Large-Scale Degradation of Amazonian Freshwater Ecosystems
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A Draft Genome of the Striped Catfish, Pangasianodon Hypophthalmus, for Comparative Analysis of Genes Relevant to Development An
Kim et al. BMC Genomics (2018) 19:733 https://doi.org/10.1186/s12864-018-5079-x RESEARCHARTICLE Open Access A draft genome of the striped catfish, Pangasianodon hypophthalmus, for comparative analysis of genes relevant to development and a resource for aquaculture improvement Oanh T. P. Kim1*† , Phuong T. Nguyen1†, Eiichi Shoguchi2†, Kanako Hisata2, Thuy T. B. Vo1, Jun Inoue2, Chuya Shinzato2,4, Binh T. N. Le1, Koki Nishitsuji2, Miyuki Kanda3, Vu H. Nguyen1, Hai V. Nong1 and Noriyuki Satoh2* Abstract Background: The striped catfish, Pangasianodon hypophthalmus, is a freshwater and benthopelagic fish common in the Mekong River delta. Catfish constitute a valuable source of dietary protein. Therefore, they are cultured worldwide, and P. hypophthalmus is a food staple in the Mekong area. However, genetic information about the culture stock, is unavailable for breeding improvement, although genetics of the channel catfish, Ictalurus punctatus, has been reported. Toacquiregenomesequencedataasausefulresourcefor marker-assisted breeding, we decoded a draft genome of P. hypophthalmus and performed comparative analyses. Results: Using the Illumina platform, we obtained both nuclear and mitochondrial DNA sequences. Molecular phylogeny using the mitochondrial genome confirmed that P. hypophthalmus is a member of the family Pangasiidae and is nested within a clade including the families Cranoglanididae and Ictaluridae. The nuclear genome was estimated at approximately 700 Mb, assembled into 568 scaffolds with an N50 of 14.29 Mbp, and was estimated to contain ~ 28,600 protein-coding genes, comparable to those of channel catfish and zebrafish. Interestingly, zebrafish produce gadusol, but genes for biosynthesis of this sunscreen compound have been lost from catfish genomes. -
Archaeological Perspective of the Bananal Island, Brazil
Archaeological Perspective of the Bananal Island, Brazil Julio Cezar Rubin De Rubin∗y1, Rosicl´erTheodoro Da Silva , Maira Barberi3,2, and Joanne Ester Ribeiro Freitas 1PUC Goi´as(Goi´as){ R. 235, 722 - Setor Leste Universit´ario,Goi^ania- GO, 74605-050, Br´esil 3Julio Cezar Rubin de Rubin (JCRR) { Av. Universit´aria1440 Setor Universit´arioGoi^aniaGO, Br´esil 2Rosicler Theodoro da Silva (RTS) { Av. University´aria1440 Setor Universit´arioGoi^aniaGoi´as,Br´esil R´esum´e The archaeology of the Brazilian Central Plateau presents little information regarding the occupation of the area in the late Pleistocene and early Holocene. We highlight the re- search carried out in Santa Elina, Abrigo-do-Sol and Serran´opolis. Some areas present great potential for archaeological research in this period based on geology, geomorphology and the presence of archaeological sites, among them the Quaternary Fluvial Basin of the Ba- nanal (QFBB), the intracratonic basin that forms part of the Araguaia river basin (medium Araguaia) , resulting from denudational processes and covering an area of approximately 106,000km2. In the north of the basin is the Bananal Island, which occupies an area of 20,000 km2 (approximately twice the area of the Republic of Cyprus) encompassing the Araguaia National Park and the Araguaia Indigenous Area. In the BFQB, there are deposi- tional units inserted in the Middle Pleistocene (240,000 +/- 29,000 and 159,600 +/- 18,542 years BP), in the Upper Pleistocene (121,000 +/- 15,000 and 17,200 +/- 2,300 years BP) and in the Holocene (9,800 +/- 1,100 years BP). These units present records of paleohydro- logical and paleoclimatic changes. -
