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Prioritising Threatened Species and Threatening Processes Across Northern Australia: User Guide for Data
Prioritising threatened species and threatening processes across northern Australia User guide for data by Anna Pintor, Mark Kennard, Jorge G. Álvarez-Romero and Stephanie Hernandez © James Cook University, 2019 Prioritising threatened species and threatening processes across northern Australia: User guide for data is licensed by James Cook University for use under a Creative Commons Attribution 4.0 Australia licence. For licence conditions see creativecommons.org/licenses/by/4.0 This report should be cited as: Pintor A,1 Kennard M,2 Álvarez-Romero JG,1,3 and Hernandez S.1 2019. Prioritising threatened species and threatening processes across northern Australia: User guide for data. James Cook University, Townsville. 1. James Cook University 2. Griffith University 3. ARC Centre of Excellence for Coral Reef Studies Cover photographs Front cover: Butler’s Dunnart is a threatened species which is found only on the Tiwi Islands in the Northern Territory, photo Alaric Fisher. Back cover: One of the spatially explicit maps created during this project. This report is available for download from the Northern Australia Environmental Resources (NAER) Hub website at nespnorthern.edu.au The Hub is supported through funding from the Australian Government’s National Environmental Science Program (NESP). The NESP NAER Hub is hosted by Charles Darwin University. ISBN 978-1-925800-44-9 December, 2019 Printed by Uniprint Contents Acronyms....................................................................................................................................vi -
Niiwalarra Islands and Lesueur Island
Niiwalarra Islands (Sir Graham Moore Islands) National Park and Lesueur Island Nature Reserve Joint management plan 2019 Management plan 93 Conservation and Parks Commission Department of Biodiversity, Conservation and Attractions Department of Biodiversity, Conservation and Attractions Parks and Wildlife Service 17 Dick Perry Avenue Technology Park, Western Precinct KENSINGTON WA 6151 Phone (08) 9219 9000 Fax (08) 9334 0498 dbca.wa.gov.au © State of Western Australia 2019 December 2019 ISBN 978-1-925978-03-2 (print) ISBN 978-1-921703-94-2 (online) WARNING: This plan may show photographs of, and refer to quotations from people who have passed away. This work is copyright. All traditional and cultural knowledge in this joint management plan is the cultural and intellectual property of Kwini Traditional Owners and is published with the consent of Balanggarra Aboriginal Corporation on their behalf. Written consent from Balanggarra Aboriginal Corporation must be obtained for use or reproduction of any such materials. Any unauthorised dealing may be in breach of the Copyright Act 1968 (Cth). All other non-traditional and cultural content in this joint management plan may be downloaded, displayed, printed and reproduced in unaltered form for personal use, non-commercial use or use within your organisation. Apart from any use as permitted under the Copyright Act 1968, all other rights are reserved. Requests and enquiries concerning reproduction and rights should be addressed to the Department of Biodiversity, Conservation and Attractions. NB: The spelling of some of the words for country, and species of plants and animals in language are different in various documents. This is primarily due to the fact that establishing a formal and consistent ‘sounds for spelling’ system for a language that did not have a written form takes time to develop and refine. -
Biodiversity Summary: Cape York, Queensland
Biodiversity Summary for NRM Regions Species List What is the summary for and where does it come from? This list has been produced by the Department of Sustainability, Environment, Water, Population and Communities (SEWPC) for the Natural Resource Management Spatial Information System. The list was produced using the AustralianAustralian Natural Natural Heritage Heritage Assessment Assessment Tool Tool (ANHAT), which analyses data from a range of plant and animal surveys and collections from across Australia to automatically generate a report for each NRM region. Data sources (Appendix 2) include national and state herbaria, museums, state governments, CSIRO, Birds Australia and