The Role of Tropical Dry Forest As a Long-Term Barrier to Dispersal: a Comparative Phylogeographical Analysis of Dry Forest Tolerant and Intolerant Frogs
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A Collection of Amphibians from Río San Juan, Southeastern Nicaragua
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/264789493 A collection of amphibians from Río San Juan, southeastern Nicaragua Article in Herpetology Notes · January 2009 CITATIONS READS 12 188 4 authors, including: Javier Sunyer Matthias Dehling University of Canterbury 89 PUBLICATIONS 209 CITATIONS 54 PUBLICATIONS 967 CITATIONS SEE PROFILE SEE PROFILE Gunther Köhler Senckenberg Research Institute 222 PUBLICATIONS 1,617 CITATIONS SEE PROFILE Some of the authors of this publication are also working on these related projects: Zoological Research in Strict Forest Reserves in Hesse, Germany View project Diploma Thesis View project All content following this page was uploaded by Javier Sunyer on 16 August 2018. The user has requested enhancement of the downloaded file. Herpetology Notes, volume 2: 189-202 (2009) (published online on 29 October 2009) A collection of amphibians from Río San Juan, southeastern Nicaragua Javier Sunyer1,2,3*, Guillermo Páiz4, David Matthias Dehling1, Gunther Köhler1 Abstract. We report upon the amphibians collected during seven expeditions carried out between the years 2000–2006 to thirteen localities in both Refugio de Vida Silvestre Río San Juan and Reserva Biológica Indio-Maíz, southeastern Nicaragua. We include morphometric data of around one-half of the adult specimens in the collection, and provide a brief general overview and discuss zoogeographic and conservation considerations of the amphibians known to occur in the Río San Juan area. Keywords. Amphibia, conservation, ecology, morphometry, zoogeography. Introduction potential of holding America’s first interoceanic channel and also because it was part of the sea route to travel The San Juan River is an approximately 200 km slow- from eastern to western United States. -
NORTHWEST NAZARENE UNIVERSITY Assisting Frog
NORTHWEST NAZARENE UNIVERSITY Assisting Frog Identification in Costa Rica Using a Mobile App THESIS Submitted to the Department of Mathematics and Computer Science in partial fulfillment of the requirements for the degree of BACHELOR OF ARTS Justin Tyler Laplante 2021 THESIS Submitted to the Department of Mathematics and Computer Science in partial fulfillment of the requirements for the degree of BACHELOR OF ARTS Justin Tyler Laplante 2021 Assisting Frog Identification in Costa Rica Using a Mobile App Author: ____________________________________________________________ Justin Tyler Laplante Approved: ____________________________________________________________ Dale Hamilton, Ph.D., Professor, Department of Mathematics and Computer Science, Faculty Advisor Approved: ____________________________________________________________ John Cossel Jr., Ph.D., Professor, Chair, Department of Biology Second Reader Approved: ____________________________________________________________ Barry L. Myers, Ph.D., Chair, Department of Mathematics & Computer Science ABSTRACT Assisting Frog Identification in Costa Rica Using a Mobile App. LAPLANTE, JUSTIN (Department of Mathematics and Computer Science). Quickly identifying a single frog species from over a hundred other possible species can be a challenge for research while in the Costa Rican jungle. Though researchers can use field guides to assist, these still mean you may have look through all currently identified frog species to find the frog being viewed. This project was created to help researchers narrow the list of possible frog species quickly based on Geolocation. Using Xamarin.Forms, an app was developed that worked offline, used an ArcGIS API and was cross platform. However, to ensure performs and accuracy certain design choices were made for designing the ArcGIS map that was used within the app. The used geospatial data for the frog species and generalized it into a hexagonal pattern. -
The Most Frog-Diverse Place in Middle America, with Notes on The