Efeitos Das Mudanças De Uso Da Terra No Regime Hidrológico De Bacias De Grande Escala
Universidade Federal do Rio Grande do Sul Instituto de Pesquisas Hidráulicas Pós-Graduação em Recursos Hídricos e Saneamento Ambiental Efeitos das mudanças de uso da terra no regime hidrológico de bacias de grande escala Débora Missio Bayer Tese de Doutorado Porto Alegre - RS Fevereiro de 2014 Universidade Federal do Rio Grande do Sul Instituto de Pesquisas Hidráulicas Débora Missio Bayer Efeitos das mudanças de uso da terra no regime hidrológico de bacias de grande escala Trabalho apresentado ao Programa de Pós-Graduação em Recursos Hídricos e Saneamento Ambiental do Instituto de Pesquisas Hidráulicas da Universidade Federal do Rio Grande do Sul como requisito para obtenção do grau de Doutor em Recursos Hídricos e Saneamento Ambiental. Orientador: Prof. Dr. Walter Collischonn Porto Alegre - RS Fevereiro de 2014 Agradecimentos Inicialmente gostaria de agradecer ao professor Walter Collischonn, pela orientação, pelos ensinamentos, pela disponibilidade e, principalmente, por sua contagiante empolgação em relação a fazer pesquisa e ciência. Gostaria de agradecer aos membros da banca, professores Eduardo Mario Mendiondo, Anderson Luís Ruhoff e André Luiz Lopes da Silveira, pelas contribuições e sugestões ao trabalho. Em especial, gostaria de agradecer ao também colega e amigo Anderson, que além de contribuir como membro da banca, me auxiliou durante várias etapas do trabalho. Sou grata à Universidade Federal do Rio Grande do Sul, onde desenvolvi o trabalho, no Instituto de Pesquisas Hidráulicas (IPH-UFRGS), no Programa de Pós-Graduação em Re- cursos Hídricos e Saneamento Ambiental, onde incluo todos os professores, pesquisadores, funcionários e colegas. Devo reconhecer o Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq), pela bolsa de doutorado, sem a qual não poderia ter desenvolvido a pesquisa com dedicação exclusiva. -
Summary Report of Freshwater Nonindigenous Aquatic Species in U.S
Summary Report of Freshwater Nonindigenous Aquatic Species in U.S. Fish and Wildlife Service Region 4—An Update April 2013 Prepared by: Pam L. Fuller, Amy J. Benson, and Matthew J. Cannister U.S. Geological Survey Southeast Ecological Science Center Gainesville, Florida Prepared for: U.S. Fish and Wildlife Service Southeast Region Atlanta, Georgia Cover Photos: Silver Carp, Hypophthalmichthys molitrix – Auburn University Giant Applesnail, Pomacea maculata – David Knott Straightedge Crayfish, Procambarus hayi – U.S. Forest Service i Table of Contents Table of Contents ...................................................................................................................................... ii List of Figures ............................................................................................................................................ v List of Tables ............................................................................................................................................ vi INTRODUCTION ............................................................................................................................................. 1 Overview of Region 4 Introductions Since 2000 ....................................................................................... 1 Format of Species Accounts ...................................................................................................................... 2 Explanation of Maps ................................................................................................................................ -
(Monogenea: Dactylogyridae) and a Redescription of D