a range of surveys conducted by or for DEWHA. For each family of plant and animal covered by ANHAT (Appendix 1), this document gives the number of species in the country and how many of them are found in the region. It also identifies species listed as Vulnerable, Critically Endangered, Endangered or Conservation Dependent under the EPBC Act. A biodiversity summary for this region is also available. For more information please see: www.environment.gov.au/heritage/anhat/index.html Limitations • ANHAT currently contains information on the distribution of over 30,000 Australian taxa. This includes all mammals, birds, reptiles, frogs and fish, 137 families of vascular plants (over 15,000 species) and a range of invertebrate groups. Groups notnot yet yet covered covered in inANHAT ANHAT are notnot included included in in the the list. list. • The data used come from authoritative sources, but they are not perfect. All species names have been confirmed as valid species names, but it is not possible to confirm all species locations. -
Rangelands, Western Australia
Biodiversity Summary for NRM Regions Species List What is the summary for and where does it come from? This list has been produced by the Department of Sustainability, Environment, Water, Population and Communities (SEWPC) for the Natural Resource Management Spatial Information System. The list was produced using the AustralianAustralian Natural Natural Heritage Heritage Assessment Assessment Tool Tool (ANHAT), which analyses data from a range of plant and animal surveys and collections from across Australia to automatically generate a report for each NRM region. Data sources (Appendix 2) include national and state herbaria, museums, state governments, CSIRO, Birds Australia and a range of surveys conducted by or for DEWHA. For each family of plant and animal covered by ANHAT (Appendix 1), this document gives the number of species in the country and how many of them are found in the region. It also identifies species listed as Vulnerable, Critically Endangered, Endangered or Conservation Dependent under the EPBC Act. A biodiversity summary for this region is also available. For more information please see: www.environment.gov.au/heritage/anhat/index.html Limitations • ANHAT currently contains information on the distribution of over 30,000 Australian taxa. This includes all mammals, birds, reptiles, frogs and fish, 137 families of vascular plants (over 15,000 species) and a range of invertebrate groups. Groups notnot yet yet covered covered in inANHAT ANHAT are notnot included included in in the the list. list. • The data used come from authoritative sources, but they are not perfect. All species names have been confirmed as valid species names, but it is not possible to confirm all species locations. -
Biodiversity Summary: Rangelands, Western Australia
Biodiversity Summary for NRM Regions Guide to Users Background What is the summary for and where does it come from? This summary has been produced by the Department of Sustainability, Environment, Water, Population and Communities (SEWPC) for the Natural Resource Management Spatial Information System. It highlights important elements of the biodiversity of the region in two ways: • Listing species which may be significant for management because they are found only in the region, mainly in the region, or they have a conservation status such as endangered or vulnerable. • Comparing the region to other parts of Australia in terms of the composition and distribution of its species, to suggest components of its biodiversity which may be nationally significant. The summary was produced using the Australian Natural Natural Heritage Heritage Assessment Assessment Tool Tool (ANHAT), which analyses data from a range of plant and animal surveys and collections from across Australia to automatically generate a report for each NRM region. Data sources (Appendix 2) include national and state herbaria, museums, state governments, CSIRO, Birds Australia and a range of surveys conducted by or for DEWHA. Limitations • ANHAT currently contains information on the distribution of over 30,000 Australian taxa. This includes all mammals, birds, reptiles, frogs and fish, 137 families of vascular plants (over 15,000 species) and a range of invertebrate groups. The list of families covered in ANHAT is shown in Appendix 1. Groups notnot yet yet covered covered in inANHAT ANHAT are are not not included included in the in the summary. • The data used for this summary come from authoritative sources, but they are not perfect. -
