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Development of a Real-Time Reverse Transcription
DEVELOPMENT AND EVALUATION OF A REAL-TIME POLYMERASE CHAIN REACTION ASSAY FOR EQUINE ENCEPHALOSIS VIRUS by Ntungufhadzeni Maclaughlin Rathogwa Submitted in partial fulfillment of the requirements for the degree Master of Veterinary Science (MSc) in the Department of Veterinary Tropical Diseases Faculty of Veterinary Science University of Pretoria South Africa Supervisor: Prof Moritz van Vuuren Co-supervisor: Dr Melvyn Quan November, 2011 © University of Pretoria TABLE OF CONTENTS DEDICATION .......................................................................................................................................... II DECLARATION ..................................................................................................................................... III ACKNOWLEDGEMENTS ...................................................................................................................... IV ABBREVIATIONS ................................................................................................................................... V LIST OF FIGURES ................................................................................................................................ VII LIST OF TABLES ................................................................................................................................ VIII ABSTRACT ............................................................................................................................................ IX 1. GENERAL INTRODUCTION ......................................................................................................... -
A New Orbivirus Isolated from Mosquitoes in North-Western Australia Shows Antigenic and Genetic Similarity to Corriparta Virus B
viruses Article A New Orbivirus Isolated from Mosquitoes in North-Western Australia Shows Antigenic and Genetic Similarity to Corriparta Virus but Does Not Replicate in Vertebrate Cells Jessica J. Harrison 1,†, David Warrilow 2,†, Breeanna J. McLean 1, Daniel Watterson 1, Caitlin A. O’Brien 1, Agathe M.G. Colmant 1, Cheryl A. Johansen 3, Ross T. Barnard 1, Sonja Hall-Mendelin 2, Steven S. Davis 4, Roy A. Hall 1 and Jody Hobson-Peters 1,* 1 Australian Infectious Diseases Research Centre, School of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia 4072, Australia; [email protected] (J.J.H.); [email protected] (B.J.M.); [email protected] (D.W.); [email protected] (C.A.O.B.); [email protected] (A.M.G.C.); [email protected] (R.T.B.); [email protected] (R.A.H.) 2 Public Health Virology Laboratory, Department of Health, Queensland Government, P.O. Box 594, Archerfield 4108, Australia; [email protected] (D.W.); [email protected] (S.H.-M.) 3 School of Pathology and Laboratory Medicine, The University of Western Australia, Nedlands 6009, Australia; [email protected] 4 Berrimah Veterinary Laboratory, Department of Primary Industries and Fisheries, Darwin 0828, Australia; [email protected] * Correspondence: [email protected]; Tel.: +61-7-3365-4648 † These authors contributed equally to the work. Academic Editor: Karyn Johnson Received: 19 February 2016; Accepted: 10 May 2016; Published: 20 May 2016 Abstract: The discovery and characterisation of new mosquito-borne viruses provides valuable information on the biodiversity of vector-borne viruses and important insights into their evolution. -
Clinically Important Vector-Borne Diseases of Europe