Journal of Helminthology (2018) 92, 228–243 doi:10.1017/S0022149X17000256 © Cambridge University Press 2017 Morphology and molecular characterization of Demidospermus spirophallus n. sp., D. prolixus n. sp. (Monogenea: Dactylogyridae) and a redescription of D. anus in siluriform catfish from Brazil L. Franceschini1*, A.C. Zago1, M.I. Müller1, C.J. Francisco1, R.M. Takemoto2 and R.J. da Silva1 1São Paulo State University (Unesp), Institute of Biosciences, Botucatu, Brazil, CEP 18618-689: 2State University of Maringá (UEM), Limnology, Ichthyology and Aquaculture Research Center (Nupélia), Maringá, Brazil, CEP 87020-900 (Received 29 September 2016; Accepted 26 February 2017; First published online 6 April 2017) Abstract The present study describes Demidospermus spirophallus n. sp. and Demidosper- mus prolixus n. sp. (Monogenea, Dactylogyridae) from the siluriform catfish Loricaria prolixa Isbrücker & Nijssen, 1978 (Siluriformes, Loricariidae) from the state of São Paulo, Brazil, supported by morphological and molecular data. In add- ition, notes on the circumscription of the genus with a redescription of Demisdospermus anus are presented. Demidospermus spirophallus n. sp. differed from other congeners mainly because of the morphology of the male copulatory organ (MCO), which exhibited 2½ counterclockwise rings, a tubular accessory piece with one bifurcated end and a weakly sclerotized vagina with sinistral open- ing. Demidospermus prolixus n. sp. presents a counterclockwise-coiled MCO with 1½ rings, an ovate base, a non-articulated groove-like accessory piece serving as an MCO guide, two different hook shapes, inconspicuous tegumental annulations, a non-sclerotized vagina with sinistral opening and the absence of eyes or acces- sory eyespots. The present study provides, for the first time, molecular character- ization data using the partial ribosomal gene (28S) of two new species of Demidospermus from Brazil (D. -
State of the Amazon: Freshwater Connectivity and Ecosystem Health WWF LIVING AMAZON INITIATIVE SUGGESTED CITATION
REPORT LIVING AMAZON 2015 State of the Amazon: Freshwater Connectivity and Ecosystem Health WWF LIVING AMAZON INITIATIVE SUGGESTED CITATION Macedo, M. and L. Castello. 2015. State of the Amazon: Freshwater Connectivity and Ecosystem Health; edited by D. Oliveira, C. C. Maretti and S. Charity. Brasília, Brazil: WWF Living Amazon Initiative. 136pp. PUBLICATION INFORMATION State of the Amazon Series editors: Cláudio C. Maretti, Denise Oliveira and Sandra Charity. This publication State of the Amazon: Freshwater Connectivity and Ecosystem Health: Publication editors: Denise Oliveira, Cláudio C. Maretti, and Sandra Charity. Publication text editors: Sandra Charity and Denise Oliveira. Core Scientific Report (chapters 1-6): Written by Marcia Macedo and Leandro Castello; scientific assessment commissioned by WWF Living Amazon Initiative (LAI). State of the Amazon: Conclusions and Recommendations (chapter 7): Cláudio C. Maretti, Marcia Macedo, Leandro Castello, Sandra Charity, Denise Oliveira, André S. Dias, Tarsicio Granizo, Karen Lawrence WWF Living Amazon Integrated Approaches for a More Sustainable Development in the Pan-Amazon Freshwater Connectivity Cláudio C. Maretti; Sandra Charity; Denise Oliveira; Tarsicio Granizo; André S. Dias; and Karen Lawrence. Maps: Paul Lefebvre/Woods Hole Research Center (WHRC); Valderli Piontekwoski/Amazon Environmental Research Institute (IPAM, Portuguese acronym); and Landscape Ecology Lab /WWF Brazil. Photos: Adriano Gambarini; André Bärtschi; Brent Stirton/Getty Images; Denise Oliveira; Edison Caetano; and Ecosystem Health Fernando Pelicice; Gleilson Miranda/Funai; Juvenal Pereira; Kevin Schafer/naturepl.com; María del Pilar Ramírez; Mark Sabaj Perez; Michel Roggo; Omar Rocha; Paulo Brando; Roger Leguen; Zig Koch. Front cover Mouth of the Teles Pires and Juruena rivers forming the Tapajós River, on the borders of Mato Grosso, Amazonas and Pará states, Brazil. -
