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Guide to the Flora of the Carolinas, Virginia, and Georgia, Working Draft of 17 March 2004 -- LILIACEAE
Guide to the Flora of the Carolinas, Virginia, and Georgia, Working Draft of 17 March 2004 -- LILIACEAE LILIACEAE de Jussieu 1789 (Lily Family) (also see AGAVACEAE, ALLIACEAE, ALSTROEMERIACEAE, AMARYLLIDACEAE, ASPARAGACEAE, COLCHICACEAE, HEMEROCALLIDACEAE, HOSTACEAE, HYACINTHACEAE, HYPOXIDACEAE, MELANTHIACEAE, NARTHECIACEAE, RUSCACEAE, SMILACACEAE, THEMIDACEAE, TOFIELDIACEAE) As here interpreted narrowly, the Liliaceae constitutes about 11 genera and 550 species, of the Northern Hemisphere. There has been much recent investigation and re-interpretation of evidence regarding the upper-level taxonomy of the Liliales, with strong suggestions that the broad Liliaceae recognized by Cronquist (1981) is artificial and polyphyletic. Cronquist (1993) himself concurs, at least to a degree: "we still await a comprehensive reorganization of the lilies into several families more comparable to other recognized families of angiosperms." Dahlgren & Clifford (1982) and Dahlgren, Clifford, & Yeo (1985) synthesized an early phase in the modern revolution of monocot taxonomy. Since then, additional research, especially molecular (Duvall et al. 1993, Chase et al. 1993, Bogler & Simpson 1995, and many others), has strongly validated the general lines (and many details) of Dahlgren's arrangement. The most recent synthesis (Kubitzki 1998a) is followed as the basis for familial and generic taxonomy of the lilies and their relatives (see summary below). References: Angiosperm Phylogeny Group (1998, 2003); Tamura in Kubitzki (1998a). Our “liliaceous” genera (members of orders placed in the Lilianae) are therefore divided as shown below, largely following Kubitzki (1998a) and some more recent molecular analyses. ALISMATALES TOFIELDIACEAE: Pleea, Tofieldia. LILIALES ALSTROEMERIACEAE: Alstroemeria COLCHICACEAE: Colchicum, Uvularia. LILIACEAE: Clintonia, Erythronium, Lilium, Medeola, Prosartes, Streptopus, Tricyrtis, Tulipa. MELANTHIACEAE: Amianthium, Anticlea, Chamaelirium, Helonias, Melanthium, Schoenocaulon, Stenanthium, Veratrum, Toxicoscordion, Trillium, Xerophyllum, Zigadenus. -
Outline of Angiosperm Phylogeny
Outline of angiosperm phylogeny: orders, families, and representative genera with emphasis on Oregon native plants Priscilla Spears December 2013 The following listing gives an introduction to the phylogenetic classification of the flowering plants that has emerged in recent decades, and which is based on nucleic acid sequences as well as morphological and developmental data. This listing emphasizes temperate families of the Northern Hemisphere and is meant as an overview with examples of Oregon native plants. It includes many exotic genera that are grown in Oregon as ornamentals plus other plants of interest worldwide. The genera that are Oregon natives are printed in a blue font. Genera that are exotics are shown in black, however genera in blue may also contain non-native species. Names separated by a slash are alternatives or else the nomenclature is in flux. When several genera have the same common name, the names are separated by commas. The order of the family names is from the linear listing of families in the APG III report. For further information, see the references on the last page. Basal Angiosperms (ANITA grade) Amborellales Amborellaceae, sole family, the earliest branch of flowering plants, a shrub native to New Caledonia – Amborella Nymphaeales Hydatellaceae – aquatics from Australasia, previously classified as a grass Cabombaceae (water shield – Brasenia, fanwort – Cabomba) Nymphaeaceae (water lilies – Nymphaea; pond lilies – Nuphar) Austrobaileyales Schisandraceae (wild sarsaparilla, star vine – Schisandra; Japanese -
Alphabetical Lists of the Vascular Plant Families with Their Phylogenetic
