Symmetromphalus Hageni Sp. N., a New Neomphalid Gastropod
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Genomic, Transcriptomic, and Proteomic Insights Into Intracellular
Zhou et al. Microbiome (2021) 9:182 https://doi.org/10.1186/s40168-021-01099-6 RESEARCH Open Access Arms race in a cell: genomic, transcriptomic, and proteomic insights into intracellular phage–bacteria interplay in deep-sea snail holobionts Kun Zhou1,2, Ying Xu 2,3*, Rui Zhang4,5* and Pei-Yuan Qian1* Abstract Background: Deep-sea animals in hydrothermal vents often form endosymbioses with chemosynthetic bacteria. Endosymbionts serve essential biochemical and ecological functions, but the prokaryotic viruses (phages) that determine their fate are unknown. Results: We conducted metagenomic analysis of a deep-sea vent snail. We assembled four genome bins for Caudovirales phages that had developed dual endosymbiosis with sulphur-oxidising bacteria (SOB) and methane- oxidising bacteria (MOB). Clustered regularly interspaced short palindromic repeat (CRISPR) spacer mapping, genome comparison, and transcriptomic profiling revealed that phages Bin1, Bin2, and Bin4 infected SOB and MOB. The observation of prophages in the snail endosymbionts and expression of the phage integrase gene suggested the presence of lysogenic infection, and the expression of phage structural protein and lysozyme genes indicated active lytic infection. Furthermore, SOB and MOB appear to employ adaptive CRISPR–Cas systems to target phage DNA. Additional expressed defence systems, such as innate restriction–modification systems and dormancy- inducing toxin–antitoxin systems, may co-function and form multiple lines for anti-viral defence. To counter host defence, phages Bin1, Bin2, and Bin3 appear to have evolved anti-restriction mechanisms and expressed methyltransferase genes that potentially counterbalance host restriction activity. In addition, the high-level expression of the auxiliary metabolic genes narGH, which encode nitrate reductase subunits, may promote ATP production, thereby benefiting phage DNA packaging for replication. -
Vertical, Lateral and Temporal Structure in Larval Distributions at Hydrothermal Vents
MARINE ECOLOGY PROGRESS SERIES Vol. 293: 1–16, 2005 Published June 2 Mar Ecol Prog Ser Vertical, lateral and temporal structure in larval distributions at hydrothermal vents L. S. Mullineaux1,*, S. W. Mills1, A. K. Sweetman2, A. H. Beaudreau3, 4 5 A. Metaxas , H. L. Hunt 1Woods Hole Oceanographic Institution, MS 34, Woods Hole, Massachusetts 02543, USA 2Max-Planck-Institut für marine Mikrobiologie, Celsiusstraße 1, 28359 Bremen, Germany 3University of Washington, Box 355020, Seattle, Washington 98195, USA 4Dalhousie University, Halifax, Nova Scotia B3H 4J1, Canada 5University of New Brunswick, PO Box 5050, Saint John, New Brunswick E2L 4L5, Canada ABSTRACT: We examined larval abundance patterns near deep-sea hydrothermal vents along the East Pacific Rise to investigate how physical transport processes and larval behavior may interact to influence larval dispersal from, and supply to, vent populations. We characterized vertical and lateral distributions and temporal variation of larvae of vent species using high-volume pumps that recov- ered larvae in good condition (some still alive) and in high numbers (up to 450 individuals sample–1). Moorings supported pumps at heights of 1, 20, and 175 m above the seafloor, and were positioned directly above and at 10s to 100s of meters away from vent communities. Sampling was conducted on 4 cruises between November 1998 and May 2000. Larvae of 22 benthic species, including gastropods, a bivalve, polychaetes, and a crab, were identified unequivocally as vent species, and 15 additional species, or species-groups, comprised larvae of probable vent origin. For most taxa, abundances decreased significantly with increasing height above bottom. When vent sites within the confines of the axial valley were considered, larval abundances were significantly higher on-vent than off, sug- gesting that larvae may be retained within the valley. -
Reproduction of Gastropods from Vents on the East Pacific Rise and the Mid-Atlantic Ridge