Offcial journal website: Amphibian & Reptile Conservation amphibian-reptile-conservation.org 13(2) [Special Section]: 304–322 (e215). The most frog-diverse place in Middle America, with notes on the conservation status of eight threatened species of amphibians 1,2,*José Andrés Salazar-Zúñiga, 1,2,3Wagner Chaves-Acuña, 2Gerardo Chaves, 1Alejandro Acuña, 1,2Juan Ignacio Abarca-Odio, 1,4Javier Lobon-Rovira, 1,2Edwin Gómez-Méndez, 1,2Ana Cecilia Gutiérrez-Vannucchi, and 2Federico Bolaños 1Veragua Foundation for Rainforest Research, Limón, COSTA RICA 2Escuela de Biología, Universidad de Costa Rica, San Pedro, 11501-2060 San José, COSTA RICA 3División Herpetología, Museo Argentino de Ciencias Naturales ‘‘Bernardino Rivadavia’’-CONICET, C1405DJR, Buenos Aires, ARGENTINA 4CIBIO Research Centre in Biodiversity and Genetic Resources, InBIO, Universidade do Porto, Campus Agrário de Vairão, Rua Padre Armando Quintas 7, 4485-661 Vairão, Vila do Conde, PORTUGAL Abstract.—Regarding amphibians, Costa Rica exhibits the greatest species richness per unit area in Middle America, with a total of 215 species reported to date. However, this number is likely an underestimate due to the presence of many unexplored areas that are diffcult to access. Between 2012 and 2017, a monitoring survey of amphibians was conducted in the Central Caribbean of Costa Rica, on the northern edge of the Matama mountains in the Talamanca mountain range, to study the distribution patterns and natural history of species across this region, particularly those considered as endangered by the International Union for Conservation of Nature. The results show the highest amphibian species richness among Middle America lowland evergreen forests, with a notable anuran representation of 64 species. -
Herpetology at the Isthmus Species Checklist
Herpetology at the Isthmus Species Checklist AMPHIBIANS BUFONIDAE true toads Atelopus zeteki Panamanian Golden Frog Incilius coniferus Green Climbing Toad Incilius signifer Panama Dry Forest Toad Rhaebo haematiticus Truando Toad (Litter Toad) Rhinella alata South American Common Toad Rhinella granulosa Granular Toad Rhinella margaritifera South American Common Toad Rhinella marina Cane Toad CENTROLENIDAE glass frogs Cochranella euknemos Fringe-limbed Glass Frog Cochranella granulosa Grainy Cochran Frog Espadarana prosoblepon Emerald Glass Frog Sachatamia albomaculata Yellow-flecked Glass Frog Sachatamia ilex Ghost Glass Frog Teratohyla pulverata Chiriqui Glass Frog Teratohyla spinosa Spiny Cochran Frog Hyalinobatrachium chirripoi Suretka Glass Frog Hyalinobatrachium colymbiphyllum Plantation Glass Frog Hyalinobatrachium fleischmanni Fleischmann’s Glass Frog Hyalinobatrachium valeroi Reticulated Glass Frog Hyalinobatrachium vireovittatum Starrett’s Glass Frog CRAUGASTORIDAE robber frogs Craugastor bransfordii Bransford’s Robber Frog Craugastor crassidigitus Isla Bonita Robber Frog Craugastor fitzingeri Fitzinger’s Robber Frog Craugastor gollmeri Evergreen Robber Frog Craugastor megacephalus Veragua Robber Frog Craugastor noblei Noble’s Robber Frog Craugastor stejnegerianus Stejneger’s Robber Frog Craugastor tabasarae Tabasara Robber Frog Craugastor talamancae Almirante Robber Frog DENDROBATIDAE poison dart frogs Allobates talamancae Striped (Talamanca) Rocket Frog Colostethus panamensis Panama Rocket Frog Colostethus pratti Pratt’s Rocket -
Supporting Information Tables
Mapping the Global Emergence of Batrachochytrium dendrobatidis, the Amphibian Chytrid Fungus Deanna H. Olson, David M. Aanensen, Kathryn L. Ronnenberg, Christopher I. Powell, Susan F. Walker, Jon Bielby, Trenton W. J. Garner, George Weaver, the Bd Mapping Group, and Matthew C. Fisher Supplemental Information Taxonomic Notes Genera were assigned to families for summarization (Table 1 in main text) and analysis (Table 2 in main text) based on the most recent available comprehensive taxonomic references (Frost et al. 2006, Frost 2008, Frost 2009, Frost 2011). We chose recent family designations to explore patterns of Bd susceptibility and occurrence because these classifications were based on both genetic and morphological data, and hence may more likely yield meaningful inference. Some North American species were assigned to genus according to Crother (2008), and dendrobatid frogs were assigned to family and genus based on Grant et al. (2006). Eleutherodactylid frogs were assigned to family and genus based on Hedges et al. (2008); centrolenid frogs based on Cisneros-Heredia et al. (2007). For the eleutherodactylid frogs of Central and South America and the Caribbean, older sources count them among the Leptodactylidae, whereas Frost et al. (2006) put them in the family Brachycephalidae. More recent work (Heinicke et al. 2007) suggests that most of the genera that were once “Eleutherodactylus” (including those species currently assigned to the genera Eleutherodactylus, Craugastor, Euhyas, Phrynopus, and Pristimantis and assorted others), may belong in a separate, or even several different new families. Subsequent work (Hedges et al. 2008) has divided them among three families, the Craugastoridae, the Eleutherodactylidae, and the Strabomantidae, which were used in our classification. -
