Fauna of Australia 2A
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The Impact of Anchored Phylogenomics and Taxon Sampling on Phylogenetic Inference in Narrow-Mouthed Frogs (Anura, Microhylidae)
Cladistics Cladistics (2015) 1–28 10.1111/cla.12118 The impact of anchored phylogenomics and taxon sampling on phylogenetic inference in narrow-mouthed frogs (Anura, Microhylidae) Pedro L.V. Pelosoa,b,*, Darrel R. Frosta, Stephen J. Richardsc, Miguel T. Rodriguesd, Stephen Donnellane, Masafumi Matsuif, Cristopher J. Raxworthya, S.D. Bijug, Emily Moriarty Lemmonh, Alan R. Lemmoni and Ward C. Wheelerj aDivision of Vertebrate Zoology (Herpetology), American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA; bRichard Gilder Graduate School, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA; cHerpetology Department, South Australian Museum, North Terrace, Adelaide, SA 5000, Australia; dDepartamento de Zoologia, Instituto de Biociencias,^ Universidade de Sao~ Paulo, Rua do Matao,~ Trav. 14, n 321, Cidade Universitaria, Caixa Postal 11461, CEP 05422-970, Sao~ Paulo, Sao~ Paulo, Brazil; eCentre for Evolutionary Biology and Biodiversity, The University of Adelaide, Adelaide, SA 5005, Australia; fGraduate School of Human and Environmental Studies, Kyoto University, Sakyo-ku, Kyoto 606-8501, Japan; gSystematics Lab, Department of Environmental Studies, University of Delhi, Delhi 110 007, India; hDepartment of Biological Science, Florida State University, Tallahassee, FL 32306, USA; iDepartment of Scientific Computing, Florida State University, Dirac Science Library, Tallahassee, FL 32306-4120, USA; jDivision of Invertebrate Zoology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA Accepted 4 February 2015 Abstract Despite considerable progress in unravelling the phylogenetic relationships of microhylid frogs, relationships among subfami- lies remain largely unstable and many genera are not demonstrably monophyletic. -
FROGS in an EFFLUENT SOCIETY Risks, Remedies and Responsibilities by Dr Sara Broomhall First Published in June 2004 by WWF Australia © WWF Australia 2004
FROGS IN AN EFFLUENT SOCIETY Risks, Remedies and Responsibilities by Dr Sara Broomhall First published in June 2004 by WWF Australia © WWF Australia 2004. All Rights Reserved. ISBN: 1 875941 67 3 Author: Dr Sara Broomhall WWF Australia GPO Box 528 Sydney NSW Australia Tel: +612 9281 5515 Fax: +612 9281 1060 www.wwf.org.au For copies of this booklet or a full list of WWF Australia publications on a wide range of conservation issues, please contact us on [email protected] or call 1800 032 551. The opinions expressed in this publication are those of the authors and do not necessarily reflect the views of WWF. Special thanks to Craig Cleeland for supplying the photographs for this booklet. CONTENTS FROGS AS ENVIRONMENTAL BAROMETERS The aim of this booklet is to help What is a pollutant? 2 you understand: Australian frogs 2 How do frogs interact with their environment? 3 What pollutants are – Life stages 3 – Habitat requirements 3 How frogs interact with their environment – Ecological position 3 – Frogs and pollutants in the food chain 3 Why water pollution affects frogs Why is environmental pollution a frog issue? 3 – Are frogs more sensitive to environmental pollutants than other species? 3 Where pollutants come from and how they enter the environment WHAT WE DO AND DON’T KNOW Why don’t we have all the answers? 4 How you may be polluting water – How relevant are these toxicity tests to real world situations anyway? 4 Categories of pollutants (such as pesticides) Where do pollutants come from? 4 How many chemicals do we use here in Australia? -
A Review of Chemical Defense in Poison Frogs (Dendrobatidae): Ecology, Pharmacokinetics, and Autoresistance
Chapter 21 A Review of Chemical Defense in Poison Frogs (Dendrobatidae): Ecology, Pharmacokinetics, and Autoresistance Juan C. Santos , Rebecca D. Tarvin , and Lauren A. O’Connell 21.1 Introduction Chemical defense has evolved multiple times in nearly every major group of life, from snakes and insects to bacteria and plants (Mebs 2002 ). However, among land vertebrates, chemical defenses are restricted to a few monophyletic groups (i.e., clades). Most of these are amphibians and snakes, but a few rare origins (e.g., Pitohui birds) have stimulated research on acquired chemical defenses (Dumbacher et al. 1992 ). Selective pressures that lead to defense are usually associated with an organ- ism’s limited ability to escape predation or