JOBNAME: jsr 27#1 2008 PAGE: 1 OUTPUT: Friday March 14 03:55:15 2008 tsp/jsr/159953/27-1-19 View metadata, citation and similar papers at core.ac.uk brought to you by CORE Journal of Shellfish Research, Vol. 27, No. 1, 107–118, 2008. provided by Woods Hole Open Access Server REPRODUCTION OF GASTROPODS FROM VENTS ON THE EAST PACIFIC RISE AND THE MID-ATLANTIC RIDGE PAUL A. TYLER,1* SOPHIE PENDLEBURY,1 SUSAN W. MILLS,2 LAUREN MULLINEAUX,2 KEVIN J. ECKELBARGER,3 MARIA BAKER1 AND CRAIG M. YOUNG4 1National Oceanography Centre, Southampton, University of Southampton, Southampton SO14 3ZH, United Kingdom; 2Biology Department Woods Hole Oceanographic Institution, Woods Hole Massachusetts 02543; 3Darling Marine Center, University of Maine, 193 Clark’s Cove Road. Walpole, Maine 04573; 4Oregon Institute of Marine Biology, University of Oregon, Charleston, Oregon 97420 ABSTRACT The gametogenic biology is described for seven species of gastropod from hydrothermal vents in the East Pacific and from the Mid-Atlantic Ridge. Species of the limpet genus Lepetodrilus (Family Lepetodrilidae) had a maximum unfertilized oocyte size of <90 mm and there was no evidence of reproductive periodicity or spatial variation in reproductive pattern. Individuals showed early maturity with females undergoing gametogenesis at less than one third maximum body size. There was a power relationship between shell length and fecundity, with a maximum of ;1,800 oocytes being found in one individual, although individual fecundity was usually <1,000. Such an egg size might be indicative of planktotrophic larval development, but there was never any indication of shell growth in larvae from species in this genus. -
New Archaeogastropod Limpets from Hydrothermal Vents New Family Peltospiridae, New Superfamily Peltospiracea
Zoologica Scripta, Vol. 18, No. 1, pp. 49-66,1989 0300-3256/89 $3.00 +.00 Printed in Great Britain Pergamon Press pic 1989 The Norwegian Academy of Science and Letters New archaeogastropod limpets from hydrothermal vents new family Peltospiridae, new superfamily Peltospiracea JAMES H. MCLEAN Accepted 25 February 1988 McLean, J. H. 1989. New archaeogastropod limpets from hydrothermal vents: new family Peltospiridae, new superfamily Peltospiracea.—Zool. Scr. 18:49-66. Seven new species of limpets from hydrothermal vents are described in five new genera in the new family Peltospiridae (new superfamily Peltospiracea). Limpets in this family are known only from the hydrothermal vent community at two sites, near 21°N and 13°N, on the East Pacific Rise. New genera and species are: Peltospira, type species P. operculata from both sites, and P. delicata from 13°N; Nodopelta, type species N. heminoda from both sites, and N. subnoda from 13°N; Rhynchopelta, type species R. concentrica from both sites; Echinopelta, type species E. fistulosa from 21°N; Hirtopelta, type species H. hirta from 13°N. These limpets are associated with the Pompei worm Alvinella, except for Rhynchopelta, which is associated with the vestimentiferan worm Riftia. James H. McLean, Los Angeles County Museum of Natural History, 900 Exposition Blvd, Los Angeles, CA 90007, U.S.A. Introduction and coiled gastropods were illustrated by Turner & Lutz (1984), Turner et al. (1985) and Lutz et al. (1986), who The hydrothermal vent community of the East Pacific has also discussd the potential for larval dispersal in hydro- now been known for a decade, following the first dis thermal vent mollusks. -
The Heart of a Dragon: 3D Anatomical Reconstruction of the 'Scaly-Foot Gastropod'
The heart of a dragon: 3D anatomical reconstruction of the 'scaly-foot gastropod' (Mollusca: Gastropoda: Neomphalina) reveals its extraordinary circulatory system Chen, C., Copley, J. T., Linse, K., Rogers, A. D., & Sigwart, J. D. (2015). The heart of a dragon: 3D anatomical reconstruction of the 'scaly-foot gastropod' (Mollusca: Gastropoda: Neomphalina) reveals its extraordinary circulatory system. Frontiers in zoology, 12(13), [13]. https://doi.org/10.1186/s12983-015-0105-1 Published in: Frontiers in zoology Document Version: Publisher's PDF, also known as Version of record Queen's University Belfast - Research Portal: Link to publication record in Queen's University Belfast Research Portal Publisher rights © 2015 Chen et al. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. General rights Copyright for the publications made accessible via the Queen's University Belfast Research Portal is retained by the author(s) and / or other copyright owners and it is a condition of accessing these publications that users recognise and abide by the legal requirements associated with these rights. Take down policy The Research Portal is Queen's institutional repository that provides access to Queen's research output. Every effort has been made to ensure that content in the Research Portal does not infringe any person's rights, or applicable UK laws. -