Cerrophidion Wilsoni Jadin, Townsend, Castoe, and Campbell, 2012. The
Cerrophidion wilsoni Jadin, Townsend, Castoe, and Campbell, 2012. The Honduran Montane Pitviper is a priority one species with an EVS of 15, placing it in the high vulnerability category (see this paper). This pitviper is distributed primarily in lower montane rainforest at elevations from 1,400 to 3,491 m, but can occur peripherally in premontane rainforest and pine-oak forest as low as 1,220 m (Jadin et al. 2012). As indicated by Jadin et al. (2012: 10), this snake “occurs in at least 13 isolated highland forest areas across Eastern Nuclear Central America…and all known populations…are found within the borders of Honduras and El Salvador.” This juvenile individual was found in Refugio de Vida Silvestre Texíguat, in north-central Honduras. One of the describers of this taxon is the dedicatee of this paper, and the snake was named in honor of one of the authors. Photo by Josiah H. Townsend. Amphib. Reptile Conserv. 1 January 2019 | Volume 13 | Number 1 | e168 DEDICATION We are happy to dedicate this paper to our friend and Josiah H. Townsend. 2018. An integrative assessment colleague, Josiah H. Townsend, Associate Professor of of the taxonomic status of putative hybrid leopard frogs Biology at Indiana University of Pennsylvania, in Indiana, (Anura: Ranidae) from the Chortís Highlands of Central Pennsylvania. Over the last two decades, since he was America, with description of a new species. Systematics a student in one of Larry Wilson’s classes, Joe has built and Biodiversity 2018: 1–17. This paper is an example an imposing reputation as the principal authority on the of the seminal work being conducted by Joe Townsend herpetofauna of the biogeographically significant Chortís and his colleagues, which is exposing the underestimated Highlands of northern Central America. -
The Role of Tropical Dry Forest As a Long-Term Barrier to Dispersal
Molecular Ecology (2007) doi: 10.1111/j.1365-294X.2007.03524.x TheBlackwell Publishing Ltd role of tropical dry forest as a long-term barrier to dispersal: a comparative phylogeographical analysis of dry forest tolerant and intolerant frogs ANDREW J. CRAWFORD,* ELDREDGE BERMINGHAM* and CAROLINA POLANÍA S.† *Smithsonian Tropical Research Institute, Apartado 0840-0309, Balboa, Ancón, Panama, and †Universidad Nacional de Colombia, Instituto de Ciencias Naturales, Apartado 7495, Bogotá, Colombia Abstract We used a comparative phylogeographical approach to investigate the origins of the disjunct wet forest biota of the Golfo Dulce region along the Pacific slope of Costa Rica. This region is isolated by Pacific dry forests north and south and isolated from Caribbean wet forests by mountains. We studied three sympatric lowland frog species in the Craugastor fitzingeri species group that prefer wet forest but differ in their response to dry habitats. In dry forest, C. fitzingeri can survive along streams while C. crassidigitus and C. talamancae are entirely absent. We collected samples from across the ranges of all three species, and obtained mitochondrial DNA sequence data from the COI and cytochrome b genes. We observed significant phylogeographical structure in C. crassidigitus and C. talamancae, but much less in C. fitzingeri, demonstrating that mountain barriers and dry forest habitat have reduced mitochondrial gene flow in the strictly wet-forest species. Additionally, we discovered that the Golfo Dulce and Central Panama populations of C. crassidigitus appear to have diverged in the Pliocene or earlier, suggesting that the dry forest separating these popula- tions is old. Our phylogenetic analysis of 12 of approximately 16 species of the C. -
Amphibian Diversity in Guayacán, Limón Province, Costa Rica
