Data Sheet on Cowpea Mild Mottle 'Carlavirus'
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Autographa Gamma
1 Table of Contents Table of Contents Authors, Reviewers, Draft Log 4 Introduction to the Reference 6 Soybean Background 11 Arthropods 14 Primary Pests of Soybean (Full Pest Datasheet) 14 Adoretus sinicus ............................................................................................................. 14 Autographa gamma ....................................................................................................... 26 Chrysodeixis chalcites ................................................................................................... 36 Cydia fabivora ................................................................................................................. 49 Diabrotica speciosa ........................................................................................................ 55 Helicoverpa armigera..................................................................................................... 65 Leguminivora glycinivorella .......................................................................................... 80 Mamestra brassicae....................................................................................................... 85 Spodoptera littoralis ....................................................................................................... 94 Spodoptera litura .......................................................................................................... 106 Secondary Pests of Soybean (Truncated Pest Datasheet) 118 Adoxophyes orana ...................................................................................................... -
P. Lava Kumar, A. T. Jones and F. Waliyar
Methods Manual Edited by P. Lava Kumar, A. T. Jones and F. Waliyar Virology and Mycotoxin Diagnostics Laboratory International Crops Research Institute for the Semi-Arid Tropics © International Crops Research Institute for the Semi-Arid Tropics, 2004 AUTHORS P. LAVA KUMAR Special Project Scientist – Virology Virology and Mycotoxin Diagnostics ICRISAT, Patancheru 502 324, India e-mail: [email protected] A. T. JONES Senior Principal Virologist Scottish Crop Research Institute (SCRI) Invergowrie Dundee DD2 5DA Scotland, United Kingdom e-mail: [email protected] FARID WALIYAR Principal Scientist and Global Theme Leader – Biotechnology ICRISAT, Patancheru 502 324, India e-mail: [email protected] Material from this manual may be reproduced for the research use providing the source is acknowledged as: KUMAR, P.L., JONES, A. T. and WALIYAR, F. (Eds) (2004). Serological and nucleic acid based methods for the detection of plant viruses. International Crops Research Institute for the Semi-Arid Tropics, Patancheru 502 324, India. FOR FURTHER INFORMATION: International Crops Research Institute for the Semi-Arid Tropics (ICRISAT) Patancheru - 502 324, Andhra Pradesh, India Telephone: +91 (0) 40 23296161 Fax: +91 (0) 40 23241239 +91 (0) 40 23296182 Web site: http://www.icrisat.org Cover photo: Purified particles of PoLV-PP (©Kumar et al., 2001) This publication is an output from the United Kingdom Department for International Development (DFID) Crop Protection Programme for the benefit of developing countries. Views expressed are not necessarily those of DFID. Manual designed by P Lava Kumar Serological and Nucleic Acid Based Methods for the Detection of Plant Viruses Edited by P. -
Recovery Plan for Cowpea Mild Mottle Virus, a Seedborne Carlavirus (?) Judith K. Brown School of Plant Sciences University of A
Recovery Plan for Cowpea mild mottle virus, a seedborne carla-like virus Judith K. Brown School of Plant Sciences University of Arizona, Tucson and Jose Carlos Verle Rodrigues University of Puerto Rico, San Juan NPDRS meeting APS, Minneapolis-Saint Paul, MN August 10, 2014 Cowpea mild mottle virus (CpMMV) Origin (endemism): Africa: Kenya (1957), Ghana (1973)* Host: groundnut Arachis hypogaea L (1957, 1997, Sudan) cowpea Vigna unguiculata L. (1973) Distribution: now, worldwide in all legume growing locales (27+ documented) but importance in soybean unrealized until recently. Transmission •Whitefly-transmitted in non-persistent manner; Bemisia tabaci (Genn.) sibling species group (Muniyappa, 1983) AAP 10 min, IAP 5 min •Mechanically transmissible, experimentally •Seed borne