Opportunities and Challenges of Entomopathogenic Nematodes As Biocontrol Agents in Their Tripartite Interactions Tarique H
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Identification of Photorhabdus Symbionts by MALDI-TOF Mass Spectrometry
bioRxiv preprint doi: https://doi.org/10.1101/2020.01.10.901900; this version posted January 11, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Identification of Photorhabdus symbionts by MALDI-TOF mass spectrometry Virginia Hill1,2, Peter Kuhnert2, Matthias Erb1, Ricardo A. R. Machado1* 1 Institute of Plant Sciences, University of Bern, Switzerland 2Institute of Veterinary Bacteriology, Vetsuisse Faculty, University of Bern, Switzerland. *Correspondence: [email protected] Abstract Species of the bacterial genus Photorhabus live in a symbiotic relationship with Heterorhabditis entomopathogenic nematodes. Besides their use as biological control agents against agricultural pests, some Photorhabdus species are also a source of natural products and are of medical interest due to their ability to cause tissue infections and subcutaneous lesions in humans. Given the diversity of Photorhabdus species, rapid and reliable methods to resolve this genus to the species level are needed. In this study, we evaluated the potential of matrix-assisted laser desorption/ionization time-of flight mass spectrometry (MALDI-TOF MS) for the identification of Photorhabdus species. To this end, we established a collection of 55 isolates consisting of type strains and multiple field strains that belong to each of the validly described species and subspecies of this genus. Reference spectra for the strains were generated and used to complement a currently available database. The extended reference database was then used for identification based on the direct transfer and protein fingerprint of single colonies. -
The Louse Fly-Arsenophonus Arthropodicus Association
THE LOUSE FLY-ARSENOPHONUS ARTHROPODICUS ASSOCIATION: DEVELOPMENT OF A NEW MODEL SYSTEM FOR THE STUDY OF INSECT-BACTERIAL ENDOSYMBIOSES by Kari Lyn Smith A dissertation submitted to the faculty of The University of Utah in partial fulfillment of the requirements for the degree of Doctor of Philosophy Department of Biology The University of Utah August 2012 Copyright © Kari Lyn Smith 2012 All Rights Reserved The University of Utah Graduate School STATEMENT OF DISSERTATION APPROVAL The dissertation of Kari Lyn Smith has been approved by the following supervisory committee members: Colin Dale Chair June 18, 2012 Date Approved Dale Clayton Member June 18, 2012 Date Approved Maria-Denise Dearing Member June 18, 2012 Date Approved Jon Seger Member June 18, 2012 Date Approved Robert Weiss Member June 18, 2012 Date Approved and by Neil Vickers Chair of the Department of __________________________Biology and by Charles A. Wight, Dean of The Graduate School. ABSTRACT There are many bacteria that associate with insects in a mutualistic manner and offer their hosts distinct fitness advantages, and thus have likely played an important role in shaping the ecology and evolution of insects. Therefore, there is much interest in understanding how these relationships are initiated and maintained and the molecular mechanisms involved in this process, as well as interest in developing symbionts as platforms for paratransgenesis to combat disease transmission by insect hosts. However, this research has been hampered by having only a limited number of systems to work with, due to the difficulties in isolating and modifying bacterial symbionts in the lab. In this dissertation, I present my work in developing a recently described insect-bacterial symbiosis, that of the louse fly, Pseudolynchia canariensis, and its bacterial symbiont, Candidatus Arsenophonus arthropodicus, into a new model system with which to investigate the mechanisms and evolution of symbiosis. -
Recent Advances and Perspectives in Nasonia Wasps