conspicuous behaviors and phenotypes that increase detectability by predators (e.g., diurnality or mating calls) (Speed and Ruxton 2005 ). Defended organisms frequently evolve warning signals to advertise their defense, a phenomenon known as aposematism (Mappes et al. 2005 ). Warning signals such as conspicuous coloration unambiguously inform predators that there will be a substantial cost if they proceed with attack or consumption of the defended prey (Mappes et al. 2005 ). However, aposematism is likely more complex than the simple pairing of signal and defense, encompassing a series of traits (i.e., the apose- matic syndrome) that alter morphology, physiology, and behavior (Mappes and J. C. Santos (*) Department of Zoology, Biodiversity Research Centre , University of British Columbia , #4200-6270 University Blvd , Vancouver , BC , Canada , V6T 1Z4 e-mail: [email protected] R. D. Tarvin University of Texas at Austin , 2415 Speedway Stop C0990 , Austin , TX 78712 , USA e-mail: [email protected] L. -
Anura:Microhylidae
THE PHYLOGENY OF THE PAPUAN SUBFAIÏILY ASTEROPHRYINAE (ANURA: MICROHYLIDAE) by THO¡1IAS CHARLES BURTON, 8.4., B.Sc. (Hons)MeIb. Department of Zoology University of Adelaide A thesis submitted to the UniVersity of Adelaide for the degree of Doctor of PhilosoPhY JT'NE 1.9 8 3 To ChwLø SUMMARY THE PHYLOGENY OF THE PAPUAN SUBFAMILY ASTEROPHRYINAE (nruunR : MI cRoHyt-rrRE) The Asterophryinae is a subfamily of terrestrial and fossorial microhylid frogs restricted to the Papuan Sub- Region. It comprises 43 named species and subspecies in seven genera. A second microhylid subfamily, the Sphenophryninae, also occurs in the Papuan Sub-Region, and its relationship to the Asterophryinae is contentious- In this study I undertake a phylogenetic analysis of the Asterophryinae based on the results of an examination of the myology, osteology and external morphology of members of all of the genera, and also of members of the Sphenophryninae, other microhylid. subfamilies and the Ranoidea, which serve as out-groups at different levels of analysis. The Asterophryinae and Sphenophryninae form a monophyletic group (sensu Hennig, 19661 supported by two autapomorphies: (a) direct embryonic development within the egg capsule; and (b) fusion and enlargement of the palatine and prevomer. The monophyly of the Asterophryinae is supported by three autapomorphies: (a) posterior adherence of the tongue and its division into anterior and posterior sections; (b) fusion of elements of the mandible and displacement of the mentomeckelians from the anterior margin of the mandible; and (c) loss of a dorsal el-ement J-aa of the M. intermandíbuLaris. The monophyly of the Sphenophryninae is supported by only one character of dubious value: procoely of the vertebral column. -
ARAZPA Amphibian Action Plan
Appendix 1 to Murray, K., Skerratt, L., Marantelli, G., Berger, L., Hunter, D., Mahony, M. and Hines, H. 2011. Guidelines for minimising disease risks associated with captive breeding, raising and restocking programs for Australian frogs. A report for the Australian Government Department of Sustainability, Environment, Water, Population and Communities. ARAZPA Amphibian Action Plan Compiled by: Graeme Gillespie, Director Wildlife Conservation and Science, Zoos Victoria; Russel Traher, Amphibian TAG Convenor, Curator Healesville Sanctuary Chris Banks, Wildlife Conservation and Science, Zoos Victoria. February 2007 1 1. Background Amphibian species across the world have declined at an alarming rate in recent decades. According to the IUCN at least 122 species have gone extinct since 1980 and nearly one third of the world’s near 6,000 amphibian species are classified as threatened with extinction, placing the entire class at the core of the current biodiversity crisis (IUCN, 2006). Australasia too has experienced significant declines; several Australian species are considered extinct and nearly 25% of the remainder are threatened with extinction, while all four species native to New Zealand are threatened. Conventional causes of biodiversity loss, habitat destruction and invasive species, are playing a major role in these declines. However, emergent disease and climate change are strongly implicated in many declines and extinctions. These factors are now acting globally, rapidly and, most disturbingly, in protected and near pristine areas. Whilst habitat conservation and mitigation of threats in situ are essential, for many taxa the requirement for some sort of ex situ intervention is mounting. In response to this crisis there have been a series of meetings organised by the IUCN (World Conservation Union), WAZA (World Association of Zoos & Aquariums) and CBSG (Conservation Breeding Specialist Group, of the IUCN Species Survival Commission) around the world to discuss how the zoo community can and should respond. -