to varying extents in different species and varieties of same species; particularly severe in certain soybean varieties. *often cited as the first report because the disease went largely unnoticed until then Likely multiple strains, but largely uninvestigated Synonyms: Groundnut crinkle (Dubern and Dollet, 1981) Psophocarpus necrotic mosaic (Fortuner et al., 1979) Voandzeia mosaic (Fauquet and Thouvenel, 1987) in the Cote d'Ivoire, tomato pale chlorosis in Israel (Cohen & Antignus, 1982) Tomato fuzzy vein in Nigeria (Brunt & Phillips, 1981) Bean angular mosaic virus in Brazil (Costa et al., 1983; Gaspar et al., 1985) shown to be serologically most closely related to CPMMV = proposed, distinct strains Isolates from solanaceous hosts in Jordan and Israel, although very similar to West African and Indian legume isolates, considered to be distinct strains – more information needed to confirm and differentiate (Menzel et al., 2010). Wide variation in virulence of CPMMV isolates from other countries also reported (Anno-Nyako, 1984, 1986, 1987; Siviprasad and Sreenivasulu, 1996). -
Cowpea Mild Mottle Virus Infecting Soybean Crops in Northwestern Argentina
Cowpea mild mottle virus Infecting Soybean Crops in Northwestern Argentina Irma G. Laguna, Joel D. Arneodo, Patricia Rodríguez-Pardina & Magdalena Fiorona Instituto de Fitopatología y Fisiología Vegetal, Instituto Nacional de Tecnología Agropecuaria - INTA, Camino 60 Cuadras km 5½, X5020ICA Córdoba, Argentina, e-mail:[email protected] (Accepted for publication on 20/01/2006) Corresponding autor: Irma G. Laguna RESUMO Cowpea mild mottle virus infectando soja no noroeste da Argentina Relata-se a ocorrência natural do Cowpea mild mottle virus (CPMMV, gênero Carlavirus) em culturas de soja [Glycine max (L.) Merr.] na província de Salta (noroeste argentino). Argentina is one of the leading soybean producing observed in samples from asymptomatic soybeans. On and exporting countries in the world. During the 2004/2005 this basis, plants were tested for Cowpea mild mottle virus cropping season, soybean production reached a record (CPMMV, genus Carlavirus) by DAS-ELISA. Leaf samples �8.� million tons. Although soybean is grown mainly in were ground in extraction buffer (PBS pH 6.8 + 0.05% Tween the central Pampas, it is also cultivated in the northwest 20 + 2% polyvinyl pyrrolidone) at a 1:5 (w/v) dilution. of the country, where it plays a significant role in the local Specific polyclonal antisera (DSMZ GmbH, Germany) were economy. Among the biotic factors affecting soybean used. Positive (supplied by DSMZ) and negative (healthy yields in this region, fungal diseases account for the major soybean) controls were included on each microtitre plate. economic losses (Wrather et al., Plant Dis. 81:107. 1997). After incubation with p-nitrophenyl phosphate at room Nevertheless, diseases of viral etiology have also been temperature for 1 h, A405nm values greater than 0.�00 were recorded. -
Evidence That Whitefly-Transmitted Cowpea Mild Mottle Virus Belongs To
Arch Virol (1998) 143: 769–780 Evidence that whitefly-transmitted cowpea mild mottle virus belongs to the genus Carlavirus 1 2 2 2; 1 R. A. Naidu ,S.Gowda , T. Satyanarayana , V. Boyko ∗, A. S. Reddy , W. O. Dawson2, and D. V. R. Reddy1 1Crop Protection Division, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, India 2Citrus Research and Education Center (CREC), University of Florida, Lake Alfred, Florida, U.S.A. Accepted October 7,1997 Summary. Two strains of whitefly-transmitted cowpea mild mottle virus (CP- MMV) causing severe (CPMMV-S) and mild (CPMMV-M) disease symptoms in peanuts were collected from two distinct agro-ecological zones in India. The host-range of these strains was restricted to Leguminosae and Chenopodiaceae, and each could be distinguished on the basis of symptoms incited in different hosts. The 30-terminal 2500 nucleotide sequence of the genomic RNA of both the strains was 70% identical and contains five open reading frames (ORFs). The first three (P25, P12 and P7) overlap to form a triple gene block of proteins, P32 en- codes the coat protein, followed by P12 protein located at the 30 end of the genome. Genome organization and pair-wise comparisons of amino acid sequences of pro- teins encoded by these ORFs with corresponding proteins of known carlaviruses and potexviruses suggest that CPMMV-S and CPMMV-M are closely related to viruses in the genus Carlavirus. Based on the data, it is concluded that CPMMV is a distinct species in the genus Carlavirus. Introduction Cowpea mild mottle virus (CPMMV) was first reported on cowpea in Ghana [3]. -