(Pangasianodon Hypophthalmus) Ponds
Journal of Aquaculture & Marine Biology Research Article Open Access Sources of off-flavor in pangasius catfish (Pangasianodon hypophthalmus) ponds Abstract Volume 10 Issue 3 - 2021 With the intensification of aquaculture system, off-flavor in cultured pangasius catfish Atiar Rahman,1 Mohammed Nurul Absar (Pangasianodon hypophthalmus) has become a problem in Bangladesh, resulting in poor 2 1 1 acceptability and reduced market price. Since water quality parameters and sediment have Khan, Kamal, Shaheed Reza 1Department of Fisheries Technology, Bangladesh Agricultural greater implications on fish quality, studies were undertaken to identify potential off-flavor University, Bangladesh agents by investigating water temperature, dissolved oxygen (DO) pH, phytoplankton 2Department of Fishing and Post-Harvest Technology, diversity and sediment organic carbon in 3 randomly selected ponds of 3upazilain Chattogram Veterinary and Animal Sciences University, Mymensingh district viz., Sadar, Trishal and Muktagachha. Water temperature and DO Bangladesh was found to be significantly different in ponds of Trishalupazila along with significantly high sediment organic carbon (p<0.05). Correspondingly, the Algal Genus Pollution Index Correspondence: Shaheed Reza, Department of (AGPI) estimated to study the water quality revealed that ponds in this upazila has the highest Fisheries Technology, Bangladesh Agricultural University, organic nutrient level (25.33±3.21). These values, along with strong positive correlation of Mymensingh-2202, Bangladesh, Fax +880 91 61510, cyanobacteria abundance and water temperature, sediment organic carbonindicate higher Email risk of off-flavor production in pond water. Adoption of proper management strategies need to taken immediately so that off-flavor producing organisms can be minimized. This Received: April 29, 2021 | Published: August 04, 2021 will ensure higher acceptability of pangasius catfish produced in this region and safeguard livelihoods of the fish producers. -
Journal of Environmental Biology a Study on Induced Breeding
Journal Home page : www.jeb.co.in « E-mail : [email protected] Original Research TM Journal of Environmental Biology JEBTM p-ISSN: 0254-8704 DOI : http://doi.org/10.22438/jeb/39/5/MRN-767 e-ISSN: 2394-0379 CODEN: JEBIDP A study on induced breeding, embryonic and larval development of Pangasianodon hypophthalmus in semi-arid agro-climate White Smoke Just write. PDlagiarism etector Abstract Authors Info S.N. Datta*, A. Singh, Aim : Breeding performance ofPangasianodon hypophthalmus in semi-arid agro-climatic conditions of G. Jassal and A. Pandey northern India was evaluated in view of establishing hatchery to supply its seed. College of Fisheries, Guru Methodology : P.hypophthalmus were induced to breed using carp pituitary gland (PG) extract. Females Angad Dev Veterinary and were administered with priming dose of 2.5 - 3.0 mg kg-1 ; after 6 hrs, a second resolving dose of 10-12 mg Animal Sciences University, kg-1 was given, while males were administered with single dose of 2.5–3.0 mg kg-1 body weight. Eggs were Ludhiana–141 004, India dry fertilized after 14 hrs of second injection. The fertilized eggs were allowed to incubate in a circular hatchery maintaining a water flow of 30 l min-1 . Embryonic and larval developments were assessed by observing eggs at regular interval under a microscope. Optimum water quality parameters were maintained during entire experiment period. Results : The average fecundity was 57.5 lakh kg-1 of body while fertilization and hatching percentage was 76.50 and 58.20, respectively. After fertilization, eggs became water hardened within 20 min. -