Catalogue of Protozoan Parasites Recorded in Australia Peter J. O
1 CATALOGUE OF PROTOZOAN PARASITES RECORDED IN AUSTRALIA PETER J. O’DONOGHUE & ROBERT D. ADLARD O’Donoghue, P.J. & Adlard, R.D. 2000 02 29: Catalogue of protozoan parasites recorded in Australia. Memoirs of the Queensland Museum 45(1):1-164. Brisbane. ISSN 0079-8835. Published reports of protozoan species from Australian animals have been compiled into a host- parasite checklist, a parasite-host checklist and a cross-referenced bibliography. Protozoa listed include parasites, commensals and symbionts but free-living species have been excluded. Over 590 protozoan species are listed including amoebae, flagellates, ciliates and ‘sporozoa’ (the latter comprising apicomplexans, microsporans, myxozoans, haplosporidians and paramyxeans). Organisms are recorded in association with some 520 hosts including mammals, marsupials, birds, reptiles, amphibians, fish and invertebrates. Information has been abstracted from over 1,270 scientific publications predating 1999 and all records include taxonomic authorities, synonyms, common names, sites of infection within hosts and geographic locations. Protozoa, parasite checklist, host checklist, bibliography, Australia. Peter J. O’Donoghue, Department of Microbiology and Parasitology, The University of Queensland, St Lucia 4072, Australia; Robert D. Adlard, Protozoa Section, Queensland Museum, PO Box 3300, South Brisbane 4101, Australia; 31 January 2000. CONTENTS the literature for reports relevant to contemporary studies. Such problems could be avoided if all previous HOST-PARASITE CHECKLIST 5 records were consolidated into a single database. Most Mammals 5 researchers currently avail themselves of various Reptiles 21 electronic database and abstracting services but none Amphibians 26 include literature published earlier than 1985 and not all Birds 34 journal titles are covered in their databases. Fish 44 Invertebrates 54 Several catalogues of parasites in Australian PARASITE-HOST CHECKLIST 63 hosts have previously been published. -
Chapter 10. Amphibians of the Palaearctic Realm
CHAPTER 10. AMPHIBIANS OF THE PALAEARCTIC REALM Figure 1. Summary of Red List categories Brandon Anthony, J.W. Arntzen, Sherif Baha El Din, Wolfgang Böhme, Dan Palaearctic Realm contains 6% of all globally threatened amphibians. The Palaearctic accounts for amphibians in the Palaearctic Realm. CogĄlniceanu, Jelka Crnobrnja-Isailovic, Pierre-André Crochet, Claudia Corti, for only 3% of CR species and 5% of the EN species, but 9% of the VU species. Hence, on the The percentage of species in each category Richard Griffiths, Yoshio Kaneko, Sergei Kuzmin, Michael Wai Neng Lau, basis of current knowledge, threatened Palaearctic amphibians are more likely to be in a lower is also given. Pipeng Li, Petros Lymberakis, Rafael Marquez, Theodore Papenfuss, Juan category of threat, when compared with the global distribution of threatened species amongst Manuel Pleguezuelos, Nasrullah Rastegar, Benedikt Schmidt, Tahar Slimani, categories. The percentage of DD species, 13% (62 species), is also much less than the global Max Sparreboom, ùsmail Uøurtaû, Yehudah Werner and Feng Xie average of 23%, which is not surprising given that parts of the region have been well surveyed. Red List Category Number of species Nevertheless, the percentage of DD species is much higher than in the Nearctic. Extinct (EX) 2 Two of the world’s 34 documented amphibian extinctions have occurred in this region: the Extinct in the Wild (EW) 0 THE GEOGRAPHIC AND HUMAN CONTEXT Hula Painted Frog Discoglossus nigriventer from Israel and the Yunnan Lake Newt Cynops Critically Endangered (CR) 13 wolterstorffi from around Kunming Lake in Yunnan Province, China. In addition, one Critically Endangered (EN) 40 The Palaearctic Realm includes northern Africa, all of Europe, and much of Asia, excluding Endangered species in the Palaearctic Realm is considered possibly extinct, Scutiger macu- Vulnerable (VU) 58 the southern extremities of the Arabian Peninsula, the Indian Subcontinent (south of the latus from central China. -
3Systematics and Diversity of Extant Amphibians
