alyson Freeman University of South Florida Follow this and additional works at: https://scholarcommons.usf.edu/etd Part of the American Studies Commons, and the Biology Commons Scholar Commons Citation Freeman, Alyson, "CHK2 is Negatively Regulated by Protein Phosphatase 2A" (2010). Graduate Theses and Dissertations. https://scholarcommons.usf.edu/etd/3443 This Dissertation is brought to you for free and open access by the Graduate School at Scholar Commons. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. CHK2 is Negatively Regulated by Protein Phosphatase 2A by Alyson K. Freeman A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy Department of Cancer Biology College of Arts and Sciences University of South Florida Major Professor: Alvaro N. A. Monteiro, Ph.D. Gary W. Litman, Ph.D. Gary W. Reuther, Ph.D. Kenneth L. Wright, Ph.D. Date of Approval: January 14, 2010 Keywords: DNA damage response, phosphorylation, kinase, ionizing radiation, DNA double-strand break © Copyright 2010, Alyson K. Freeman DEDICATION To my husband Scott N. Freeman, my parents James P. and Carolyn C. Fay, and my sister Erin M. Fay. ACKNOWLEDGEMENTS I first and foremost would like to thank my mentor, Dr. Alvaro Monteiro. I could not have asked for a better experience in graduate school and I am grateful for all that I have learned from him. I would also like to thank my committee members Dr. Gary Litman, Dr. Gary Reuther, and Dr. Kenneth Wright for their guidance and expertise over the years. I thank Dr. Fred Bunz for taking the time to serve as the outside chairperson for my defense. Thank you to former lab members Marcelo Carvalho, Virna Dapic, Sylvia Marsillac, Jonathan Rios-Doria and current members Huey Nguyen, Melissa Price, Michael Sweet, Aneliya Velkova, and Nicholas Woods for their help, the great scientific discussions, and for making the lab a enjoyable place to be. I thank Cathy Gaffney for her support and all the work she does for the Cancer Biology Program. I want to extend a special thank you to my husband, Scott Freeman, who has given me endless support and advice as someone who went through this exact process two years before me. TABLE OF CONTENTS LIST OF FIGURES iv LIST OF ABBREVIATIONS vi ABSTRACT viii INTRODUCTION 1 DNA Damage Response Pathway 1 Sensors - Mre11-Rad50-Nbs1 and Rad9-Rad1-Hus1 Complexes 4 Signal Transducing Kinases - ATM and ATR 4 Effector Kinases - CHK1 and CHK2 5 Mediators - H2AX, BRCA1, MDC1, and 53BP1 7 Effector Proteins - Cdc25, E2F1, and p53 8 Checkpoint Kinase CHK2 10 CHK2 Structure and Activation 10 CHK2 in Cancer 13 CHK2 Phenotype 15 Protein Serine/Threonine Phosphatases 17 PP2A Structure and Regulation 17 PP2A Function 21 PP2A in Cancer 22 Protein Serine/Threonine Phosphatases in the DNA Damage Response 23 DNA Damage Response Proteins that are Negatively Regulated 23 ATM and ATR 25 RPA 26 CHK1 26 CHK2 28 H2AX 31 P53 32 DNA Damage Response Proteins Whose Activities are Enhanced 35 ATM 35 ATR 36 DNA-PK 36 BRCA1 37 P53 38 i Summary and Rationale 38 MATERIALS AND METHODS 40 Cloning 40 Yeast Two-Hybrid 40 Cell Culture, Transfection, and Reagents 41 Immunoprecipitations 41 Immunoblotting 42 Kinase Activity Assay 43 Subcellular Fractionation 44 Phosphatase Activity Assay 44 Protein Stability 45 RESULTS 46 CHK2 Binds to the B'α Subunit of PP2A 46 CHK2 Interacts with the B'α Subunit of PP2A in Yeast 46 CHK2 and B'α Bind in Mammalian Cells 51 Binding Between CHK2 and PP2A is Modulated by DNA Damage 54 B'α and CHK2 Dissociate upon IR-induced DNA Damage 54 CHK2 Binds to Many PP2A Subunits 58 B'α and CHK2 are Dissociated After DNA Damage Caused by IR and Doxorubicin, but not B'α and CHK1 61 Analysis of the IR-induced Dissociation of CHK2 and B'α 63 Dissociation is an Early Event and Occurs in a Dose-dependent Manner 63 Re-Association of CHK2 and B'α does Not Correlate With Resolution of DNA Damage 67 The Activity of ATM, but not PP2A, is Necessary for the Dissociation of CHK2 and B'α 71 Mutation of CHK2 Serines 33 and 35 Affects Binding to B'α 75 Analysis of the Effects of CHK2 on PP2A 77 CHK2 can Phosphorylate B'α in vitro 77 PP2A Localization is Not Influenced by IR 79 PP2A Activity is Unaffected by IR and is Not Influenced by CHK2 82 Analysis of the Effects of PP2A on CHK2 87 Changes in CHK2 Phosphorylation Due to IR 87 Changes in CHK2 Kinase Activity after IR 91 Mutation of CHK2 Serines 33 and 35 Affects Protein Stability 94 ii DISCUSSION 97 LIST OF REFERENCES 103 ABOUT THE AUTHOR END PAGE iii LIST OF FIGURES Figure 1. The DNA damage response pathway. 