Discovery of a Novel Member of the Carlavirus Genus from Soybean (Glycine Max L
pathogens Communication Discovery of a Novel Member of the Carlavirus Genus from Soybean (Glycine max L. Merr.) Thanuja Thekke-Veetil 1 , Nancy K. McCoppin 2, Houston A. Hobbs 1, Glen L. Hartman 1,2 , Kris N. Lambert 1, Hyoun-Sub Lim 3 and Leslie. L. Domier 1,2,* 1 Department of Crop Sciences, University of Illinois, Urbana, IL 61801, USA; [email protected] (T.T.-V.); [email protected] (H.A.H.); [email protected] (G.L.H.); [email protected] (K.N.L.) 2 Soybean/Maize Germplasm, Pathology, and Genetics Research Unit, United States Department of Agriculture-Agricultural Research Service, Urbana, IL 61801, USA; [email protected] 3 Department of Applied Biology, College of Agriculture and Life Sciences, Chungnam National University, Daejeon 305-764, Korea; [email protected] * Correspondence: [email protected]; Tel.: +1-217-333-0510 Abstract: A novel member of the Carlavirus genus, provisionally named soybean carlavirus 1 (SCV1), was discovered by RNA-seq analysis of randomly collected soybean leaves in Illinois, USA. The SCV1 genome contains six open reading frames that encode a viral replicase, triple gene block proteins, a coat protein (CP) and a nucleic acid binding protein. The proteins showed highest amino acid sequence identities with the corresponding proteins of red clover carlavirus A (RCCVA). The predicted amino acid sequence of the SCV1 replicase was only 60.6% identical with the replicase of RCCVA, which is below the demarcation criteria for a new species in the family Betaflexiviridae. The Citation: Thekke-Veetil, T.; predicted replicase and CP amino acid sequences of four SCV1 isolates grouped phylogenetically McCoppin, N.K.; Hobbs, H.A.; with those of members of the Carlavirus genus in the family Betaflexiviridae. -
Serological and RT-PCR Detection of Cowpea Mild Mottle Carlavirus Infecting Soybean
Journal of General and Molecular Virology Vol.1 (1), pp. 007-011, June, 2009 Available online at http://www.academicjournals.org/JGMV © 2009 Academic Journals Full Length Research Paper Serological and RT-PCR detection of cowpea mild mottle carlavirus infecting soybean 1 2 1 M. Tavasoli , N. Shahraeen and SH. Ghorbani 1Division of Microbiology, College of Science, Alzahra University, Tehran, Iran. 2Plant Virus Research Department, Iranian Research Institute for Plant Protection (IRIPP), Tehran, P.O. Box- 19395- 1454, Iran Accepted 8 April, 2009 During 2006-2007 growing seasons, survey was carried to identify a disease of possible viral etiology causing mosaic of soybean in the soybean field. Leaf samples showing symptoms of mild mosaic were collected from soybean fields in Dezful region (Khozestan province, Southern Iran). Electron microscopy, DAS-ELISA serological tests and RT-PCR assays with specific pairs of primers were applied to identify and determine the viral etiology of the agent. Flexuous particles of ca. 15 x 650 nm were present in the leaf dip preparations examined by electron microscopy. On the basis of serology, RT-PCR assays and reaction of indicator host plants, the causal virus of these mild mosaic symptoms on soybean in the Southern Iran was identified as Cowpea mild mottle virus- CPMMV, a whitefly- transmitted carlavirus. Key words: Cowpea mild mottle virus, serology, RT-PCR, detection, Southern Iran INTRODUCTION As soybean (Glycine max (L.) Merril) cultivation increases ported to be transmitted by the whitefly, Bemisia tabaci in Iran (106000 ha in 2005) (Anonymous 2005) occur- (Homoptera: Aleyrodidae), in a non-persistent manner rence of virus and virus-like diseases can limit production (Jeyanandarajah and Brunt, 1993; Memelink et al., 1990). -
Transmission of the Bean-Associated Cytorhabdovirus by the Whitefly