Disentangling a Holobiont – Recent Advances and Perspectives in Nasonia Wasps The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Dittmer, Jessica, Edward J. van Opstal, J. Dylan Shropshire, Seth R. Bordenstein, Gregory D. D. Hurst, and Robert M. Brucker. 2016. “Disentangling a Holobiont – Recent Advances and Perspectives in Nasonia Wasps.” Frontiers in Microbiology 7 (1): 1478. doi:10.3389/ fmicb.2016.01478. http://dx.doi.org/10.3389/fmicb.2016.01478. Published Version doi:10.3389/fmicb.2016.01478 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:29408381 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA fmicb-07-01478 September 21, 2016 Time: 14:13 # 1 REVIEW published: 23 September 2016 doi: 10.3389/fmicb.2016.01478 Disentangling a Holobiont – Recent Advances and Perspectives in Nasonia Wasps Jessica Dittmer1, Edward J. van Opstal2, J. Dylan Shropshire2, Seth R. Bordenstein2,3, Gregory D. D. Hurst4 and Robert M. Brucker1* 1 Rowland Institute at Harvard, Harvard University, Cambridge, MA, USA, 2 Department of Biological Sciences, Vanderbilt University, Nashville, TN, USA, 3 Department of Pathology, Microbiology, and Immunology, Vanderbilt University, Nashville, TN, USA, 4 Institute of Integrative Biology, University of Liverpool, Liverpool, UK The parasitoid wasp genus Nasonia (Hymenoptera: Chalcidoidea) is a well-established model organism for insect development, evolutionary genetics, speciation, and symbiosis. -
Comparison of Xenorhabdus Bovienii Bacterial Strain Genomes Reveals Diversity in Symbiotic Functions Kristen E
Murfin et al. BMC Genomics (2015) 16:889 DOI 10.1186/s12864-015-2000-8 RESEARCH ARTICLE Open Access Comparison of Xenorhabdus bovienii bacterial strain genomes reveals diversity in symbiotic functions Kristen E. Murfin1, Amy C. Whooley1, Jonathan L. Klassen2 and Heidi Goodrich-Blair1* Abstract Background: Xenorhabdus bacteria engage in a beneficial symbiosis with Steinernema nematodes, in part by providing activities that help kill and degrade insect hosts for nutrition. Xenorhabdus strains (members of a single species) can display wide variation in host-interaction phenotypes and genetic potential indicating that strains may differ in their encoded symbiosis factors, including secreted metabolites. Methods: To discern strain-level variation among symbiosis factors, and facilitate the identification of novel compounds, we performed a comparative analysis of the genomes of 10 Xenorhabdus bovienii bacterial strains. Results: The analyzed X. bovienii draft genomes are broadly similar in structure (e.g. size, GC content, number of coding sequences). Genome content analysis revealed that general classes of putative host-microbe interaction functions, such as secretion systems and toxin classes, were identified in all bacterial strains. In contrast, we observed diversity of individual genes within families (e.g. non-ribosomal peptide synthetase clusters and insecticidal toxin components), indicating the specific molecules secreted by each strain can vary. Additionally, phenotypic analysis indicates that regulation of activities (e.g. enzymes and motility) differs among strains. Conclusions: The analyses presented here demonstrate that while general mechanisms by which X. bovienii bacterial strains interact with their invertebrate hosts are similar, the specific molecules mediating these interactions differ. Our data support that adaptation of individual bacterial strains to distinct hosts or niches has occurred. -
Assessing the Pathogenicity of Two Bacteria Isolated from the Entomopathogenic Nematode Heterorhabditis Indica Against Galleria Mellonella and Some Pest Insects
insects Article Assessing the Pathogenicity of Two Bacteria Isolated from the Entomopathogenic Nematode Heterorhabditis indica against Galleria mellonella and Some Pest Insects Rosalba Salgado-Morales 1,2 , Fernando Martínez-Ocampo 2 , Verónica Obregón-Barboza 2, Kathia Vilchis-Martínez 3, Alfredo Jiménez-Pérez 3 and Edgar Dantán-González 2,* 1 Doctorado en Ciencias, Instituto de Investigación en Ciencias Básicas y Aplicadas, Universidad Autónoma del Estado de Morelos, Av. Universidad 1001, Chamilpa, 62209 Cuernavaca, Morelos, Mexico; [email protected] 2 Laboratorio de Estudios Ecogenómicos, Centro de Investigación en Biotecnología, Universidad Autónoma del Estado de Morelos, Av. Universidad 1001, Chamilpa, 62209 Cuernavaca, Morelos, Mexico; [email protected] (F.M.-O.); [email protected] (V.O.-B.) 3 Centro de Desarrollo de Productos Bióticos, Instituto Politécnico Nacional, Calle Ceprobi No. 8, San Isidro, Yautepec, 62739 Morelos, Mexico; [email protected] (K.V.-M.); [email protected] (A.J.-P.) * Correspondence: [email protected]; Tel.: +52-777-329-7000 Received: 20 December 2018; Accepted: 15 March 2019; Published: 26 March 2019 Abstract: The entomopathogenic nematodes Heterorhabditis are parasites of insects and are associated with mutualist symbiosis enterobacteria of the genus Photorhabdus; these bacteria are lethal to their host insects. Heterorhabditis indica MOR03 was isolated from sugarcane soil in Morelos state, Mexico. The molecular identification of the nematode was confirmed using sequences of the ITS1-5.8S-ITS2 region and the D2/D3 expansion segment of the 28S rRNA gene. In addition, two bacteria HIM3 and NA04 strains were isolated from the entomopathogenic nematode. The genomes of both bacteria were sequenced and assembled de novo. -