Colligo 2 (1) : 3-10 BOTANIQUE Alphabetical lists of the vascular plant families with their phylogenetic classification numbers Listes alphabétiques des familles de plantes vasculaires avec leurs numéros de classement phylogénétique FRÉDÉRIC DANET* *Mairie de Lyon, Espaces verts, Jardin botanique, Herbier, 69205 Lyon cedex 01, France - [email protected] Citation : Danet F., 2019. Alphabetical lists of the vascular plant families with their phylogenetic classification numbers. Colligo, 2(1) : 3- 10. https://perma.cc/2WFD-A2A7 KEY-WORDS Angiosperms family arrangement Summary: This paper provides, for herbarium cura- Gymnosperms Classification tors, the alphabetical lists of the recognized families Pteridophytes APG system in pteridophytes, gymnosperms and angiosperms Ferns PPG system with their phylogenetic classification numbers. Lycophytes phylogeny Herbarium MOTS-CLÉS Angiospermes rangement des familles Résumé : Cet article produit, pour les conservateurs Gymnospermes Classification d’herbier, les listes alphabétiques des familles recon- Ptéridophytes système APG nues pour les ptéridophytes, les gymnospermes et Fougères système PPG les angiospermes avec leurs numéros de classement Lycophytes phylogénie phylogénétique. Herbier Introduction These alphabetical lists have been established for the systems of A.-L de Jussieu, A.-P. de Can- The organization of herbarium collections con- dolle, Bentham & Hooker, etc. that are still used sists in arranging the specimens logically to in the management of historical herbaria find and reclassify them easily in the appro- whose original classification is voluntarily pre- priate storage units. In the vascular plant col- served. lections, commonly used methods are systema- Recent classification systems based on molecu- tic classification, alphabetical classification, or lar phylogenies have developed, and herbaria combinations of both. -
Orchids of Lakeland
a field guide to OrchidsLakeland Provincial Park, Provincial Recreation Area and surrounding region Written by: Patsy Cotterill Illustrated by: John Maywood Pub No: I/681 ISBN: 0-7785-0020-9 Printed 1998 Sepal Sepal Petal Petal Seed Sepal Lip (labellum) Ovary Finding an elusive (capsule) orchid nestled away in Sepal the boreal forest is a Scape thrilling experience for amateur and Petal experienced naturalists alike. This type Petal of recreation has become a passion for Column some and, for many others, a wonder- ful way to explore nature and learn Ovary Sepal (capsule) more about the living world around us. Sepal But, we also need to be careful when Lip (labellum) looking at these delicate plants. Be mindful of their fragile nature... keep Spur only memories and take only photo- graphs so that others, too, can enjoy. Corm OrchidsMany people are surprisedin Alberta to learn that orchids grow naturally in Alberta. Orchids are typically associated with tropical rain forests (where indeed, many do grow) or flower-shop purchases for special occasions, exotic, expensive and highly ornamental. Wild orchids in fact are found world-wide (except in Antarctica). They constitute Roots Tuber the second largest family of flowering plants (the Orchidaceae) after the Aster family, with upwards of 15,000 species. In Alberta, there are 26 native species. Like all Roots orchids from north temperate regions, these are terrestrial. They grow in the ground, in contrast to the majority of rain forest species which are epiphytes, that is, they grow attached to trees for support but do not derive nourishment from them. -
Gondwanan Origin of Major Monocot Groups Inferred from Dispersal-Vicariance Analysis Kåre Bremer Uppsala University
Aliso: A Journal of Systematic and Evolutionary Botany Volume 22 | Issue 1 Article 3 2006 Gondwanan Origin of Major Monocot Groups Inferred from Dispersal-Vicariance Analysis Kåre Bremer Uppsala University Thomas Janssen Muséum National d'Histoire Naturelle Follow this and additional works at: http://scholarship.claremont.edu/aliso Part of the Botany Commons Recommended Citation Bremer, Kåre and Janssen, Thomas (2006) "Gondwanan Origin of Major Monocot Groups Inferred from Dispersal-Vicariance Analysis," Aliso: A Journal of Systematic and Evolutionary Botany: Vol. 22: Iss. 1, Article 3. Available at: http://scholarship.claremont.edu/aliso/vol22/iss1/3 Aliso 22, pp. 22-27 © 2006, Rancho Santa Ana Botanic Garden GONDWANAN ORIGIN OF MAJOR MONO COT GROUPS INFERRED FROM DISPERSAL-VICARIANCE ANALYSIS KARE BREMERl.3 AND THOMAS JANSSEN2 lDepartment of Systematic Botany, Evolutionary Biology Centre, Norbyvagen l8D, SE-752 36 Uppsala, Sweden; 2Museum National d'Histoire Naturelle, Departement de Systematique et Evolution, USM 0602: Taxonomie et collections, 16 rue Buffon, 75005 Paris, France 3Corresponding author ([email protected]) ABSTRACT Historical biogeography of major monocot groups was investigated by biogeographical analysis of a dated phylogeny including 79 of the 81 monocot families using the Angiosperm Phylogeny Group II (APG II) classification. Five major areas were used to describe the family distributions: Eurasia, North America, South America, Africa including Madagascar, and Australasia including New Guinea, New Caledonia, and New Zealand. In order to investigate the possible correspondence with continental breakup, the tree with its terminal distributions was fitted to the geological area cladogram «Eurasia, North America), (Africa, (South America, Australasia») and to alternative area cladograms using the TreeFitter program. -