viruses Article Transmission of the Bean-Associated Cytorhabdovirus by the Whitefly Bemisia tabaci MEAM1 Bruna Pinheiro-Lima 1,2,3, Rita C. Pereira-Carvalho 2, Dione M. T. Alves-Freitas 1 , Elliot W. Kitajima 4, Andreza H. Vidal 1,3, Cristiano Lacorte 1, Marcio T. Godinho 1, Rafaela S. Fontenele 5, Josias C. Faria 6 , Emanuel F. M. Abreu 1, Arvind Varsani 5,7 , Simone G. Ribeiro 1,* and Fernando L. Melo 2,3,* 1 Embrapa Recursos Genéticos e Biotecnologia, Brasília DF 70770-017, Brazil; [email protected] (B.P.-L.); [email protected] (D.M.T.A.-F.); [email protected] (A.H.V.); [email protected] (C.L.); [email protected] (M.T.G.); [email protected] (E.F.M.A.) 2 Departamento de Fitopatologia, Instituto de Biologia, Universidade de Brasília, Brasília DF 70275-970, Brazil; [email protected] 3 Departamento de Biologia Celular, Instituto de Biologia, Universidade de Brasília, Brasília DF 70275-970, Brazil 4 Departamento de Fitopatologia, Escola Superior de Agricultura Luiz de Queiroz, Piracicaba SP 13418-900, Brazil; [email protected] 5 The Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine School of Life Sciences, Arizona State University, Tempe, AZ 85287-5001, USA; [email protected] (R.S.F.); [email protected] (A.V.) 6 Embrapa Arroz e Feijão, Goiânia GO 75375-000, Brazil; [email protected] 7 Structural Biology Research Unit, Department of Integrative Biomedical Sciences, University of Cape Town, Observatory, Cape Town 7701, South Africa * Correspondence: [email protected] (S.G.R.); fl[email protected] (F.L.M.) Received: 4 August 2020; Accepted: 11 September 2020; Published: 15 September 2020 Abstract: The knowledge of genomic data of new plant viruses is increasing exponentially; however, some aspects of their biology, such as vectors and host range, remain mostly unknown. -
First Report of Cowpea Mild Mottle Carlavirus on Yardlong Bean (Vigna Unguiculata Subsp
Viruses 2012, 4, 3804-3811; doi:10.3390/v4123804 OPEN ACCESS viruses ISSN 1999-4915 www.mdpi.com/journal/viruses Article First Report of Cowpea Mild Mottle Carlavirus on Yardlong Bean (Vigna unguiculata subsp. sesquipedalis) in Venezuela Miriam Brito 1, Thaly Fernández-Rodríguez 2,†, Mario José Garrido 1, Alexander Mejías 2, Mirtha Romano 2 and Edgloris Marys 2,* 1 Vegetal Virology and Phytopathogenic Bacteria Laboratory, Institute of Agricultural Botany, Agronomy Faculty, Central University of Venezuela, ZIP 4579, Maracay 2101-A, Venezuela; E-Mails: [email protected] (M.B.); [email protected] (M.J.G.) 2 Biotechnology and Plant Virology Laboratory, Center for Microbiology and Cell Biology, Venezuelan Institute for Scientific Research (IVIC), ZIP 20632, Caracas 1020-A, Venezuela; E-Mails: [email protected] (T.F.-R.); [email protected] (A.M.); [email protected] (M.R.) † Current Address: RLP AgroScience GmbH, AlPlanta-Institute for Plant Research, Breitenweg 71, D 67435 Neustadt, Germany. * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.:+58-212-5041-500; Fax: +58-212-5041-382. Received: 4 November 2012; in revised form: 6 December 2012 / Accepted: 11 December 2012 / Published: 14 December 2012 Abstract: Yardlong bean (Vigna unguiculata subsp. sesquipedalis) plants with virus-like systemic mottling and leaf distortion were observed in both experimental and commercial fields in Aragua State, Venezuela. Symptomatic leaves were shown to contain carlavirus-like particles. RT-PCR analysis with carlavirus-specific primers was positive in all tested samples. Nucleotide sequences of the obtained amplicons showed 84%–74% similarity to corresponding sequences of Cowpea mild mottle virus (CPMMV) isolates deposited in the GenBank database. -
A Abutilon Mosaic Virus (Abmv), 8, 78 ACLSV. See Apple Chlorotic
Index A Array technologies, 137, 256 Abutilon mosaic virus (AbMV), 8, 78 Artichoke Italian latent, 11, 59 ACLSV. See Apple chlorotic leaf spot virus (ACLSV) Artichoke latent, 11, 60 Aegilops, spp., 11 Artichoke yellow ring spot, 11, 59 Agarose gel electrophoresis, 134–135, 293 Aseptic plantlet culture, 252–253 Agropyron elongatum,11 Asparagus bean mosaic virus,11 Alfalfa cryptic virus (ACV), 5, 91 Asparagus latent, 11, 59 Alfalfa mosaic virus (AMV), 68, 69, 76, 90, 91, 107, 109, Asparagus officinalis, 11, 252 140, 141, 169, 173, 175, 203, 244, 261–264, 288 Asparagus stunt, 28, 59 Alfalfa temperate, 10, 57 Asparagus virus I (AV1), 11, 60 Alfamo virus,63 Asparagus virus II (AV2), 11, 59 Alliaria petiolata,29 Assessment of crop losses, 67–69 Allium cepa, 19, 21, 174 Atriplex pacifica,25 Alphacryptovirus,57 Aureusvirus,57 Alphaflexiviridae,60 Australian Lucerne latent, 11, 59 Aluminum mulches for vector control, 196, 197 Avena fatua,11 Amaranthus albus,10 Avena sativa, 21, 192 Amaranthus caudatus,15 Avocado sun-blotch, 6, 11, 57, 104, 132, 286 Amaranthus hybridus, 15, 27, 168, 169 Avocado viruses 1–3, 11, 57 Amaranthus viridis,26 Avoidance of virus inoculum from infected seeds, AMV. See Alfalfa mosaic virus (AMV) 186–189 Andean potato latent virus (APLV), 18, 61, 169, 288 Avoiding of continuous cropping, 189–190 Antisense RNA, 259, 264–265, 311 Avoid spread from finished crops, 314 Antiviral activities in plants, 259, 265–266 Avoid spread from ornamental plants, 314 Anulavirus,57 Avoid spread within seedlings trays, 314 Aphid vectors, 8, 70, -