The Limpet Form in Gastropods: Evolution, Distribution, and Implications for the Comparative Study of History
UC Davis UC Davis Previously Published Works Title The limpet form in gastropods: Evolution, distribution, and implications for the comparative study of history Permalink https://escholarship.org/uc/item/8p93f8z8 Journal Biological Journal of the Linnean Society, 120(1) ISSN 0024-4066 Author Vermeij, GJ Publication Date 2017 DOI 10.1111/bij.12883 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Biological Journal of the Linnean Society, 2016, , – . With 1 figure. Biological Journal of the Linnean Society, 2017, 120 , 22–37. With 1 figures 2 G. J. VERMEIJ A B The limpet form in gastropods: evolution, distribution, and implications for the comparative study of history GEERAT J. VERMEIJ* Department of Earth and Planetary Science, University of California, Davis, Davis, CA,USA C D Received 19 April 2015; revised 30 June 2016; accepted for publication 30 June 2016 The limpet form – a cap-shaped or slipper-shaped univalved shell – convergently evolved in many gastropod lineages, but questions remain about when, how often, and under which circumstances it originated. Except for some predation-resistant limpets in shallow-water marine environments, limpets are not well adapted to intense competition and predation, leading to the prediction that they originated in refugial habitats where exposure to predators and competitors is low. A survey of fossil and living limpets indicates that the limpet form evolved independently in at least 54 lineages, with particularly frequent origins in early-diverging gastropod clades, as well as in Neritimorpha and Heterobranchia. There are at least 14 origins in freshwater and 10 in the deep sea, E F with known times ranging from the Cambrian to the Neogene. -
University of Southampton Research Repository Eprints Soton
University of Southampton Research Repository ePrints Soton Copyright © and Moral Rights for this thesis are retained by the author and/or other copyright owners. A copy can be downloaded for personal non-commercial research or study, without prior permission or charge. This thesis cannot be reproduced or quoted extensively from without first obtaining permission in writing from the copyright holder/s. The content must not be changed in any way or sold commercially in any format or medium without the formal permission of the copyright holders. When referring to this work, full bibliographic details including the author, title, awarding institution and date of the thesis must be given e.g. AUTHOR (year of submission) "Full thesis title", University of Southampton, name of the University School or Department, PhD Thesis, pagination http://eprints.soton.ac.uk UNIVERSITY OF SOUTHAMPTON FACULTY OF NATURAL AND ENVIRONMENTAL SCIENCES Ocean and Earth Science Volume 1 of 1 Life-history biology and biogeography of invertebrates in deep-sea chemosynthetic environments by Verity Nye Thesis for the degree of Doctor of Philosophy December 2013 UNIVERSITY OF SOUTHAMPTON ABSTRACT FACULTY OF NATURAL AND ENVIRONMENTAL SCIENCES Ocean and Earth Science Thesis for the degree of Doctor of Philosophy LIFE-HISTORY BIOLOGY AND BIOGEOGRAPHY OF INVERTEBRATES IN DEEP-SEA CHEMOSYNTHETIC ENVIRONMENTS Verity Nye Globally-distributed, insular and ephemeral deep-sea hydrothermal vents with their endemic faunas provide ‘natural laboratories’ for studying the processes that shape global patterns of marine life. The continuing discovery of hydrothermal vents and their faunal assemblages has yielded hundreds of new species and revealed several biogeographic provinces, distinguished by differences in the taxonomic composition of their assemblages. -
Research Article the Continuing Debate on Deep Molluscan Phylogeny: Evidence for Serialia (Mollusca, Monoplacophora + Polyplacophora)