Characterization and Synthesis of Selected Secondary Metabolites Produced by Xenorhabdus and Photorhabdus Spp
Characterization and Synthesis of Selected Secondary Metabolites produced by Xenorhabdus and Photorhabdus spp Dissertation zur Erlangung des Doktorgrades der Naturwissenschaften vorgelegt dem Fachbereich der Biowissenschaften (15) der Johann Wolfgang von Goethe Universität, Frankfurt a. M. von Friederike Inga Nollmann geboren am 30. 11. 1985 in Stade D30 vom Fachbereich für Biowissenschaften (15) der Johann-Wolfgan-von-Goethe-Universität als Dissertation angenommen. Dekanin: Prof. Dr. Meike Piepenbring Gutachter: Prof. Dr. Helge B. Bode Jun. Prof. Dr. Martin Grininger Datum der Disputation: 3 4 There is no answer as big as the question, there is no victory as big as the lesson, you go on and you see where your detours will take you to, there is no power like understanding. Tina Dico To my friends and my family who were neglected now and then in the process of this work but nevertheless helped to make it happen. 5 6 Acknowledgement Anybody who has been seriously engaged in scientific work of any kind realizes that over the entrance to the gates of the temple of science are written the words: “Ye must have faith.” Max Planck With these words I would like to thank all the people who were involved in this work and had to restore my faith in sciences from time to time, namely Prof. Dr. Helge B. Bode, my mentor, who gave me the opportunity to work on a quite diverse topic which never stopped being challenging. I also appreciate it that he always had the confidence in me to make it click. Jun. Prof. Dr. Martin Grininger, my second reviewer, who was willing to survey this work without hesitation. -
Comparative Phenotypic and Genomics Approaches
Comparative Phenotypic and Genomics Approaches Provide Insight into the Tripartite Symbiosis of Xenorhabdus bovienii with Steinernema Nematode and Lepidopteran Insect Hosts Item Type text; Electronic Thesis Authors McMullen, John George II Publisher The University of Arizona. Rights Copyright © is held by the author. Digital access to this material is made possible by the University Libraries, University of Arizona. Further transmission, reproduction or presentation (such as public display or performance) of protected items is prohibited except with permission of the author. Download date 25/09/2021 05:58:01 Link to Item http://hdl.handle.net/10150/596124 COMPARATIVE PHENOTYPIC AND GENOMICS APPROACHES PROVIDE INSIGHT INTO THE TRIPARTITE SYMBIOSIS OF XENORHABDUS BOVIENII WITH STEINERNEMA NEMATODE AND LEPIDOPTERAN INSECT HOSTS by John George McMullen II ____________________________ A Thesis Submitted to the Faculty of the SCHOOL OF ANIMAL AND COMPARATIVE BIOMEDICAL SCIENCES In Partial Fulfillment of the Requirements For the Degree of MASTER OF SCIENCE In the Graduate College THE UNIVERSITY OF ARIZONA 2015 STATEMENT BY AUTHOR This thesis has been submitted in partial fulfillment of requirements for an advanced degree at the University of Arizona and is deposited in the University Library to be made available to borrowers under rules of the Library. Brief quotations from this thesis are allowable without special permission, provided that an accurate acknowledgement of the source is made. Requests for permission for extended quotation from or reproduction of this manuscript in whole or in part may be granted by the head of the major department or the Dean of the Graduate College when in his or her judgment the proposed use of the material is in the interests of scholarship. -
Nematicidal Activity of Nematode-Symbiotic Bacteria Xenorhabdus Bovienii and X