Systematics and Diversity of 3 Extant Amphibians he three extant lissamphibian lineages (hereafter amples of classic systematics papers. We present widely referred to by the more common term amphibians) used common names of groups in addition to scientifi c Tare descendants of a common ancestor that lived names, noting also that herpetologists colloquially refer during (or soon after) the Late Carboniferous. Since the to most clades by their scientifi c name (e.g., ranids, am- three lineages diverged, each has evolved unique fea- bystomatids, typhlonectids). tures that defi ne the group; however, salamanders, frogs, A total of 7,303 species of amphibians are recognized and caecelians also share many traits that are evidence and new species—primarily tropical frogs and salaman- of their common ancestry. Two of the most defi nitive of ders—continue to be described. Frogs are far more di- these traits are: verse than salamanders and caecelians combined; more than 6,400 (~88%) of extant amphibian species are frogs, 1. Nearly all amphibians have complex life histories. almost 25% of which have been described in the past Most species undergo metamorphosis from an 15 years. Salamanders comprise more than 660 species, aquatic larva to a terrestrial adult, and even spe- and there are 200 species of caecilians. Amphibian diver- cies that lay terrestrial eggs require moist nest sity is not evenly distributed within families. For example, sites to prevent desiccation. Thus, regardless of more than 65% of extant salamanders are in the family the habitat of the adult, all species of amphibians Plethodontidae, and more than 50% of all frogs are in just are fundamentally tied to water. -
Global Diversity of Amphibians (Amphibia) in Freshwater
Hydrobiologia (2008) 595:569–580 DOI 10.1007/s10750-007-9032-2 FRESHWATER ANIMAL DIVERSITY ASSESSMENT Global diversity of amphibians (Amphibia) in freshwater Miguel Vences Æ Jo¨rn Ko¨hler Ó Springer Science+Business Media B.V. 2007 Abstract This article present a review of species amphibians is very high, with only six out of 348 numbers, biogeographic patterns and evolutionary aquatic genera occurring in more than one of the major trends of amphibians in freshwater. Although most biogeographic divisions used herein. Global declines amphibians live in freshwater in at least their larval threatening amphibians are known to be triggered by phase, many species have evolved different degrees of an emerging infectious fungal disease and possibly by independence from water including direct terrestrial climate change, emphasizing the need of concerted development and viviparity. Of a total of 5,828 conservation efforts, and of more research, focused on amphibian species considered here, 4,117 are aquatic both their terrestrial and aquatic stages. in that they live in the water during at least one life- history stage, and a further 177 species are water- Keywords Amphibia Á Anura Á Urodela Á dependent. These numbers are tentative and provide a Gymnophiona Á Species diversity Á Evolutionary conservative estimate, because (1) the biology of many trends Á Aquatic species Á Biogeography Á Threats species is unknown, (2) more direct-developing spe- cies e.g. in the Brachycephalidae, probably depend directly on moisture near water bodies and (3) the Introduction accelerating rate of species discoveries and descrip- tions in amphibians indicates the existence of many Amphibians are a textbook example of organisms more, yet undescribed species, most of which are living at the interface between terrestrial and aquatic likely to have aquatic larvae. -
Describing Species
DESCRIBING SPECIES Practical Taxonomic Procedure for Biologists Judith E. Winston COLUMBIA UNIVERSITY PRESS NEW YORK Columbia University Press Publishers Since 1893 New York Chichester, West Sussex Copyright © 1999 Columbia University Press All rights reserved Library of Congress Cataloging-in-Publication Data © Winston, Judith E. Describing species : practical taxonomic procedure for biologists / Judith E. Winston, p. cm. Includes bibliographical references and index. ISBN 0-231-06824-7 (alk. paper)—0-231-06825-5 (pbk.: alk. paper) 1. Biology—Classification. 