Co2 Emissions from Commercial Aviation, 2018
A40-WP/560 International Civil Aviation Organization EX/237 10/9/19 Revision No. 1 WORKING PAPER 20/9/19 (Information paper) English only ASSEMBLY — 40TH SESSION EXECUTIVE COMMITTEE Agenda Item 16: Environmental Protection – International Aviation and Climate Change — Policy and Standardization CO2 EMISSIONS FROM COMMERCIAL AVIATION, 2018 (Presented by the International Coalition for Sustainable Aviation (ICSA)) EXECUTIVE SUMMARY To better understand carbon emissions associated with commercial aviation, this paper develops a bottom-up, global aviation carbon dioxide (CO2) inventory for calendar year 2018. Using historical data from an aviation operations data provider, national governments, international agencies, and aircraft emissions modelling software, this paper details a global, transparent, and geographically allocated CO2 inventory for commercial aviation. Our estimates of total global carbon emissions, and the operations estimated in this study in terms of revenue passenger kilometers (RPKs) and freight tonne kilometers (FTKs), agree well with aggregate industry estimates. Strategic This working paper relates to Strategic Objective – Environmental Protection. Objectives: Financial Does not require additional funds implications: References: A40-WP/58, Consolidated Statement of Continuing ICAO Policies and Practices Related to Environmental Protection - Climate Change A40-WP/277, Setting a Long-Term Climate Change Goal for International Aviation 1. INTRODUCTION 1.1 Despite successive Assembly resolutions calling on the Council -
Evolutionary History of Floral Key Innovations in Angiosperms Elisabeth Reyes
Evolutionary history of floral key innovations in angiosperms Elisabeth Reyes To cite this version: Elisabeth Reyes. Evolutionary history of floral key innovations in angiosperms. Botanics. Université Paris Saclay (COmUE), 2016. English. NNT : 2016SACLS489. tel-01443353 HAL Id: tel-01443353 https://tel.archives-ouvertes.fr/tel-01443353 Submitted on 23 Jan 2017 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. NNT : 2016SACLS489 THESE DE DOCTORAT DE L’UNIVERSITE PARIS-SACLAY, préparée à l’Université Paris-Sud ÉCOLE DOCTORALE N° 567 Sciences du Végétal : du Gène à l’Ecosystème Spécialité de Doctorat : Biologie Par Mme Elisabeth Reyes Evolutionary history of floral key innovations in angiosperms Thèse présentée et soutenue à Orsay, le 13 décembre 2016 : Composition du Jury : M. Ronse de Craene, Louis Directeur de recherche aux Jardins Rapporteur Botaniques Royaux d’Édimbourg M. Forest, Félix Directeur de recherche aux Jardins Rapporteur Botaniques Royaux de Kew Mme. Damerval, Catherine Directrice de recherche au Moulon Président du jury M. Lowry, Porter Curateur en chef aux Jardins Examinateur Botaniques du Missouri M. Haevermans, Thomas Maître de conférences au MNHN Examinateur Mme. Nadot, Sophie Professeur à l’Université Paris-Sud Directeur de thèse M. -
GENOME EVOLUTION in MONOCOTS a Dissertation
GENOME EVOLUTION IN MONOCOTS A Dissertation Presented to The Faculty of the Graduate School At the University of Missouri In Partial Fulfillment Of the Requirements for the Degree Doctor of Philosophy By Kate L. Hertweck Dr. J. Chris Pires, Dissertation Advisor JULY 2011 The undersigned, appointed by the dean of the Graduate School, have examined the dissertation entitled GENOME EVOLUTION IN MONOCOTS Presented by Kate L. Hertweck A candidate for the degree of Doctor of Philosophy And hereby certify that, in their opinion, it is worthy of acceptance. Dr. J. Chris Pires Dr. Lori Eggert Dr. Candace Galen Dr. Rose‐Marie Muzika ACKNOWLEDGEMENTS I am indebted to many people for their assistance during the course of my graduate education. I would not have derived such a keen understanding of the learning process without the tutelage of Dr. Sandi