Molecular Phylogenetics and Comparative Anatomy Of
Contributions to Zoology, 83 (4) 245-267 (2014) Molecular phylogenetics and comparative anatomy of Kimberleytrachia Köhler, 2011 – a genus of land snail endemic to the coastal Kimberley, Western Australia with description of new taxa (Gastropoda, Camaenidae) Francesco Criscione1, Frank Köhler1, 2 1 Australian Museum, 6 College Street, Sydney NSW 2010, Australia 2 E-mail: [email protected] Key words: genetic distances, Helicoidea, mitochondrial DNA, new species, Stylommatophora Abstract Acknowledgements ...................................................................... 256 Kimberleytrachia Köhler, 2011 is a genus of camaenid land snail References ...................................................................................... 256 endemic to the Western Australian Kimberley region. It com- Appendix ........................................................................................ 259 prises twelve previously recognised species, all of which occur within the high precipitation zone along the north-western coast between the Admiralty Gulf and King Sound and within less than about 50 km distance from the coast. By evaluating the Introduction variation in shell and genital anatomy as well as the differentia- tion in the mitochondrial markers 16S and COI, we assess the The Kimberley Region, a comparatively pristine region monophyly of Kimberleytrachia with respect to other camaenid in Western Australia has yet widely escaped the impacts genera from north-western Australia. In addition, we newly of urban, industrial and agricultural development due describe six species (K. jacksonensis n. sp., K. leopardus n. sp., K. nelsonensis n. sp., K. serrata n. sp., K. setosa n. sp. and K. to its remoteness and rugged terrain. As a result, the silvaepluvialis n. sp.) based on comparative morphology and Kimberley is an area of high significance for natural mitochondrial DNA differentiation. We found that a rather heritage conservation across terrestrial and marine smooth, weakly elevated shell and, in particular, the complex environments. -
First Record of Amphidromus from Australia, with Anatomical Notes on Several Species (Mollusca: Pulmonata: Camaenidae)
AUSTRALIAN MUSEUM SCIENTIFIC PUBLICATIONS Solem, A., 1983. First record of Amphidromus from Australia, with anatomical notes on several species (Mollusca: Pulmonata: Camaenidae). Records of the Australian Museum 35(4): 153–166. [11 November 1983]. doi:10.3853/j.0067-1975.35.1983.315 ISSN 0067-1975 Published by the Australian Museum, Sydney naturenature cultureculture discover discover AustralianAustralian Museum Museum science science is is freely freely accessible accessible online online at at www.australianmuseum.net.au/publications/www.australianmuseum.net.au/publications/ 66 CollegeCollege Street,Street, SydneySydney NSWNSW 2010,2010, AustraliaAustralia Records of the Australian Museum (1983) Vol. 35: 153-166. ISSN-0067-1975. 153 First Record of Amphidromus from Australia, with Anatomical Notes on Several Species (Mollusca:Pulmonata:Camaenidae) A. SOLEM Field Museum of Natural History, Chicago, U.S.A. ABSTRACT. Amphidromus cognatus Fuiton, 1907, described from a single specimen without locality data, is here recorded from several places north of Darwin in the Northern Territory. This is the first record from Australia of this South-east Asian to Timor genus of arboreal snails. Dissections of the genotype, Amphidromus perversus (Linne, 1758) from Bali and A. poeci/ochrousjaecke/i Laidlaw, 1954, from Flores, Indonesia, provide comparative data on genital and radular structures of A. cognatus. There are easily observable species differences in the ter minal genitalia, although shell variation is great and confusing. SOLEM, A. 1983. First record of Amphidromus from Australia, with anatomical notes on several species (Mollusca:Pulmonata:Camaenidae). Records of the Australian Museum 35(4): 153-166. Amphidromus Albers, 1850, is a genus of colourful 1935) on the systematics of the Timor populations only tree-dwelling land snails that has long been popular with emphasize the complex nature of local variation and the shell collectors. -