BRENESIA 69: 35-42, 2008 Amphibian diversity in Guayacán, Limón province, Costa Rica Brian Kubicki Costa Rican Amphibian Research Center. Guayacán, Provincia de Limón, Costa Rica. Apdo. 81-7200 Costa Rica. [email protected] (Received: January 30, 2008) ABSTRACT. Herein I describe the amphibian richness of a relatively unknown low to mid-elevation site on the Caribbean versant of Costa Rica. With a total of 66 species the area of Guayacán de Siquirres has an extremely rich amphibian diversity. The high amount of annual rainfall, stable intermediate temperatures, abundant coverage of secondary and old-growth forest, and varied topography at Guayacán’s low to mid-elevations create conditions that are favorable for a high diversity of flora and fauna, especially amphibians. RESUMEN. Se describe la riqueza de anfibios en un sitio relativamente desconocido en la vertiente Caribe de Costa Rica. Con un total de 66 especies el area de Guayacán de Siquirres tiene una extrema riqueza en diversidad de anfibios. La alta precipitación annual, la estabilidad de temperaturas y la abundante cobertura, tanto de bosque secundario como denso, además de la variada topografía que va desde elevaciones bajas a medias, crean condiciones que favorecen esta alta diversidad en flora y fauna, especialmente anfibios KEY WORDS. Amphibians, Amphibia, Costa Rica, Biodiversity, Guayacán Costa Rica is internationally recognized as one risen to 66. The purpose of this work is to describe of the 20 richest countries in biodiversity (Obando the amphibian diversity of this site and to highlight 2002). Amphibians form a crucial part of this its importance for conservation. impressive flora and fauna. -
Extinction Risk and Population Declines in Amphibians
Extinction Risk and Population Declines in Amphibians Jon Bielby Imperial College London, Division of Biology, A thesis submitted for the degree of Doctor of Philosophy at Imperial College London – May 2008 1 Thesis abstract This thesis is about understanding the processes that explain the patterns of extinction risk and declines that we see in amphibians, how we can use that understanding to set conservation priorities, and how we can convert those priorities into practical, hands-on research and management. In particular, I focus on the threat posed by the emerging infectious disease, chytridiomycosis, which is caused by the chytrid fungus, Batrachochytrium dendrobatidis ( Bd ). Amphibians display a non-random pattern of extinction risk, both taxonomically and geographically. In chapter two I investigate the mechanism behind the observed taxonomic selectivity and find that it is due to species biology rather than heterogeneity in either threat intensity or conservation knowledge. In chapter three I determine which biological and environmental traits are important in rendering a species susceptible to declines, focussing on susceptibility to Bd . I found that restricted range, high elevation species with an aquatic life-stage are more likely to have suffered a decline. Using these traits, I predict species and locations that may be susceptible in the future, and which should therefore be a high priority for amphibian research and conservation. 2 The use of predictive models to set conservation priorities relies on the accuracy of the modelling technique used. In chapter four I compare the predictive performance of both phylogenetic and nonphylogenetic regression and decision trees, and assess the suitability of each technique. -
Ranavirus Infection in Native Amphibians at La Selva Biological Station, Costa Rica: First Report of Ranavirus in Central America
AMPHIBIAN DISEASES 425 PasMans, F., F. MutsCHMann, t. HaLLiday, and F. zWart. 2006. Amphibian sCHoCK, d. M., g. r. rutHig, J. P. CoLLins, s. J. Kutz, s. Carrière, r. J. gau, declines: the urgent need for amphibian research in Europe. Vet. a. M. veitCH, n. C. Larter, d. P. tate, g. gutHrie, d. g. aLLaire, and r. J. 171:18–19. a. PoPKo. 2010. Amphibian chytrid fungus and ranaviruses in the Northwest Territories, Canada. Dis. Aquat. Org. 92:231–40. 2012. Sex differences in age structure, growth rate and body size sKerratt, L. F., L. Berger, r. sPeare, s. CasHins, K. r. MCdonaLd, a. d. of common frogs Rana temporaria in the subarctic. Pol. Biol. DOI PHiLLott, H. B. Hines, and n. Kenyon. 2007. Spread of chytrdiomy- 10.1007/s00300-012-1190-7. cosis has caused the rapid global decline and extinction of frogs. Pounds J. a., M. r. BustaMante, L. a. CoLoMa, J. a. Consuega, M. P. L. EcoHealth 4:125–134. Fogden, P. n. Foster, e. La MarCa, K. L. Masters, a. Merino-viteri, sKerratt, L. F., L. Berger, H. B. Hines, K. r. MCdonaLd, d. Mendez, and r. r. PusCHendorF, s. r. ron, g. a. sanCHez-azoFeiFa, C. J. stiLL, and B. sPeare. 2008. Survey protocol for detecting chytridiomycosis in all e. young. 2006. Widespread amphibian extinctions from epidemic Australian frog populations. Dis. Aquat. Org. 80:85–94. disease driven by global warming. Nature 439:161–167. sLougH, B. g. 2009. Amphibian chytrid fungus in western toads reeves, M. K. 2008. Batrachochytrium dendrobatidis in wood frogs (Anaxyrus boreas) in British Columbia and Yukon, Canada. -