3 Figure 2. The structure of CHK2. 12 Figure 3. PP2A holoenzyme structure. 20 Figure 4. Protein serine/threonine phosphatases in the DNA damage response pathway. 24 Figure 5. B'α binds to CHK2 amino acids 1-107. 49 Figure 6. CHK2 binds to B'α amino acids 89-322. 50 Figure 7. CHK2 binds to FLAG-B'α in mammalian cells. 52 Figure 8. Endogenous CHK2 and endogenous B'α bind in mammalian cells. 53 Figure 9. Binding between CHK2 and B'α is dissociated after DNA damage. 56 Figure 10. Dissociation of CHK2 and B'α is verified using another CHK2 antibody. 57 Figure 11. CHK2 binds to many PP2A B' subunits and they are dissociated after IR. 59 Figure 12. Endogenous PP2A C and CHK2 can bind and they are dissociated after IR. 60 Figure 13. Dissociation of CHK2 and B'α is caused by DNA damage induced by IR and doxorubicin. 62 Figure 14. Dissociation of CHK2 and B'α occurs in a dose-dependent manner. 65 Figure 15. Dissociation of CHK2 and B'α is and early event after IR. 66 Figure 16. CHK2 and B'α are able to re-associate hours after 6 Gy IR. 69 Figure 17. CHK2 and B'α are able to re-associate hours after 50 Gy IR. 70 iv Figure 18. PP2A phosphatase activity is not required for CHK2 binding to or dissociating from B'α. 73 Figure 19. Inhibition of ATM and DNA-PK kinase activity prevents the IR- induced dissociation of B'α and CHK2. 74 Figure 20. Mutation of CHK2 serines 33 and 35 affects binding to B'α. 76 Figure 21. CHK2 can phosphorylate B'α in vitro. 78 Figure 22. B'α localization is not changed by IR. 80 Figure 23. Localization of endogenous PP2A proteins do not change after IR. 81 Figure 24. Total PP2A phosphatase activity does not change after IR. 84 Figure 25. Phosphatase activity of PP2A containing B'α does not change after IR. 85 Figure 26. Total PP2A activity does not differ in HCT116 wild-type and CHK2-/- cells. 86 Figure 27. Inhibition of PP2A activity increases CHK2 activity. 89 Figure 28. Mutation of CHK2 serines 33 and 35 affects CHK2 phosphorylation at other sites. 90 Figure 29. B'α overexpression negatively affects CHK2 kinase activity. 92 Figure 30. Mutation of CHK2 serines 33 and 35 affects CHK2 kinase activity. 93 Figure 31A. Mutation of CHK2 serines 33 and 35 affects CHK2 protein stability. 95 Figure 31B. Mutation of CHK2 serines 33 and 35 affects CHK2 protein stability. 96 Figure 32. Model of PP2A regulation of CHK2 through binding and dissociation. 102 v LIST OF ABBREVIATIONS 4-NQO 4-nitroquinoline-N-oxide 9-1-1 Rad9-Rad1-Hus1 AT Ataxia-telangiectasia ATLD AT-like disorder ATM Ataxia telangiectasia mutated ATR ATM-Rad3-related kinase ATRIP ATR interacting protein BRCA1 Breast cancer susceptibility 1 CHK2 Checkpoint kinase 2 CHK1 Checkpoint kinase 1 CPT Camptothecin DDR DNA damage response DNA-PK DNA-dependent protein kinase DOX Doxorubicin DSB DNA double-strand breaks ES Embryonic stem HR Homologous recombination HU Hydroxyurea IB Immunoblot IP Immunoprecipitation vi IR Ionizing radiation MEF Mouse embryonic fibroblast MMC Mitomycin C MMS Methylmethane sulfonate MRN Mre11-Rad50-Nbs1 NBS Nijmegen Breakage Syndrome NCS Neocarzinostatin NHEJ Non-homologous end joining NLS Nuclear localization signal OA Okadaic acid PCNA Proliferating cell nuclear antigen PIKK PI-3K like kinase PP2A Protein phosphatase 2A PPP Phosphoprotein phosphatase PPM Metal-dependent protein phosphatase PSP Protein serine/threonine phosphatase RDS Radioresistant DNA synthesis RFC Replication factor C RPA Replication protein A SSB Single-strand breaks VPR Viral protein R vii CHK2 IS NEGATIVELY REGULATED BY PROTEIN PHOSPHATSE 2A Alyson K. Freeman ABSTRACT Checkpoint kinase 2 (CHK2) is an effector kinase of the DNA damage response pathway and although its mechanism of activation has been well studied, the attenuation of its activity following DNA damage has not been explored. Here, we identify the B'α subunit of protein phosphatase 2A (PP2A), a major protein serine/threonine phosphatase of the cell, as a CHK2 binding partner and show that their interaction is modulated by DNA damage. B'α binds to the SQ/TQ cluster domain of CHK2, which is a target of ATM phosphorylation. CHK2 is able to bind to many B' subunits as well as the PP2A C subunit, indicating that it can bind to the active PP2A enzyme. The induction of DNA double-strand breaks by ionizing radiation (IR) as well as treatment with doxorubicin causes dissociation of the B'α and CHK2 proteins, however, it does not have an effect on the binding of B'α to CHK1.