Discrimination Analysis of Hybrid Pangasianodon Hypophthalmus (Sauvage, 1983) (♀) × Pangasius Nasutus (♂) (Bleeker, 1976) and Its Parental Species
Journal of Survey in Fisheries Sciences 5(2) 49-63 2019 Discrimination analysis of hybrid Pangasianodon hypophthalmus (Sauvage, 1983) (♀) × Pangasius nasutus (♂) (Bleeker, 1976) and its parental species Mohamed Yusoff S.F.1; Christianus A.1,2*; Ismail M.F.S.1 ; Esa Y.1 ; Hassan M.D.3 ; Hamid. N.H.3; Siti Nadia A.B.3; Zulkifle M.S. 2 Received: November 2018 Accepted: January 2019 Abstract Comparative analysis was performed to discriminate a hybrid produced from the crossbreed of Pangasianodon hypophthalmus (♀) and Pangasius nasutus (♂) and its parental species based on morphology appearances and morphometric characters. Morphological structures of the vomerin and palatal teeth varied between the hybrid and both parents. Results of the univariate analysis revealed 22 morphometric characters were significantly different between the hybrid and its parental species. Under the stepwise discriminate function analysis, the first Function explained 86.10% of total variations and 13.90% in Function 2. Of the 30 characters, only 10 characters which include prepelvic, caudal peduncle length, dorsal fin length, pectoral fin length, anal fin height, anal fin length, adipose fin length, interorbital length, distant to isthmus, and predorsal length can be used to significantly differentiate these species. The predicted fish groups exhibited characters which 100% differentiate and validate them into their respective group. Examination on vomerin and palatal teeth distinct the hybrid and its parental species. Keywords: Discriminate function analysis, morphometric, Pangasianodon hypophthalmus, Pangasius nasutus, hybrid 1- Department Aquaculture, Faculty of Agriculture, 2- Institute of Bioscience, 3- Aquatic Animal Health Unit, Faculty of Veterinary Medicine, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor Darul Ehsan, Malaysia. -
Infinity of Nations: Art and History in the Collections of the National Museum of the American Indian
Infinity of Nations: Art and History in the Collections of the National Museum of the American Indian Exhibition Checklist: Kuna Kantule hat Darién Province, Panama Headdresses ca. 1924 Palm leaves, macaw and harpy feathers, reed, cotton Assiniboine antelope-horn headdress cord Saskatchewan, Canada 12/9169 ca. 1850 Antelope horn, deer hide, porcupine quills, feathers, Mapuche head ornament horsehair red wool, brass bells, glass beads Trumpulo Chico, Chile 10/8302 ca. 1975 Wool, ostrich feathers 25/9039 Miccosukee Seminole turban Florida Haida frontlet headdress ca. 1930 Prince of Wales Islands, British Columbia Cotton, silver, ostrich feathers, hide ca. 1850 20/4363 Ermine, wood, haliotis shell, sea lion whiskers, wool, cotton Yup'ik hunting hat 10/4581 Yukon River, Alaska ca. 1870 Wood, ivory, baleen, iron alloy, cordage Patagonia 10/6921 Mapuche machi’s rewe pole Tiwanaku four-cornered hat Collico, Chile Chimbote, Peru ca. 1920 A.D. 600–1000 Wood Alpaca wool, dye 17/5773 22/3722 Diaguita vessel Mebêngôkre krokrokti (feather headdress or cape) Temuco, Chile Brazil A.D. 1500s ca. 1990 Clay, paint Macaw feathers, heron feathers, cotton cordage 17/7543 25/4893 Mapuche breast ornament Yoeme deer dance headdress Chile Sonora, Mexico ca. 1925 ca. 1910 Silver Deer hide, glass eyes, antlers 23/147 11/2382 Diaguita bowl Elqui Province, Chile Karuk headdress A.D. 950–1450 California Clay, paint ca. 1910 17/5128 Deer hide, woodpecker and bluejay feathers 20/9651 1 Infinity of Nations: Art and History in the Collections of the National Museum of the American Indian Early Mapuche whistle Enxet pipe Quitratúe, Chile Paraguay A.D. -