Natalie Cleton, DVM Erasmus MC, Rotterdam Department of Viroscience [email protected] No potential conflicts of interest to disclose © by author ESCMID Online Lecture Library Erasmus Medical Centre Department of Viroscience Laboratory Diagnosis of Arboviruses © by author Natalie Cleton ESCMID Online LectureMarion Library Koopmans Chantal Reusken [email protected] Distribution Arboviruses with public health impact have a global and ever changing distribution © by author ESCMID Online Lecture Library Notifications of vector-borne diseases in the last 6 months on Healthmap.org Syndromes of arboviral diseases 1) Febrile syndrome: – Fever & Malaise – Headache & retro-orbital pain – Myalgia 2) Neurological syndrome: – Meningitis, encephalitis & myelitis – Convulsions & coma – Paralysis 3) Hemorrhagic syndrome: – Low platelet count, liver enlargement – Petechiae © by author – Spontaneous or persistent bleeding – Shock 4) Arthralgia,ESCMID Arthritis and Online Rash: Lecture Library – Exanthema or maculopapular rash – Polyarthralgia & polyarthritis Human arboviruses: 4 main virus families Family Genus Species examples Flaviviridae flavivirus Dengue 1-5 (DENV) West Nile virus (WNV) Yellow fever virus (YFV) Zika virus (ZIKV) Tick-borne encephalitis virus (TBEV) Togaviridae alphavirus Chikungunya virus (CHIKV) O’Nyong Nyong virus (ONNV) Mayaro virus (MAYV) Sindbis virus (SINV) Ross River virus (RRV) Barmah forest virus (BFV) Bunyaviridae nairo-, phlebo-©, orthobunyavirus by authorCrimean -Congo heamoragic fever (CCHFV) Sandfly fever virus -
Mosquito-Borne Viruses, Insect-Specific
FULL PAPER Virology Mosquito-borne viruses, insect-specific flaviviruses (family Flaviviridae, genus Flavivirus), Banna virus (family Reoviridae, genus Seadornavirus), Bogor virus (unassigned member of family Permutotetraviridae), and alphamesoniviruses 2 and 3 (family Mesoniviridae, genus Alphamesonivirus) isolated from Indonesian mosquitoes SUPRIYONO1), Ryusei KUWATA1,2), Shun TORII1), Hiroshi SHIMODA1), Keita ISHIJIMA3), Kenzo YONEMITSU1), Shohei MINAMI1), Yudai KURODA3), Kango TATEMOTO3), Ngo Thuy Bao TRAN1), Ai TAKANO1), Tsutomu OMATSU4), Tetsuya MIZUTANI4), Kentaro ITOKAWA5), Haruhiko ISAWA6), Kyoko SAWABE6), Tomohiko TAKASAKI7), Dewi Maria YULIANI8), Dimas ABIYOGA9), Upik Kesumawati HADI10), Agus SETIYONO10), Eiichi HONDO11), Srihadi AGUNGPRIYONO10) and Ken MAEDA1,3)* 1)Laboratory of Veterinary Microbiology, Joint Faculty of Veterinary Medicine, Yamaguchi University, 1677-1 Yoshida, Yamaguchi 753-8515, Japan 2)Faculty of Veterinary Medicine, Okayama University of Science, 1-3 Ikoino-oka, Imabari, Ehime 794-8555, Japan 3)Department of Veterinary Science, National Institute of Infectious Diseases, 1-23-1 Toyama, Shinjuku-ku, Tokyo 162-8640, Japan 4)Research and Education Center for Prevention of Global Infectious Diseases of Animals, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu, Tokyo 183-8508, Japan 5)Pathogen Genomics Center, National Institute of Infectious Diseases, 1-23-1 Toyama, Shinjuku-ku, Tokyo 162-8640, Japan 6)Department of Medical Entomology, National Institute of Infectious Diseases, 1-23-1 -
Isolation of a Novel Fusogenic Orthoreovirus from Eucampsipoda Africana Bat Flies in South Africa
viruses Article Isolation of a Novel Fusogenic Orthoreovirus from Eucampsipoda africana Bat Flies in South Africa Petrus Jansen van Vuren 1,2, Michael Wiley 3, Gustavo Palacios 3, Nadia Storm 1,2, Stewart McCulloch 2, Wanda Markotter 2, Monica Birkhead 1, Alan Kemp 1 and Janusz T. Paweska 1,2,4,* 1 Centre for Emerging and Zoonotic Diseases, National Institute for Communicable Diseases, National Health Laboratory Service, Sandringham 2131, South Africa; [email protected] (P.J.v.V.); [email protected] (N.S.); [email protected] (M.B.); [email protected] (A.K.) 2 Department of Microbiology and Plant Pathology, Faculty of Natural and Agricultural Science, University of Pretoria, Pretoria 0028, South Africa; [email protected] (S.M.); [email protected] (W.K.) 3 Center for Genomic Science, United States Army Medical Research Institute of Infectious Diseases, Frederick, MD 21702, USA; [email protected] (M.W.); [email protected] (G.P.) 4 Faculty of Health Sciences, University of the Witwatersrand, Johannesburg 2193, South Africa * Correspondence: [email protected]; Tel.: +27-11-3866382 Academic Editor: Andrew Mehle Received: 27 November 2015; Accepted: 23 February 2016; Published: 29 February 2016 Abstract: We report on the isolation of a novel fusogenic orthoreovirus from bat flies (Eucampsipoda africana) associated with Egyptian fruit bats (Rousettus aegyptiacus) collected in South Africa. Complete sequences of the ten dsRNA genome segments of the virus, tentatively named Mahlapitsi virus (MAHLV), were determined. Phylogenetic analysis places this virus into a distinct clade with Baboon orthoreovirus, Bush viper reovirus and the bat-associated Broome virus. -