Recovery Plan Contents
Recovery Plan Cowpea mild mottle virus Carlavirus: Betaflexiviridae; order Tymovirales Judith K. Brown School of Plant Sciences University of Arizona 1140 E. South Campus Dr. Tucson, AZ 85721 USA Email: [email protected] Jose Carlos Verle Rodrigues Center for Excellence in Quarantine & Invasive Species University of Puerto Rico 1193 Calle Guayacan San Juan PR 00926 Email: [email protected] December 15, 2014 (Revised December 20, 2017) Contents Executive Summary and Contributors 3 Introduction 3 Symptoms 5 Biology, Spread, and Risk 6 Identification of CPPMV Strains, Detection, and Monitoring 7 Response 9 USDA Pathogen Permits and Regulations 9 Economic Impact and Compensation 10 Mitigation and Disease Management 11 Current Infrastructure, Needs, and Experts 13 Research, Education, and Extension 14 References Cited or Consulted 15 Figures and Tables 19 This recovery plan is one of several disease-specific documents produced as part of the National Plant Disease Recovery System (NPDRS) called for in Homeland Security Presidential Directive Number 9 (HSPD-9). The purpose of the NPDRS is to insure that the tools, infrastructure, communication networks, and capacity required to mitigate the impact of high consequence plant disease outbreaks are such that a reasonable level of crop production is maintained. Each disease-specific plan is intended to provide a brief primer on the disease, assess the status of critical recovery components, and identify disease management research, extension and education needs. These documents are not intended to be stand-alone documents that address all of the many and varied aspects of plant disease outbreak and all of the decisions that must be made and actions taken to achieve effective response and recovery. -
Genetic Diversity of Cowpea Mild Mottle Irus on Soybean in Several Region in Indonesia
Genetic Diversity of Cowpea Mild Mottle Irus on Soybean in Several Region in Indonesia Mimi Sutrawati1, Sri Hendrastuti Hidayat2, Bonny Purnomo Wahyu Sukarno2, Gede Suastika2 and Ali Nurmansyah2 1University of Bengkulu, WR Supratman Street, Bengkulu, Indonesia 2Bogor Agricultural University, Bogor, Indonesia Keywords: DAS-ELISA, homology, nucleotide sequencing, PCR, phylogeny Abstract: Soybean is one of the most important food commodities in Indonesia. Virus infection on soybean has been reported worldwide as factors affecting yield loss. This study was aimed to detect Cowpea mild mottle virus (CPMMV) from several soybean cultivation areas in Java, Sumatra and Southeast Sulawesi; and further characterize their genetic variation based on nucleotide sequences of their coat protein. Several virus infection was detected using double antibody sandwhich enzyme-linked immunosorbent assay (DAS- ELISA),including CPMMV, Cucumber mosaic virus (CMV), and Soybean mosaic virus (SMV). Generally, the symptoms caused by CPMMV, CMV, and SMV are similar, involving mottle, rugose, and vein banding. Coat protein gene of 5 CPMMV isolates (Bantul, Musi Banyuasin, Cirebon, Kendari, Cianjur) was successfully amplified and cloned. Sequence of this 5 clones of CPMMV showed high similarity, ranging from 88.2 to 99.8%; whereas their sequence homology to those of Taiwan and China ranging from 88.2 to 98.6%. Phylogenetic analysis showed different clusters of CPMMV Indonesian isolates: isolates from Bantul,Cirebon, Musi Banyuasin (Palembang) is clustered with Taiwan isolate (JX020701); isolate from Cianjur is clustered with China isolate (KX534092); isolate from Kendari is clustered with Puerto Rico (GU191840),Brazil (KC884247), and USA (KC774020) isolates. 1 INTRODUCTION between 15.5-53.4% and a decrease in soybean seed weight between 11.5-51.6% and a decrease in seed Several types of viruses reported to infect soybean quality cause an abnormal seed shape of 7.6-54.35% plants are Alfalfa mosaic virus (AlMV), Bean (Akin 2003).