Identification and Qualification of 500 Nuclear, Single-Copy, Orthologous Genes for The
bioRxiv preprint doi: https://doi.org/10.1101/035543; this version posted May 3, 2016. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Identification and qualification of 500 nuclear, single-copy, orthologous genes for the 2 Eupulmonata (Gastropoda) using transcriptome sequencing and exon-capture 3 Luisa C. Teasdale 1, 2, Frank Köhler3, Kevin D. Murray4, Tim O’Hara1, and Adnan Moussalli1 4 5 1 Sciences Department, Museum Victoria, 11 Nicholson St, Carlton, Vic, Australia 3053 6 2 School of BioSciences, The University of Melbourne, Parkville, Vic, Australia 3010 7 3 Australian Museum, 6 College Street, Sydney, NSW, Australia 2010 8 4 Division of Plant Sciences, Research School of Biology, Australian National University, 9 Australia 0200 10 11 Corresponding author: Luisa Teasdale, Mailing address: Sciences Department, Museum 12 Victoria, 11 Nicholson St, Carlton, Vic, Australia 3053, Fax Number: + 61 3 8341 7442, 13 Email: [email protected] 14 15 Key words: orthology, single-copy, phylogenomics, Pulmonata, transcriptome, targeted 16 enrichment 17 Running header: Orthologous genes for Eupulmonata 18 19 20 ABSTRACT 1 bioRxiv preprint doi: https://doi.org/10.1101/035543; this version posted May 3, 2016. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 21 The qualification of orthology is a significant challenge when developing large, multi- 22 loci phylogenetic datasets from assembled transcripts. -
Descriptions of New Species of the Diverse and Endemic Land Snail
© The Author, 2011. Journal compilation © Australian Museum, Sydney, 2011 Records of the Australian Museum (2011) Vol. 63: 167–202. ISSN 0067-1975 doi:10.3853/j.0067-1975.63.2011.1581 Descriptions of New Species of the Diverse and Endemic Land Snail Amplirhagada Iredale, 1933 from Rainforest Patches across the Kimberley, Western Australia (Pulmonata: Camaenidae) Frank köhler Department of Environment and Conservation of Western Australia, Science Division, Wildlife Place, Woodvale WA 6026, Australia and Australian Museum, 6 College Street, Sydney NSW 2010, Australia [email protected] abstract. Fifteen species of the camaenid land snail Amplirhagada, which are endemic to the Kimberley region in Western Australia, are newly described in the present work based on material collected in 1987 during the Kimberley Rainforest Survey of the then Dept. Conservation and Land Management, Western Australia. These species were listed previously as new discoveries under preliminary species identifications but have never been validly described. All of them were collected in rainforest and vine thicket patches across the Kimberley, where they generally occur as narrow-range endemics. The species are most typically characterized by a peculiar penial anatomy while other morphological structures, such as the shell or radula, provide characters less or not suitable for unambiguous species identification. Three manuscript taxa listed as potentially new are here preliminarily subsumed under an already described taxon, A. carinata Solem, 1981. By contrast to all other species treated herein, A. carinata has a fairly large distribution around the Walcott Inlet in the Southwest Kimberley. This taxon also reveals a comparatively large amount of morphological variation not only with respect to the shell but also to its genital anatomy. -
Northern Gulf, Queensland
Biodiversity Summary for NRM Regions Species List What is the summary for and where does it come from? This list has been produced by the Department of Sustainability, Environment, Water, Population and Communities (SEWPC) for the Natural Resource Management Spatial Information System. The list was produced using the AustralianAustralian Natural Natural Heritage Heritage Assessment Assessment Tool Tool (ANHAT), which analyses data from a range of plant and animal surveys and collections from across Australia to automatically generate a report for each NRM region. Data sources (Appendix 2) include national and state herbaria, museums, state governments, CSIRO, Birds Australia and a range of surveys conducted by or for DEWHA. For each family of plant and animal covered by ANHAT (Appendix 1), this document gives the number of species in the country and how many of them are found in the region. It also identifies