Hindawi Publishing Corporation BioMed Research International Volume 2013, Article ID 407072, 18 pages http://dx.doi.org/10.1155/2013/407072 Research Article The Continuing Debate on Deep Molluscan Phylogeny: Evidence for Serialia (Mollusca, Monoplacophora + Polyplacophora) I. Stöger,1,2 J. D. Sigwart,3 Y. Kano,4 T. Knebelsberger,5 B. A. Marshall,6 E. Schwabe,1,2 and M. Schrödl1,2 1 SNSB-Bavarian State Collection of Zoology, Munchhausenstraße¨ 21, 81247 Munich, Germany 2 Faculty of Biology, Department II, Ludwig-Maximilians-Universitat¨ Munchen,¨ Großhaderner Straße 2-4, 82152 Planegg-Martinsried, Germany 3 Queen’s University Belfast, School of Biological Sciences, Marine Laboratory, 12-13 The Strand, Portaferry BT22 1PF, UK 4 Department of Marine Ecosystems Dynamics, Atmosphere and Ocean Research Institute, University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8564, Japan 5 Senckenberg Research Institute, German Centre for Marine Biodiversity Research (DZMB), Sudstrand¨ 44, 26382 Wilhelmshaven, Germany 6 Museum of New Zealand Te Papa Tongarewa, P.O. Box 467, Wellington, New Zealand Correspondence should be addressed to M. Schrodl;¨ [email protected] Received 1 March 2013; Revised 8 August 2013; Accepted 23 August 2013 Academic Editor: Dietmar Quandt Copyright © 2013 I. Stoger¨ et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Molluscs are a diverse animal phylum with a formidable fossil record. Although there is little doubt about the monophyly of the eight extant classes, relationships between these groups are controversial. We analysed a comprehensive multilocus molecular data set for molluscs, the first to include multiple species from all classes, including five monoplacophorans in both extant families. -
Minireview Indigenous Ectosymbiotic Bacteria Associated with Diverse
Environmental Microbiology Reports (2010) doi:10.1111/j.1758-2229.2010.00136.x Minireview Indigenous ectosymbiotic bacteria associated with diverse hydrothermal vent invertebratesemi4_136 1..10 Shana K. Goffredi* Historical documentation suggests that the prevalence Biology Department, Occidental College, 1600 Campus and possible importance of these associations, whether Rd, Los Angeles, CA 90041, USA. beneficial or detrimental, was realized long ago (Ander- son and Stephens, 1969; Johnson et al., 1971; Sochard et al., 1979). Today, there are many well-known ectosym- Summary bioses involving hosts within at least three subgroups of Symbioses involving bacteria and invertebrates con- the Ciliophora, one Euglenozoan,twoNematoda subfami- tribute to the biological diversity and high productiv- lies, three Mollusca families, two classes of Annelida, and ity of both aquatic and terrestrial environments. many Crustacea, including both decapods and cirripeds Well-known examples from chemosynthetic deep-sea (Buck et al., 2000; Polz et al., 2000; Dubilier et al., 2008). hydrothermal vent environments involve ectosymbi- The vent shrimp Rimicaris exoculata, for example, pos- otic microbes associated with the external surfaces of sesses dense bacteria on its carapace and mouthparts marine invertebrates. Some of these ectosymbioses (Van Dover et al., 1988). Once thought to be a monocul- confer protection or defence from predators or the ture of a single, pleomorphic epsilonproteobacterium, it is environment itself, some are nutritional in nature, and now known that the bacterial community includes two many still are of unknown function. Several recently dominant bacterial types, whatever the prevailing chemi- discovered hydrothermal vent invertebrates, includ- cal conditions surrounding the animal (Gebruk et al., ing two populations of yeti crab (Kiwa spp.), a limpet 1993; Polz and Cavanaugh, 1995; Struck et al., 2008). -
From Lower Cretaceous Hydrocarbon-Seep Carbonates of Northern California
J. Paleont.. 82(1). 2008. pp. 140-153 Copyright © 2008. The PaJeontoiogical Society 0022-3360/08/0082- I40S03.00 lACMTp-pus 1T> Z58f TWO NEW SPECIES OF RETISKENEA1 (GASTROPODA: NEOMPHALIDAE) FROM LOWER CRETACEOUS HYDROCARBON-SEEP CARBONATES OF NORTHERN CALIFORNIA KATHLEEN A. CAMPBELL,12 DAWN E. PETERSON,23 AND ANDREA C. ALFARO4 'School of Geography. Geology and Environmental Science, University of Auckland, Private Bag 90219. Auckland 1142, New Zealand, <[email protected]>: department of Invertebrate Zoology & Geology. California Academy of Sciences, Golden Gate Park, San Francisco 94118 USA; 3Museum of Paleontology. Valley Life Science Building, University of California. Berkeley 94720 USA; and 4School of Applied Sciences, Faculty of Health and Environmental Sciences, Auckland University of Technology. Private Bag 92006, Auckland 1142. New Zealand ABSTRACT—Two new Mesozoic gastropod species, provisionally attributed to the minute (height < 5 mm) coiled neomphalid genus Retiskenea!, are described from three geographically isolated, Early Cretaceous, hydrocarbon