Commission Directive (Eu)
L 279/54 EN Offi cial Jour nal of the European Union 31.10.2019 COMMISSION DIRECTIVE (EU) 2019/1833 of 24 October 2019 amending Annexes I, III, V and VI to Directive 2000/54/EC of the European Parliament and of the Council as regards purely technical adjustments THE EUROPEAN COMMISSION, Having regard to the Treaty on the Functioning of the European Union, Having regard to Directive 2000/54/EC of the European Parliament and of the Council of 18 September 2000 on the protection of workers from risks related to exposure to biological agents at work (1), and in particular Article 19 thereof, Whereas: (1) Principle 10 of the European Pillar of Social Rights (2), proclaimed at Gothenburg on 17 November 2017, provides that every worker has the right to a healthy, safe and well-adapted working environment. The workers’ right to a high level of protection of their health and safety at work and to a working environment that is adapted to their professional needs and that enables them to prolong their participation in the labour market includes protection from exposure to biological agents at work. (2) The implementation of the directives related to the health and safety of workers at work, including Directive 2000/54/EC, was the subject of an ex-post evaluation, referred to as a REFIT evaluation. The evaluation looked at the directives’ relevance, at research and at new scientific knowledge in the various fields concerned. The REFIT evaluation, referred to in the Commission Staff Working Document (3), concludes, among other things, that the classified list of biological agents in Annex III to Directive 2000/54/EC needs to be amended in light of scientific and technical progress and that consistency with other relevant directives should be enhanced. -
(Smrev) Genome Encoding a FAST Protein with a Non-AUG Start Site Fei Ke, Li-Bo He, Chao Pei and Qi-Ya Zhang*
Ke et al. BMC Genomics 2011, 12:323 http://www.biomedcentral.com/1471-2164/12/323 RESEARCH ARTICLE Open Access Turbot reovirus (SMReV) genome encoding a FAST protein with a non-AUG start site Fei Ke, Li-Bo He, Chao Pei and Qi-Ya Zhang* Abstract Background: A virus was isolated from diseased turbot Scophthalmus maximus in China. Biophysical and biochemical assays, electron microscopy, and genome electrophoresis revealed that the virus belonged to the genus Aquareovirus, and was named Scophthalmus maximus reovirus (SMReV). To the best of our knowledge, no complete sequence of an aquareovirus from marine fish has been determined. Therefore, the complete characterization and analysis of the genome of this novel aquareovirus will facilitate further understanding of the taxonomic distribution of aquareovirus species and the molecular mechanism of its pathogenesis. Results: The full-length genome sequences of SMReV were determined. It comprises eleven dsRNA segments covering 24,042 base pairs and has the largest S4 genome segment in the sequenced aquareoviruses. Sequence analysis showed that all of the segments contained six conserved nucleotides at the 5’ end and five conserved nucleotides at the 3’ end (5’-GUUUUA —— UCAUC-3’). The encoded amino acid sequences share the highest sequence identities with the respective proteins of aquareoviruses in species group Aquareovirus A. Phylogenetic analysis based on the major outer capsid protein VP7 and RNA-dependent RNA polymerase were performed. Members in Aquareovirus were clustered in two groups, one from fresh water fish and the other from marine fish. Furthermore, a fusion associated small transmembrane (FAST) protein NS22, which is translated from a non-AUG start site, was identified in the S7 segment. -
Evaluation of Diagnostic Methods for Vector-Borne Viral Infections and Development of Tools for the Study of Yellow Fever Infections