2. Species. I. Title. QH83.W57 1999 570'.1'2—dc21 99-14019 Casebound editions of Columbia University Press books are printed on permanent and durable acid-free paper. Printed in the United States of America c 10 98765432 p 10 98765432 The Far Side by Gary Larson "I'm one of those species they describe as 'awkward on land." Gary Larson cartoon celebrates species description, an important and still unfinished aspect of taxonomy. THE FAR SIDE © 1988 FARWORKS, INC. Used by permission. All rights reserved. Universal Press Syndicate DESCRIBING SPECIES For my daughter, Eliza, who has grown up (andput up) with this book Contents List of Illustrations xiii List of Tables xvii Preface xix Part One: Introduction 1 CHAPTER 1. INTRODUCTION 3 Describing the Living World 3 Why Is Species Description Necessary? 4 How New Species Are Described 8 Scope and Organization of This Book 12 The Pleasures of Systematics 14 Sources CHAPTER 2. BIOLOGICAL NOMENCLATURE 19 Humans as Taxonomists 19 Biological Nomenclature 21 Folk Taxonomy 23 Binomial Nomenclature 25 Development of Codes of Nomenclature 26 The Current Codes of Nomenclature 50 Future of the Codes 36 Sources 39 Part Two: Recognizing Species 41 CHAPTER 3. -
Anura: Microhylidae)
Herpetology Notes, volume 14: 657-660 (2021) (published online on 12 April 2021) Notes on the breeding behaviour of Elachistocleis helianneae Caramaschi, 2010 (Anura: Microhylidae) Jackson Cleiton Sousa and Carlos Eduardo Costa-Campos* The neotropical microhylid genus Elachistocleis Amplexus lasted about two hours (10:37–12:37 h) and Parker, 1927 comprises 19 species, distributed included five ovipositions in a single event. The female laid throughout the Neotropics from Panama to central approximately 30 eggs in each oviposition that floated on Argentina (Frost, 2020). Members of this genus are the water surface. Uninterrupted video was recorded for 2 terrestrial, active during both day and night, and usually h with a Sony HDR-CX 440 Full HD camera positioned found in lowland ecosystems and swampy open areas 1 m from the amplexed couple, using headlamps with red (Lima et al., 2012; Frost, 2020). However, there are still filters to minimize disturbance. We analysed 87 min of many species of microhylid for which basic aspects of recording until the oviposition was interrupted. The video their reproductive biology are unknown (e.g., Rodrigues recording was deposited at Fonoteca Neotropical Jacques et al., 2003; Thomé and Brasileiro, 2007; Altig and Vielliard (ZUEC-VID 790). Rowley, 2014; Pombal and Cruz, 2016; Elgue and After 2 h of recording, the couple remained in Maneyro, 2017). amplexus without further oviposition activity. The frogs Elachistocleis helianneae Caramaschi, 2010 is a and five of the clutches were collected and placed in small-sized frog (snout-vent length of 22.6–28.7 mm in plastic bags containing water; inside the plastic bag, the males, 29.3–36.4 mm in females) that is distributed in female continued to oviposit. -
La Collezione Erpetologica Del Museo Civico Di Storia Naturale “G. Doria” Di Genova the Herpetological Collection of the Museo Civico Di Storia Naturale “G
MUSEOLOGIA SCIENTIFICA MEMORIE • N. 5/2010 • 62-68 Le collezioni erpetologiche dei Musei italiani The herpetological collections of italian museums Stefano Mazzotti (ed.) La collezione erpetologica del Museo Civico di Storia Naturale “G. Doria” di Genova The herpetological collection of the Museo Civico di Storia Naturale “G. Doria” of Genoa Giuliano Doria Museo Civico di Storia Naturale “G. Doria”, Via Brigata Liguria 9. I-16121 Genova. E-mail: [email protected] RIASSUNTO Il primo nucleo della collezione erpetologica del Museo Civico di Storia Naturale “Giacomo Doria” di Genova è costituito dalle raccolte effettuate da Giacomo Doria, fondatore del Museo, nella zona di La Spezia, in Persia (oggi Iran) e in Borneo (insieme a Odoardo Beccari) negli anni 1862-1868. Successivamente la collezione viene incrementata col materiale di numerose spedizioni condotte in tutti i conti - nenti; i risultati di tali raccolte sono stati spesso pubblicati sugli “Annali” del Museo. Nella collezione sono pre - senti 593 specie di Anfibi e 1.456 di Rettili; 171 taxa, attualmente validi, sono rappresentati da tipi. Parole chiave: Anfibi, Rettili, Museo di Genova, annali, tipi. ABSTRACT The first nucleus of the herpetological collection of the Museo Civico di Storia Naturale “Giacomo Doria” (Italy, Genoa) was made up of the specimens collected in the years 1862-1868 near La Spezia (Italy, Liguria), in Persia (now Iran) and in Borneo (with Odoardo Beccari) by its founder, Giacomo Doria. Later, it was increased with thousands of specimens collected during several expeditions throughout all the continents. Many important studies about this rich material have been published in “Annali”, the museum’s journal.