seep-carbonate sites at Wilbur Springs, Rice Valley, and Cold Fork of Cottonwood Creek, northern California (USA). A fourth paleo-seep locality at Paskenta, of probable Upper Jurassic age, also yielded a single specimen of a morphologically similar microgastropod that may be a neomphalid with affinities to the Lower Cretaceous specimens described herein. The limestone lenses are —2-260 m in length, —1-5 m in diameter, and surrounded by forearc siliciclastics of bathyal turbidites or sedimentary serpentinites in the Upper Jurassic to Lower Cretaceous (Tithonian-Albian) Great Valley Group and its equivalents. The Lower Cretaceous microgastropods are tentatively placed in Retiskenea? based on similar shell characters: size, globose shape, inflated reticulate protoconch, number and distinct inflation of the body whorls, and fine, prosocline sculpture of the final body whorl. -
Molecular Phylogeny of Basal Gastropods (Vetigastropoda) Shows Stochastic Colonization of Chemosynthetic Habitats at Least from the Mid Triassic
Cah. Biol. Mar. (2006) 47 : 343-346 Molecular phylogeny of basal gastropods (Vetigastropoda) shows stochastic colonization of chemosynthetic habitats at least from the mid Triassic Daniel L. GEIGER1 and Christine E. THACKER2 (1) Santa Barbara Museum of Natural History, Invertebrate Zoology, 2559 Puesta del Sol Road, Santa Barbara, CA 93105, USA. phone: (805) 683 4711 x152, fax: (805) 563 0574. E-mail: [email protected] (2) Natural History Museum of Los Angeles County, Ichthyology Section, 900 Exposition Blvd., Los Angeles, CA 90007, USA. E-mail: [email protected] Abstract: A molecular phylogeny of 40 basal gastropod species representing 14 families (including eight species in four families from chemosynthetic habitats) was constructed, based on 3038 characters (Histone 3, COI, 18S). Unambiguous fossils indicated minimum ages of four major lineages. It suggests that chemosynthetic habitats were colonized several times independently and date back to at least the mid Triassic. Keywords: Gastropods l Hydrothermal vent l Molecular phylogeny l Colonization l Triassic Introduction thetic lineages. We can analyze their relationships despite the fact that the membership of Vetigastropoda is not yet Determining the age of taxa living at chemosynthetic fully agreed upon. There is a broad consensus that habitats (hydrothermal vents, cold seeps, whale and wood Haliotidae (abalone), Scissurellidae (little slit shells), falls) is an interesting question. Several groups of Fissurellidae (key hole limpets), Pleurotomariidae (slit organisms are found in more than one chemosynthetic shells) and Trochoidea (top snails, turban snails) belong in habitat type, but are not know from either shallow water or Vetigastropoda. Some of the chemosynthetic groups the general deep sea. -
Data Sources the Next 64 Pages Comprise a Reference List
SUPPORTING INFORMATION APPENDIX 1: Data Sources The next 64 pages comprise a reference list for all literary sources given as references for trait scores and/or comments in the sFDvent raw (marked with an asterisk (*) if not then included in recommended) and/or recommended datasets (Tables S4.3 and S4.2, respectively). These references are not in alphabetical order, as the database is a ‘living’ record, so new references will be added and a new number assigned. In the recommended dataset (Table S4.2), the references are recorded according to the numbers listed below (and in Table S1.1), to ensure that citations are relatively easy for users to carry through when conducting analyses using subsets of the data, for example. If a score in the recommended dataset is supported by more than one reference, multiple reference identifiers are provided and separated by a semi-colon (;). The references are not provided as numbers / identifiers in the other versions of the dataset, as information is lost during this processing step (e.g., ‘expert opinion’, or 66, replaces comments made by experts in each reference column regarding additional observations, rationale for certainty scores, etc.), which may prove useful for some users. Other versions of the dataset thus maintain raw reference entries for transparency and as potentially useful metadata. We provide a copy of the recommended dataset without the references as numbers (Table S4.2A), in case it is easier for users to cross-reference between the two sheets to seek additional comments for a given data subset of interest. 1. Aguado, M.