Evaluation of diagnostic methods for vector-borne viral infections and development of tools for the study of yellow fever infections Inaugural-Dissertation to obtain the academic degree Doctor rerum naturalium (Dr. rer. Nat.) submitted to the Department of Biology, Chemistry and Pharmacy of the Freie Universität of Berlin by Camille Escadafal from Châtenay-Malabry (France) 2014 The presented Ph.D. thesis was conducted from September 2011 to May 2014 at Robert Koch Institute, Berlin, Germany under the supervision of Prof. Dr. Matthias Niedrig. 1st reviewer: Prof. Dr. Matthias Niedrig Robert Koch Institute, Berlin 2nd reviewer: Prof. Dr. Rupert Mutzel Freie Universität Berlin Date of defense: 18th July 2014 DECLARATION OF AUTHORSHIP I certify that the work presented here is, to the best of my knowledge and belief, original and the result of my own investigations, except as acknowledged. The present work has not been submitted, either in part or completely, for a degree at this or any other University. Date : ______________ Signature: _______________ I II ACKNOWLEDGEMENTS It is a pleasure for me to thank the persons who have supported me during the achievement of this PhD thesis: My supervisor at the Robert Koch Institute, Professor Matthias Niedrig, for offering me such a great working experience and learning opportunity. At his side, I have learned a lot in the field of virology but also about human relationships. I also thank him for his kindness, support and liberty of initiative he gave me throughout all this work. My supervisor at the Freie Universität, Professor Rupert Mützel, for listening and advising me and facilitating every stage of the process. -
Characterization of Molecular Targets for Differential Regulation of the Type I and III Interferon Induction and Signalling Pathways by Rotavirus NSP1
Characterization of molecular targets for differential regulation of the type I and III interferon induction and signalling pathways by rotavirus NSP1 Thesis submitted in accordance with the requirements of the University of Liverpool for the degree of Doctor in Philosophy by Gennaro Iaconis September 2018 Table of contents TABLE OF CONTENTS ............................................................................................................................... 1 LIST OF FIGURES ...................................................................................................................................... 6 LIST OF TABLES ........................................................................................................................................ 8 DECLARATION ....................................................................................................................................... 10 ABSTRACT ............................................................................................................................................. 11 1 INTRODUCTION ........................................................................................................................... 12 1.1 Rotavirus ................................................................................................................. 12 1.1.1 Historical Background ......................................................................................... 12 1.1.2 Classification ...................................................................................................... -
Trans-Acting RNA–RNA Interactions in Segmented RNA Viruses
viruses Review Trans-Acting RNA–RNA Interactions in Segmented RNA Viruses Laura R. Newburn and K. Andrew White * Department of Biology, York University, Toronto, ON M3J 1P3, Canada * Correspondence: [email protected] Received: 18 July 2019; Accepted: 11 August 2019; Published: 14 August 2019 Abstract: RNA viruses represent a large and important group of pathogens that infect a broad range of hosts. Segmented RNA viruses are a subclass of this group that encode their genomes in two or more molecules and package all of their RNA segments in a single virus particle. These divided genomes come in different forms, including double-stranded RNA, coding-sense single-stranded RNA, and noncoding single-stranded RNA. Genera that possess these genome types include, respectively, Orbivirus (e.g., Bluetongue virus), Dianthovirus (e.g., Red clover necrotic mosaic