species listed as Vulnerable, Critically Endangered, Endangered or Conservation Dependent under the EPBC Act. A biodiversity summary for this region is also available. For more information please see: www.environment.gov.au/heritage/anhat/index.html Limitations • ANHAT currently contains information on the distribution of over 30,000 Australian taxa. This includes all mammals, birds, reptiles, frogs and fish, 137 families of vascular plants (over 15,000 species) and a range of invertebrate groups. Groups notnot yet yet covered covered in inANHAT ANHAT are notnot included included in in the the list. list. • The data used come from authoritative sources, but they are not perfect. All species names have been confirmed as valid species names, but it is not possible to confirm all species locations. -
IS13027 Supplementary Material
10.1071/IS13027_AC © CSIRO 2013 Supplementary Material: Invertebrate Systematics 27 , 634–654. Supplementary Material More on snails and islands: molecular systematics and taxonomic revision of Setobaudinia Iredale (Gastropoda : Camaenidae) from the Kimberley, Western Australia, with description of new taxa Francesco Criscione A and Frank Köhler A,B AAustralian Museum, 6 College Street, Sydney, NSW 2010, Australia. BCorresponding author. Email: [email protected] Table S1. Museum registration numbers, voucher status and GenBank accession numbers of samples included in the molecular analysis AM, Australian Museum, Sydney; FMNH, Field Museum of Natural History, Chicago; Ht, Holotype; NTM, Museum and Art Gallery of Northern Territory, Darwin; Pt, Paratype; QM, Queensland Museum, Brisbane; WAM, Western Australian Museum, Perth Taxon Museum registration Status GenBank accession numbers number COI 16S Baudinella occidentalis Köhler, 2011 WAM S37079 KF226182 HQ245452 WAM S37694 KF226183 KF226145 Baudinella setobaudinoides Köhler, 2011 WAM S37035 KF226184 HQ245446 WAM S37036 KC703099 HQ245447 Baudinella thielei Köhler, 2011 WAM S36398 KF226185 HQ245451 WAM S36756 KF226186 KF226146 Baudinella tuberculata Köhler, 2011 WAM S37061 KF226187 HQ245448 WAM S37062 KF226188 HQ245450 N. gen 1, sp. nov. WAM S66304 KC703179 KC703173 Cristilabrum sp. WAM S49206 KC614752 KC614705 Cristilabrum sp. WAM S49207 KC614753 KC614706 Cristilabrum sp. WAM S49208 KC614754 KC614707 Eurytrachia mucosa (Cox, 1868) QM 54302 - GQ851208 Exiligada brabyi Criscione -
Biodiversity Values on Selected Kimberley Islands, Australia Edited by L.A. Gibson, S. Yates and P. Doughty
RecoRds of the WesteRn AustraliAn MuseuM 81 SUPPLEMENT Biodiversity values on selected Kimberley islands, Australia edited by L.A. Gibson, S. Yates and P. Doughty RecoRds of the WesteRn AustraliAn MuseuM 81 040–065 (2012) SUPPLEMENT Determinants of species richness and similarity of species composition of land snail communities on Kimberley islands L.A. Gibson1 and F. Köhler1,2 1 Department of Environment and Conservation, Science Division, PO Box 51, Wanneroo, Western Australia 6946, Australia. 2 Australian Museum, 6 College Street, Sydney, New South Wales 2010, Australia Email: [email protected] ABSTRACT – We investigated patterns in species richness and similarity in species composition of land snail communities in relation to biogeographic and environmental gradients on continental islands along the Kimberley coastline of Western Australia. The camaenid land snails demonstrated high overall species richness, restricted geographical ranges (mostly to a single island) and almost complete turnover of species among islands. In comparison, the overall number of the smaller non-camaenid land snail species was much lower. They also had much wider distributions and a lower level of species turnover among islands. These results are consistent with the differing dispersal abilities of the two groups, one fostering in situ speciation and the other inter-island colonisation. We also show that dispersal ability was not the only driver of species richness and composition of land snail species on islands, but that rainfall, island area and availability of habitat also played a role. Rainfall was the major environmental driver of richness and composition for both groups of land snails. Rainfall was also highly correlated with extent of rainforest cover, habitat that provides a suitable micro-climate for snails and additional ecological niches compared to more open habitats.