ПАРАЗИТОЛОГИЯ, 2020, том 54, № 5, с. 413–422. УДК 579.64:632.651 NEMATICIDAL ACTIVITY OF NEMATODE-SYMBIOTIC BACTERIA XENORHABDUS BOVIENII AND X. NEMATOPHILA AGAINST ROOT-KNOT NEMATODE MELOIDOGYNE INCOGNITA © 2020 L. G. Danilov, V. G. Kaplin* All-Russia Institute of Plant Protection, Pushkin, Saint Petersburg, 196608 Russia * e-mail: [email protected] Received 21.06.2020 Received in revised form 18.07.2020 Accepted 30.07.2020 The lethal effects of metabolic products produced by the symbiotic bacteria Xenorhabdus bovienii from Steinernema feltiae and X. nematophila from S. carpocapsae were tested on M. incognita infec- tive juveniles (J2). Treatments had cell titers of 2.5 × 109, 1.25 × 109 and 0.63 × 109 per ml at 20 °C, 23 °C and 26 °C. Exposure periods were 15 hr, 41 hr, 65 hr and 90 hr immediately after autoclaving and at 23°C, and exposure periods of 5 hr, 26 hr, 50 hr and 74 hr after storage for 21 days at 4 °C. The effectiveness of bacterial metabolic products immediately after preparation against M. incognita (J2) depended on the titer of bacterial cells, the temperature of the culture liquid, and the duration of its exposure to nematodes. Nematicidal activity of X. bovienii metabolic products was higher than that of X. nematophila. Mortality of M. incognita J2 was 92–93 % after 90-hr exposure to X. bovienii at 20 °C and cell titers of 2.5 × 109 and 1.25 × 109; also after 65 hr exposure at 23 °C, titer of 2.5 × 109 and 95–99 % at 26 °C and all tested titers. -
(Hemiptera: Aphrophoridae) Nymphs
insects Article Insecticidal Effect of Entomopathogenic Nematodes and the Cell-Free Supernatant from Their Symbiotic Bacteria against Philaenus spumarius (Hemiptera: Aphrophoridae) Nymphs Ignacio Vicente-Díez, Rubén Blanco-Pérez, María del Mar González-Trujillo, Alicia Pou and Raquel Campos-Herrera * Instituto de Ciencias de la Vid y del Vino (CSIC, Gobierno de La Rioja, Universidad de La Rioja), 26007 Logroño, Spain; [email protected] (I.V.-D.); [email protected] (R.B.-P.); [email protected] (M.d.M.G.-T.); [email protected] (A.P.) * Correspondence: [email protected]; Tel.: +34-941-894980 (ext. 410102) Simple Summary: The disease caused by Xylella fastidiosa affects economically relevant crops such as olives, almonds, and grapevine. Since curative means are not available, its current management principally consists of broad-spectrum pesticide applications to control vectors like the meadow spittlebug Philaenus spumarius, the most important one in Europe. Exploring environmentally sound alternatives is a primary challenge for sustainable agriculture. Entomopathogenic nematodes (EPNs) are well-known biocontrol agents of soil-dwelling arthropods. Recent technological advances for Citation: Vicente-Díez, I.; field applications, including improvements in obtaining cell-free supernatants from EPN symbiotic Blanco-Pérez, R.; González-Trujillo, bacteria, allow their successful implementation against aerial pests. Here, we investigated the impact M.d.M.; Pou, A.; Campos-Herrera, R. of four EPN species and their cell-free supernatants on nymphs of the meadow spittlebug. First, Insecticidal Effect of we observed that the exposure to the foam produced by this insect does not affect the nematode Entomopathogenic Nematodes and virulence. Indeed, direct applications of certain EPN species reached up to 90–78% nymphal mortality the Cell-Free Supernatant from Their rates after five days of exposure, while specific cell-free supernatants produced 64% mortality rates. -
JOURNAL of NEMATOLOGY Article | DOI: 10.21307/Jofnem-2020-089 E2020-89 | Vol
JOURNAL OF NEMATOLOGY Article | DOI: 10.21307/jofnem-2020-089 e2020-89 | Vol. 52 Isolation, identification, and pathogenicity of Steinernema carpocapsae and its bacterial symbiont in Cauca-Colombia Esteban Neira-Monsalve1, Natalia Carolina Wilches-Ramírez1, Wilson Terán1, María del Pilar Abstract 1 Márquez , Ana Teresa In Colombia, identification of entomopathogenic nematodes (EPN’s) 2 Mosquera-Espinosa and native species is of great importance for pest management 1, Adriana Sáenz-Aponte * programs. The aim of this study was to isolate and identify EPNs 1Biología de Plantas y Sistemas and their bacterial symbiont in the department of Cauca-Colombia Productivos, Departamento de and then evaluate the susceptibility of two Hass avocado (Persea Biología, Pontificia Universidad americana) pests to the EPNs isolated. EPNs were isolated from soil Javeriana, Bogotá, Colombia. samples by the insect baiting technique. Their bacterial symbiont was isolated from hemolymph of infected Galleria mellonella larvae. 2 Departamento de Ciencias Both organisms were molecularly identified. Morphological, and Naturales y Matemáticas, biochemical cha racterization was done for the bacteria. Susceptibility Pontificia Universidad Javeriana, of Epitrix cucumeris and Pandeleteius cinereus adults was evaluated Cali, Colombia. by individually exposing adults to 50 infective juveniles. EPNs were *E-mail: adriana.saenz@javeriana. allegedly detected at two sampled sites (natural forest and coffee edu.co cultivation) in 5.8% of the samples analyzed. However, only natural forest EPN’s could be isolated and multiplied. The isolate was identified This paper was edited by as Steinernema carpocapsae BPS and its bacterial symbiont as Raquel Campos-Herrera. Xenorhabus nematophila BPS. Adults of both pests were susceptible Received for publication to S. -