Abell. Members of the Pires lab provided prolific support in improving lab techniques, computational analysis, greenhouse maintenance, and writing support. Team Monocot, including Dr. Mike Kinney, Dr. Roxi Steele, and Erica Wheeler were particularly helpful, but other lab members working on Brassicaceae (Dr. Zhiyong Xiong, Dr. Maqsood Rehman, Pat Edger, Tatiana Arias, Dustin Mayfield) all provided vital support as well. I am also grateful for the support of a high school student, Cady Anderson, and an undergraduate, Tori Docktor, for their assistance in laboratory procedures. Many people, scientist and otherwise, helped with field collections: Dr. Travis Columbus, Hester Bell, Doug and Judy McGoon, Julie Ketner, Katy Klymus, and William Alexander. Many thanks to Barb Sonderman for taking care of my greenhouse collection of many odd plants brought back from the field. -
Full of Beans: a Study on the Alignment of Two Flowering Plants Classification Systems
Full of beans: a study on the alignment of two flowering plants classification systems Yi-Yun Cheng and Bertram Ludäscher School of Information Sciences, University of Illinois at Urbana-Champaign, USA {yiyunyc2,ludaesch}@illinois.edu Abstract. Advancements in technologies such as DNA analysis have given rise to new ways in organizing organisms in biodiversity classification systems. In this paper, we examine the feasibility of aligning two classification systems for flowering plants using a logic-based, Region Connection Calculus (RCC-5) ap- proach. The older “Cronquist system” (1981) classifies plants using their mor- phological features, while the more recent Angiosperm Phylogeny Group IV (APG IV) (2016) system classifies based on many new methods including ge- nome-level analysis. In our approach, we align pairwise concepts X and Y from two taxonomies using five basic set relations: congruence (X=Y), inclusion (X>Y), inverse inclusion (X<Y), overlap (X><Y), and disjointness (X!Y). With some of the RCC-5 relationships among the Fabaceae family (beans family) and the Sapindaceae family (maple family) uncertain, we anticipate that the merging of the two classification systems will lead to numerous merged solutions, so- called possible worlds. Our research demonstrates how logic-based alignment with ambiguities can lead to multiple merged solutions, which would not have been feasible when aligning taxonomies, classifications, or other knowledge or- ganization systems (KOS) manually. We believe that this work can introduce a novel approach for aligning KOS, where merged possible worlds can serve as a minimum viable product for engaging domain experts in the loop. Keywords: taxonomy alignment, KOS alignment, interoperability 1 Introduction With the advent of large-scale technologies and datasets, it has become increasingly difficult to organize information using a stable unitary classification scheme over time. -
Advances in Alstroemeria Biotechnology
Title Advances in Alstroemeria Biotechnology Author(s) Hoshino, Yoichiro Floriculture, Ornamental and Plant Biotechnology : Advances and Topical Issues, Vol. 5. pp.540-547, Chapter 51. Citation ISBN: 978-4-903313-12-2 Issue Date 2008-05 Doc URL http://hdl.handle.net/2115/34118 Type bookchapter File Information FOPB5-51Hoshi08.pdf Instructions for use Hokkaido University Collection of Scholarly and Academic Papers : HUSCAP ® 51 Advances in Alstroemeria Biotechnology Yoichiro Hoshino1,2* 1 Field Science Center for Northern Biosphere, Hokkaido University, Kita 11, Nishi 10, Kita-Ku, Sapporo 060-0811, Japan 2 Division of Innovative Research, Creative Research Initiative ‘Sousei’ (CRIS), Hokkaido University, Kita 21, Nishi 10, Kita-Ku, Sapporo 001-0021, Japan Correspondence: * [email protected] Keywords: genetic transformation, interspecific hybridization, tissue culture ABSTRACT The genus Alstroemeria belongs to the family Alstroemeriaceae and comprises many ornamental species. This genus, including more than 60 species, is indigenous to South America. Thus far, numerous cultivars, which are used as cut flowers and potted plants worldwide, have been produced by interspecific hybridization and mutation breeding. Recently, biotechnological approaches are being applied in order to improve Alstroemeria strains. Interspecific hybrid plants have been produced by ovule cultures. By improving certain culture techniques, sexual incompatibility was overcome in some cross combinations using ovule cultures. Plant regeneration systems that involved the use of explants, immature ovules, leaves, etc., through callus cultures have been reported. Isolation of protoplasts and cultures resulting in plant regeneration were achieved by using the embryogenic callus. Particle bombardment and Agrobacterium-mediated procedures were applied for genetic transformation, and some transformed plants with marker genes were produced. -