New Country and Departmental Records of Herpetofauna in Nicaragua
Taxonomy, zoogeography, and conservation of the herpetofauna of Nicaragua Dissertation zur Erlangung des Doktorgrades der Naturwissenschaften vorgelegt beim Fachbereich Biologie der Goethe-Universität in Frankfurt am Main von Javier Sunyer Mac Lennan aus Madrid, Spanien Frankfurt am Main, 2009 Gedruckt mit Unterstützung des Deutschen Akademischen Austauschdienstes vom Fachbereich Biowissenschaften der Goethe-Universität als Dissertation angenommen. Dekan: Prof. Dr. Volker MÜLLER Gutachter: Prof. Dr. Bruno STREIT (Frankfurt am Main) Prof. Dr. Wolfgang BÖHME (Bonn) Datum der Disputation: ii ABSTRACT Central America is one of the world’s most herpetological diverse areas in relation to its size. Nicaragua is the largest country in this region and separates Nuclear from Lower Central America. It is one of the least herpetological explored countries in Central America and few studies dealing with the herpetofauna of a potion or the entire country have been published. I here update the checklist of the Nicaraguan herpetofauna, present taxonomic revisions of some difficult species complexes, compare the similarities of the composition of the herpetofaunal communities in the major forest formations present in the country within a zoogeographical context, and identify those species with a greater vulnerability risk in Nicaragua. Taxonomy The herpetofauna of Nicaragua currently consists of 244 species representing 134 genera and 42 families with 78 amphibian species representing 35 genera and 15 families, and 166 reptile species representing 99 genera and 27 families, which includes six marine species. Sixteen species (12 amphibians and four reptiles) are endemic to the country. Of the 12 endemic amphibian species, three are here described. In addition, five genera (Anotheca, Cerrophidion, Duellmanohyla, Isthmohyla, and Rhinobothryum) and two species (Rhadinea godmani and Urotheca decipiens) are known to occur both north and south of Nicaragua although there are no voucher specimens of these taxa to confirm their presence in country. -
Related Extinctions of Panamanian Amphibians Through Captive Breeding Programs B
Animal Conservation. Print ISSN 1367-9430 Evaluating the probability of avoiding disease-related extinctions of Panamanian amphibians through captive breeding programs B. Gratwicke1, H. Ross2, A. Batista3, G. Chaves4, A. J. Crawford5,6,7, L. Elizondo8, A. Estrada9, M. Evans10, D. Garelle11, J. Guerrel12, A. Hertz3,13, M. Hughey9, C. A. Jaramillo6,7,14,15, B. Klocke16, M. Mandica17, D. Medina9, C. L. Richards-Zawacki6,18, M. J. Ryan19, A. Sosa-Bartuano20, J. Voyles21, B. Walker15, D. C. Woodhams6,22 &R.Ibanez~ 7,12,23 1 Center for Species Survival, Smithsonian Conservation Biology Institute, National Zoological Park, Washington, DC, USA 2 Panama Amphibian Rescue and Conservation Project, El Valle Amphibian Conservation Center, Smithsonian Tropical Research Institute, Panama, Republic of Panama 3 Senckenberg Forschungsinstitut und Naturmuseum Frankfurt, Frankfurt, Germany 4 Escuela de Biologıa, Universidad de Costa Rica, San Jose, Costa Rica 5 Department of Biological Sciences, Universidad de los Andes, Bogota, Colombia 6 Smithsonian Tropical Research Institute, Panama, Republic of Panama 7Cırculo Herpetologico de Panama, Panama, Republic of Panama 8 Programa de Maestrıa en Ciencias Biologicas, Universidad de Panama, Panama, Republic of Panama 9 Department of Biological Sciences, Virginia Tech, Blacksburg, VA, USA 10 Reptile Discovery Center, Smithsonian’s National Zoological Park, Washington, DC, USA 11 Cheyenne Mountain Zoo, Colorado Springs, CO, USA 12 Panama Amphibian Rescue and Conservation Project, Smithsonian Tropical Research Institute,