virus) and Alphainfluenzavirus (e.g., Influenza A virus). Despite their distinct genomic features and diverse host ranges (i.e., animals, plants, and humans, respectively) each of these viruses uses trans-acting RNA–RNA interactions (tRRIs) to facilitate co-packaging of their segmented genome. The tRRIs occur between different viral genome segments and direct the selective packaging of a complete genome complement. Here we explore the current state of understanding of tRRI-mediated co-packaging in the abovementioned viruses and examine other known and potential functions for this class of RNA–RNA interaction. Keywords: RNA structure; RNA–RNA interactions; RNA virus; RNA packaging; segmented virus; influenza virus; bluetongue virus; reovirus; red clover necrotic mosaic virus 1. Introduction RNA viruses are important pathogens that infect a wide variety of hosts. -
A Novel Rubi-Like Virus in the Pacific Electric
viruses Article A Novel Rubi-Like Virus in the Pacific Electric Ray (Tetronarce californica) Reveals the Complex Evolutionary History of the Matonaviridae Rebecca M. Grimwood 1 , Edward C. Holmes 2 and Jemma L. Geoghegan 1,3,* 1 Department of Microbiology and Immunology, University of Otago, Dunedin 9016, New Zealand; [email protected] 2 Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences and School of Medical Sciences, University of Sydney, Sydney, NSW 2006, Australia; [email protected] 3 Institute of Environmental Science and Research, Wellington 5018, New Zealand * Correspondence: [email protected] Abstract: Rubella virus (RuV) is the causative agent of rubella (“German measles”) and remains a global health concern. Until recently, RuV was the only known member of the genus Rubivirus and the only virus species classified within the Matonaviridae family of positive-sense RNA viruses. Recently, two new rubella-like matonaviruses, Rustrela virus and Ruhugu virus, have been identified in several mammalian species, along with more divergent viruses in fish and reptiles. To screen for the presence of additional novel rubella-like viruses, we mined published transcriptome data using genome sequences from Rubella, Rustrela, and Ruhugu viruses as baits. From this, we identified a novel rubella-like virus in a transcriptome of Tetronarce californica—order Torpediniformes (Pacific electric ray)—that is more closely related to mammalian Rustrela virus than to the divergent fish Citation: Grimwood, R.M.; Holmes, matonavirus and indicative of a complex pattern of cross-species virus transmission. Analysis of E.C.; Geoghegan, J.L. -
2021 Organismenliste
ORGANISMENLISTEN A: Bakterien Bakterien und ähnliche Organismen Risikogruppe Hinweis Actinomadura madurae 2 Actinomadura pelletieri 2 Actinomyces gerencseriae 2 Actinomyces israelii 2 Actinomyces spp. 2 Aggregatibacter actinomycetemcomitans 2 (Actinobacillus actinomycetemcomitans) Anaplasma spp. 2 Arcanobacterium haemolyticum (Corynebacterium haemolyticum) 2 Arcobacter butzleri 2 Bacillus anthracis 3 T Bacteroides fragilis 2 Bacteroides spp. 2 Bartonella bacilliformis 2 Bartonella quintana (Rochalimaea quintana) 2 Bartonella (Rochalimea) spp. 2 Bordetella bronchiseptica 2 Bordetella parapertussis 2 Bordetella pertussis 2 T, V Bordetella spp. 2 Borrelia burgdorferi 2 Borrelia duttonii 2 Borrelia recurrentis 2 Borrelia spp. 2 Brachyspira spp. 2 Brucella abortus 3 Brucella canis 3 Brucella inopinata 3 Brucella melitensis 3 Brucella suis 3 Burkholderia cepacia 2 Burkholderia mallei (Pseudomonas mallei) 3 Burkholderia pseudomallei (Pseudomonas pseudomallei) 3 Campylobacter fetus subsp. fetus 2 Campylobacter fetus subsp. venerealis 2 Campylobacter jejuni subsp. doylei 2 Campylobacter jejuni subsp. jejuni 2 Campylobacter spp. 2 Cardiobacterium hominis 2 Cardiobacterium valvarum 2 Chlamydia abortus (Chlamydophila abortus) 2 Chlamydia caviae (Chlamydophila caviae) 2 Chlamydia felis (Chlamydophila felis) 2 Chlamydia pneumoniae (Chlamydophila pneumoniae) 2 Chlamydia psittaci (Chlamydophila psittaci) (aviäre Stämme) 3 Chlamydia psittaci (Chlamydophila psittaci) (sonstige Stämme) 2 Chlamydia trachomatis (Chlamydophila trachomatis) 2 Clostridium botulinum