Symbiont-Mediated Competition: Xenorhabdus Bovienii Confer an Advantage to Their Nematode Host Steinernema Affine by Killing Competitor Steinernema Feltiae
Environmental Microbiology (2018) doi:10.1111emi.14278 Symbiont-mediated competition: Xenorhabdus bovienii confer an advantage to their nematode host Steinernema affine by killing competitor Steinernema feltiae Kristen E. Murfin,1† Daren R. Ginete,1,2 Farrah Bashey related to S. affine, although the underlying killing 3 and Heidi Goodrich-Blair1,2* mechanisms may vary. Together, these data demon- 1Department of Bacteriology, University of Wisconsin- strate that bacterial symbionts can modulate compe- Madison, Madison, WI, 53706, USA. tition between their hosts, and reinforce specificity in 2Department of Microbiology, University of Tennessee- mutualistic interactions. Knoxville, Knoxville, TN, 37996, USA. 3 Department of Biology, Indiana University, Introduction Bloomington, IN, 47405–3700, USA. The defensive role of symbionts in the context of host disease is becoming increasingly recognized. For Summary instance, microbial symbionts within hosts can interfere Bacterial symbionts can affect several biotic interac- with invading parasites (Dillon et al., 2005; Koch and tions of their hosts, including their competition with Schmid-Hempel, 2011). Symbionts can preempt infection other species. Nematodes in the genus Steinernema by forming a protective physical barrier, drawing down utilize Xenorhabdus bacterial symbionts for insect available host resources (Donskey et al., 2000; de Roode ’ host killing and nutritional bioconversion. Here, we et al., 2005; Caragata et al., 2013), modulating the host s establish that the Xenorhabdus bovienii bacterial immune system (Lysenko et al., 2010; Hooper et al., symbiont (Xb-Sa-78) of Steinernema affine nema- 2012; Abt and Artis, 2013) or directly attacking invaders todes can impact competition between S. affine and (Jaenike et al., 2010; Hamilton et al., 2014). -
Regulating Alternative Lifestyles in Entomopathogenic Bacteria
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Current Biology 20, 69–74, January 12, 2010 ª2010 Elsevier Ltd All rights reserved DOI 10.1016/j.cub.2009.10.059 Report Regulating Alternative Lifestyles in Entomopathogenic Bacteria Jason M. Crawford,1,2 Renee Kontnik,1,2 and Jon Clardy1,* important suite of antibacterial and antifungal small molecules 1Department of Biological Chemistry and Molecular that have so far eluded characterization (Figure 1) [4]. Pharmacology, Harvard Medical School, 240 Longwood Photorhabdus luminescens TT01, the best studied of these Avenue, Boston, MA 02115, USA bacterial symbionts, has a sequenced genome containing a wide array of antibiotic synthesizing genes with at least 33 genes in 20 loci similar to those used to make nonribosomal Summary peptides and polyketides—two large families of biologically active small molecules [5]. The genome of Xenorhabdus nem- Bacteria belonging to the genera Photorhabdus and Xeno- atophila ATCC19061 has recently been sequenced, and it rhabdus participate in a trilateral symbiosis in which they appears to have a similar size and comparable number of enable their nematode hosts to parasitize insect larvae [1]. small-molecule biosynthetic genes (www.genoscope.cns.fr/ The bacteria switch from persisting peacefully in a nema- agc/mage/). The majority of these encoded molecules are tode’s digestive tract to a lifestyle in which pathways to cryptic, meaning that their existence can be inferred from the produce insecticidal toxins, degrading enzymes to digest genome but not yet confirmed in the laboratory, and analyses the insect for consumption, and antibiotics to ward off of sequenced bacterial genomes indicate that cryptic metabo- bacterial and fungal competitors are activated.