Plant Genetics
RESEARCH HIGHLIGHTS Nature Reviews Genetics | AOP, published online 9 October 2014; doi:10.1038/nrg3843 PLANT GENETICS Notably, in accordance with the team’s earlier hypothesis on the specific stepwise progression of gene loss in Following the early root heterotrophic flowering plants (NAD(P)H genes followed by photosynthesis-related genes, of plastome degradation plastid-encoded RNA polymerase genes, ATP synthase genes and Parasitic organisms are often for high-throughput sequencing. housekeeping genes), coralroots genomically and morphologically De novo assembly was then used to are in the early stages of genome reduced. For example, some parasitic piece together the genomes and degradation. This study indicates that coralroots plants contain degraded plastid to define genes and pseudogenes. a specific path does seem to exist for are in the genomes owing to a reduced need In addition, chlorophyll content was plastid genome degradation (with to photosynthesize. A new study measured for several plants from some exceptions) and that coralroots initial steps now shows that coralroot orchids are each species. Some coralroot orchids are in the initial steps towards towards the in the early stages of the transition have green tissues, and it is thought the transition to a highly reduced transition to a to a parasitic lifestyle, and that this that these species are still able to chloroplast genome, which is typical condition has arisen independently at photosynthesize, whereas those of obligate parasites. “This condition highly reduced least twice in the genus. without any green tissues cannot. has arisen independently at least chloroplast Most coralroot orchids do not have The authors report a correlation twice in the genus, making coralroots genome leaves, produce little chlorophyll between the number of functional a powerful system in which to study and depend on fungi to obtain chloroplast genes and chlorophyll the transition to parasitism,” explains nutrients. -
The Alstroemeriaceae in Peru and Neighbouring Areas Alstroemeriaceae En Perú Y Áreas Vecinas Anton Hofreiter1 and Eric F
Rev. peru. biol. 13(1): 005 - 069 (octubre 2006) ALSTROEMERIACEAE IN PERU © Facultad de Ciencias Biológicas UNMSM Versión Online ISSN 1727-9933 ARTÍCULO DE REVISIÓN The Alstroemeriaceae in Peru and neighbouring areas Alstroemeriaceae en Perú y áreas vecinas Anton Hofreiter1 and Eric F. Rodríguez2 1 Ludwig-Maximilians- Abstract Universität, Department Biologie I, Bereich Biodi- The family Alstroemeriaceae with special emphasis in Peru is revised using versitätsforschung, morphological and distributional data. Species in this family were reinvestigated on Abteilung Systematische the basis of all types, material housed in several herbaria and five field trips, each of Botanik, Menzingerstraße which lasted several weeks, were undertaken to South America to study the plants in 67, D-80638 München, Germany. the field. The taxonomic and collection history of the genus is described and for each species the typical growth forms and their variability, habitat preferences and general Anton Hofreiter e-mail: [email protected] distribution are discussed. A key to determine the species of Peru in English and Spanish is provided. The study area comprise five geographic units recognised: 2 Herbarium Truxillense Amotape-Huancabamba-region (Ecuador, Peru), Cordillera Occidental (Peru), Cordi- (HUT), Universidad Nacio- nal de Trujillo, Jr. San Mar- llera Central (Peru), Cordillera Oriental (Bolivia, Peru) and the Altiplano (Bolivia, Peru). tín 392, Trujillo, Perú, The family as here circumscribed comprises two species of Alstroemeria and 68 Eric F. Rodríguez e-mail: species of Bomarea, of these 68 species 43 species are members of subgenus [email protected] Bomarea, 9 species of subgenus Sphaerine and 16 of the subgenus Wichuraea. The fourth and last subgenus into Bomarea genus denominated Baccata cannot be found in the area of this study.