BRAZIL's “BATTLE for RUBBER” of WORLD WAR II a Dissertation
TAPPING THE AMAZON FOR VICTORY: BRAZIL’S “BATTLE FOR RUBBER” OF WORLD WAR II A dissertation Submitted to the Faculty of the Graduate School of Arts and Sciences Of Georgetown University In partial fulfillment of the requirements for the Degree of Doctor of Philosophy In History By Xenia Vunovic Wilkinson, M.A. Washington D.C. December 2, 2009 Copyright 2009 by Xenia Vunovic Wilkinson All Rights Reserved ii TAPPING THE AMAZON FOR VICTORY: BRAZIL’S “BATTLE FOR RUBBER” OF WORLD WAR II Xenia Vunovic Wilkinson Dissertation Adviser: Erick D. Langer, PhD. ABSTRACT Japan’s occupation of Southeast Asia in early 1942 cut off more than 90 percent of the global rubber supply to the World War II Allies. Without an adequate supply of this strategic material to meet military-industrial requirements, it was impossible to win the war. The Roosevelt Administration concluded that the success of the Allied war effort could depend on increasing the productivity of rubber tappers who extracted latex from rubber trees dispersed throughout Amazonian rainforests. In response to Roosevelt’s appeal, Brazil’s President, Getúlio Vargas, organized a “Battle for Rubber” to increase rubber production in the Amazon. The authoritarian Brazilian government recruited around 30,000 “rubber soldiers,” mainly from the arid Northeast, and sent them to work on Amazonian rubber estates. This study explores the dynamics of global, national, and regional actors as they converged and interacted with Amazonian society in the Battle for Rubber. Migrant rubber tappers, Amazonian rubber elites, indigenous groups, North American technical advisers, Brazilian government agencies, and the Roosevelt Administration were linked in a wartime enterprise to increase rubber production. -
A Critical Assessment of the JULES Land Surface Model Hydrology For
Discussion Paper | Discussion Paper | Discussion Paper | Discussion Paper | Hydrol. Earth Syst. Sci. Discuss., 9, 12523–12561, 2012 Hydrology and www.hydrol-earth-syst-sci-discuss.net/9/12523/2012/ Earth System doi:10.5194/hessd-9-12523-2012 Sciences © Author(s) 2012. CC Attribution 3.0 License. Discussions This discussion paper is/has been under review for the journal Hydrology and Earth System Sciences (HESS). Please refer to the corresponding final paper in HESS if available. A critical assessment of the JULES land surface model hydrology for humid tropical environments Z. Zulkafli1, W. Buytaert1,2, C. Onof1, W. Lavado3, and J. L. Guyot4 1Department of Civil and Environmental Engineering, Imperial College London, London, UK 2Grantham Institute for Climate Change, Imperial College London, London, UK 3Servicio Nacional de Meteorolog´ıa e Hidrologa´ (SENAMHI), Lima, Peru 4IRD – Institut de recherche pour le developpement,´ Lima, Peru Received: 14 October 2012 – Accepted: 20 October 2012 – Published: 5 November 2012 Correspondence to: Z. Zulkafli (z.zulkafl[email protected]) Published by Copernicus Publications on behalf of the European Geosciences Union. 12523 Discussion Paper | Discussion Paper | Discussion Paper | Discussion Paper | Abstract Global land surface models (LSMs) such as the Joint UK Land Environment Simulator (JULES) are originally developed to provide surface boundary conditions for climate models. They are increasingly used for hydrological simulation, for instance to simulate 5 the impacts of land-use changes and other perturbations on the water cycle. This study investigates how well such models represent the major hydrological fluxes at the rele- vant spatial and temporal scales – an important question for reliable model applications in poorly understood, data-scarce environments.